[BEGIN]

REFERENCE HAIRPIN
************************************************************************************************************
ID                 : mmu-mir-107
DESCRIPTION        : mmu-mir-107 MI0000684 Mus musculus miR-107 stem-loop
CHROMOSOME         : 19
SPAN               : 34895177 - 34895263
LENGTH             : 87
SEQUENCE           : TTCTCTGTGCTTTCAGCTTCTTTACAGTGTTGCCTTGTGGCATGGAGTTCAAGCAGCATTGTACAGGGCTATCAAAGCACAGAGAGC
OVERHANG THRESHOLD : 40%
************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-107
ACCID      : MI0000684
PARENT     : mmu-mir-107
CHROMOSOME : 19
START      : 34895177
STOP       : 34895263
OFFSET     : 52..74
SEQUENCE   : AGCAGCATTGTACAGGGCTATCA
STRAND     : -
******************************



*** MATURE ***
_______________________________________________________________________________________
TTCTCTGTGCTTTCAGCTTCTTTACAGTGTTGCCTTGTGGCATGGAGTTCAAGCAGCATTGTACAGGGCTATCAAAGCACAGAGAGC REF                  19                   34895177 - 34895263  
                                                   AGCAGCATTGTACAGGGCTATCA              MATURE               19                   34895229 - 34895337  mmu-miR-107          -                    
_______________________________________________________________________________________

                                                                                   -SEQ-                -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...................................................AGCAGCATTGTACAGGGCTATCA..............   30292_10_0_0_0_0_43       MATURE           53        12.33           10         6.62           43        15.41                        23   
...................................................AGCAGCATTGTACAGGGCTATCt..............   42094_16_0_0_0_0_15       MATURE           31         7.21           16        10.60           15         5.38                        22   
...................................................AGCAGCATTGTACAGaGCTAT................   35641_16_0_0_0_0_11       MATURE           27         6.28           16        10.60           11         3.94                      15A5   
...................................................AGCAGCATTGTACAGGaCTAT................   42897_11_0_0_0_0_14       MATURE           25         5.81           11         7.28           14         5.02                      16A4   
...................................................AGCAGCATTGTACAGGGCTATCAt.............    29747_4_0_0_0_0_18       MATURE           22         5.12            4         2.65           18         6.45                        23   
...............................................TTCgAGCAGCATTGTACAGGGCTAT................     6622_16_0_0_0_0_2       MATURE           18         4.19           16        10.60            2         0.72                      3G21   
...................................................AGCAGCATTGTACAGcGCTAT................     41582_6_0_0_0_0_7       MATURE           13         3.02            6         3.97            7         2.51                      15C5   
...................................................AGCAGCATTGTACAGGGCTATt...............    38451_2_0_0_0_0_10       MATURE           12         2.79            2         1.32           10         3.58                        21   
...................................................AGCAGCATTGTACAGGGCaAT................     20452_6_0_0_0_0_6       MATURE           12         2.79            6         3.97            6         2.15                      18A2   
....................................................GCAGCATTGTACAGGGCTAT................     38757_3_0_0_0_0_7       MATURE           10         2.33            3         1.99            7         2.51                        20   
...................................................AGCAGCATTGTACAGtGCTAT................     39107_3_0_0_0_0_6       MATURE            9         2.09            3         1.99            6         2.15                      15T5   
...................................................AGCAGCATTGTACAGGGCaATCA..............     43594_0_0_0_0_0_9       MATURE            9         2.09            0         0.00            9         3.23                      18A4   
...................................................AGCAGCATTGTACAGGGCTAT................     30991_1_0_0_0_0_7       MATURE            8         1.86            1         0.66            7         2.51                        21   
...................................................AGCAGCATTGTACAGGGCTATa...............     29331_3_0_0_0_0_5       MATURE            8         1.86            3         1.99            5         1.79                        21   
...................................................AGCAGCATTGTACAGGaCTATC...............     41433_3_0_0_0_0_3       MATURE            6         1.40            3         1.99            3         1.08                      16A5   
...................................................AGCAGCATTGTACAGGGCTATCc..............     24737_1_0_0_0_0_4       MATURE            5         1.16            1         0.66            4         1.43                        22   
.....................................................CAGCATTGTACAGGGCTAT................     34803_4_0_0_0_0_1       MATURE            5         1.16            4         2.65            1         0.36                        19   
....................................................GCAGCATTGTACAGGGCTATCA..............     33775_1_0_0_0_0_4       MATURE            5         1.16            1         0.66            4         1.43                        22   
...................................................AGCAGCATTGTACAGGGaTATCA..............     31636_2_0_0_0_0_3       MATURE            5         1.16            2         1.32            3         1.08                      17A5   
...................................................AGCAGCATTGTACAGGGCTATC...............     40736_1_0_0_0_0_4       MATURE            5         1.16            1         0.66            4         1.43                        22   
...................................................AGCAGCATTGTACAGGGgTATCA..............     41282_1_0_0_0_0_3       MATURE            4         0.93            1         0.66            3         1.08                      17G5   
...................................................AGCAGCATTGTACAGGGCTATCAAt............     33387_2_0_0_0_0_2       MATURE            4         0.93            2         1.32            2         0.72                        24   
..................................................AAGCAGCATTGTACAGGGCTATCA..............     40735_1_0_0_0_0_3       MATURE            4         0.93            1         0.66            3         1.08                        24   
...................................................AGCAGCATTGTACAGGGCaATCt..............     26110_1_0_0_0_0_3       MATURE            4         0.93            1         0.66            3         1.08                      18A3   
...................................................AGCAGCATTGTACAGGGCcATCA..............     34288_1_0_0_0_0_3       MATURE            4         0.93            1         0.66            3         1.08                      18C4   
...................................................AGCAGCATTGTACAGGGtTATCA..............      7306_0_0_0_0_0_3       MATURE            3         0.70            0         0.00            3         1.08                      17T5   
...................................................AGCAGCATTGTACAGGGCTATCg..............     22255_0_0_0_0_0_3       MATURE            3         0.70            0         0.00            3         1.08                        22   
...................................................AGCAGCATTGTACAGGGCcATg...............     41007_1_0_0_0_0_2       MATURE            3         0.70            1         0.66            2         0.72                      18C2   
...................................................AGCAGCATTGTACAGGGCTATtAA.............     43091_0_0_0_0_0_3       MATURE            3         0.70            0         0.00            3         1.08                      21T2   
...................................................AGCAGCATTGTACAGGGaTATCt..............     29903_1_0_0_0_0_2       MATURE            3         0.70            1         0.66            2         0.72                      17A4   
...................................................AGCAGCATTGTACAGGGCTATCAc.............     31121_1_0_0_0_0_2       MATURE            3         0.70            1         0.66            2         0.72                        23   
...................................................AGCAGCATTGTACAGGGCTATCAA.............     15707_0_0_0_0_0_3       MATURE            3         0.70            0         0.00            3         1.08                        24   
...................................................AGCAGCATTGTACAGGtCTAT................     24929_1_0_0_0_0_2       MATURE            3         0.70            1         0.66            2         0.72                      16T4   
....................................................GCAGCATTGTACAGGGCTATCt..............     23259_2_0_0_0_0_1       MATURE            3         0.70            2         1.32            1         0.36                        21   
...................................................AGCAGCATTGTACAGGaCTATt...............      8278_1_0_0_0_0_2       MATURE            3         0.70            1         0.66            2         0.72                      16A4   
..................................................AAGCAGCATTGTACAGGGCaATCA..............     21252_1_0_0_0_0_2       MATURE            3         0.70            1         0.66            2         0.72                      19A4   
...................................................AGCAGCATTGTACAGGGCT..................     10941_0_0_0_0_0_3       MATURE            3         0.70            0         0.00            3         1.08                        19   
...................................................AGCAGCATTGTACAGGGtTAT................     43318_2_0_0_0_0_1       MATURE            3         0.70            2         1.32            1         0.36                      17T3   
...................................................AGCAGCATTGTACAGGGtTATCt..............     12470_2_0_0_0_0_0       MATURE            2         0.47            2         1.32            0         0.00                      17T4   
...................................................AGCAGCATTGTACAGGGCTATCAAA............     14659_0_0_0_0_0_2       MATURE            2         0.47            0         0.00            2         0.72                        25   
...................................................AGCAGCATTGTACAGGtCTATt...............       269_2_0_0_0_0_0       MATURE            2         0.47            2         1.32            0         0.00                      16T4   
...................................................AGCAGCATTGTACAGGaCTATa...............     39640_1_0_0_0_0_1       MATURE            2         0.47            1         0.66            1         0.36                      16A4   
...................................................AGCAGCATTGTACAGGGCTAgCAt.............     22432_0_0_0_0_0_2       MATURE            2         0.47            0         0.00            2         0.72                      20G2   
...................................................AGCAGCATTGTACAGGGCTATaAAt............     12281_1_0_0_0_0_1       MATURE            2         0.47            1         0.66            1         0.36                      21A2   
..................................................AAGCAGCATTGTACAGGGCTATa...............     38775_1_0_0_0_0_1       MATURE            2         0.47            1         0.66            1         0.36                        22   
....................................................GCAGCATTGTACAGGGCTAa................     23466_0_0_0_0_0_2       MATURE            2         0.47            0         0.00            2         0.72                        19   
...................................................AGCAGCATTGTACAGGGaTATCg..............      9382_1_0_0_0_0_1       MATURE            2         0.47            1         0.66            1         0.36                      17A4   
.....................................................CAGCATTGTACAGGGCTATCA..............     38107_0_0_0_0_0_2       MATURE            2         0.47            0         0.00            2         0.72                        21   
...................................................AGCAGCATTGTACAGGtCTATC...............     22792_1_0_0_0_0_1       MATURE            2         0.47            1         0.66            1         0.36                      16T5   
...................................................AGCAGCATTGTACAGGGCTATaAA.............     25282_0_0_0_0_0_2       MATURE            2         0.47            0         0.00            2         0.72                      21A2   
...................................................AGCAGCATTGTACAGGGCaATCAt.............     23786_1_0_0_0_0_1       MATURE            2         0.47            1         0.66            1         0.36                      18A4   
...................................................AGCAGCATTGTACAGGGCTAaCAt.............     31359_0_0_0_0_0_2       MATURE            2         0.47            0         0.00            2         0.72                      20A2   
...................................................AGCAGCATTGTACAGGGgTATCt..............     37848_1_0_0_0_0_1       MATURE            2         0.47            1         0.66            1         0.36                      17G4   
...................................................AGCAGCATTGTACAGGGCTAcCAt.............     27407_0_0_0_0_0_2       MATURE            2         0.47            0         0.00            2         0.72                      20C2   
...................................................AGCAGCATTGTACAGGGCaATCg..............     15294_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.36                      18A3   
....................................................GCAGCATTGTACAGGGaTATCA..............     34787_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.36                      16A5   
...................................................AGCAGCATTGTACAGGGCTAaCAAt............      1163_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.36                      20A3   
.................................................CAAGCAGCATTGTACAGGGCTATCA..............     19963_1_0_0_0_0_0       MATURE            1         0.23            1         0.66            0         0.00                        25   
....................................................GCAGCATTGTACAGGGCaATCA..............     35704_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.36                      17A4   
..................................................AAGCAGCATTGTACAGGGCTATCAt.............     15582_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.36                        24   
...................................................AGCAGCATTGTACAGGGaTATC...............     30069_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.36                      17A4   
..................................................AAGCAGCATTGTACAGGGCTATCt..............     20588_1_0_0_0_0_0       MATURE            1         0.23            1         0.66            0         0.00                        23   
...................................................AGgAGCATTGTACAGGGCTAT................     42761_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.36                      2G18   
..................................................AAGCAGCATTGTACAGGGCaATCAA.............       892_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.36                      19A5   
....................................................GCAGCATTGTACAGGGCTAgCAt.............     14463_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.36                      19G2   
....................................................GCAGCATTGTACAGGGtTATCc..............      4700_1_0_0_0_0_0       MATURE            1         0.23            1         0.66            0         0.00                      16T4   
...................................................AGCAGCATTGTAtAGGGCTATCg..............     10745_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.36                      12T9   
..................................................AAGCAGCATTGTACAGGGCaATa...............     15852_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.36                      19A2   
...................................................AGCAGCATTGTACAGGGCgATCt..............     31536_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.36                      18G3   
...................................................AGCAGCATTGTACAGGGCTcTCAA.............     32841_1_0_0_0_0_0       MATURE            1         0.23            1         0.66            0         0.00                      19C4   
....................................................GCAGCATTGTACAGGGCaATCAt.............     28623_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.36                      17A4   
...................................................AGCAGCATTGTACAGGGCaATCAA.............     27379_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.36                      18A5   
...................................................AGCAGCATTGTACAGGGCTAcCAAt............     28776_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.36                      20C3   
...................................................AGtAGCATTGTACAGGGCTATC...............     39821_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.36                      2T19   
..................................................AAGCAGCATTGTACAGGGCcATC...............     22978_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.36                      19C3   
....................................................GCAGCATTGTACAGGGaTATC...............     35355_1_0_0_0_0_0       MATURE            1         0.23            1         0.66            0         0.00                      16A4   
...................................................AGCAGCATTGTACAGGGCTATCcAA............     12996_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.36                      22C2   
...................................................AGCAGCATTGTACAGGGCcATCAAt............     24896_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.36                      18C5   
...................................................AGCAGCATTGTACAGGGCTAcCAA.............     41603_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.36                      20C3   
..................................................AAcCAGCATTGTACAGGGCTATa...............     19182_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.36                      2C19   
..................................................AAGCAGCATTGTACAGGGCTATC...............      3385_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.36                        23   
..................................................AAGCAGCATTGTACAGGGaTATCA..............     18392_1_0_0_0_0_0       MATURE            1         0.23            1         0.66            0         0.00                      18A5   
...................................................AGCAGCATTGTACAGGGCcATCAt.............     43175_1_0_0_0_0_0       MATURE            1         0.23            1         0.66            0         0.00                      18C4   
...................................................AGCgGCATTGTACAGGGCTATCA..............     32942_1_0_0_0_0_0       MATURE            1         0.23            1         0.66            0         0.00                      3G19   
....................................................GCAGCATTGTACAGGGCTAcCAt.............     34993_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.36                      19C2   
...................................................AGCAGCATTGTACAGGGCaATC...............     14304_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.36                      18A3   
...................................................AGCAGCATTGTACAGGGCTATtAAg............       640_1_0_0_0_0_0       MATURE            1         0.23            1         0.66            0         0.00                      21T2   
...................................................AGCAGCATTGTACAGGGCcAT................     31760_1_0_0_0_0_0       MATURE            1         0.23            1         0.66            0         0.00                      18C2   
...................................................AGCAGCATTGTACAGGGCTAcCA..............       500_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.36                      20C2   
...................................................AGCAGaATTGTACAGGGCTATCA..............     11100_1_0_0_0_0_0       MATURE            1         0.23            1         0.66            0         0.00                      5A17   
...................................................AGCAGCATTGTACAGGGtTATCc..............      2900_1_0_0_0_0_0       MATURE            1         0.23            1         0.66            0         0.00                      17T4   
...................................................AGCAGCATTGTACAGGGCgATCA..............     21901_1_0_0_0_0_0       MATURE            1         0.23            1         0.66            0         0.00                      18G4   
.....................................................CAGCATTGTACAGGGtTATCA..............     36419_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.36                      15T5   
.....................................................CAGCATTGTACAGGGCTATCt..............      3051_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.36                        20   
....................................................GCAGCATTGTACAGGGCTATCc..............      2028_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.36                        21   
...................................................AGCAGCATTGTACAGGGCcATCt..............     14990_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.36                      18C3   
...................................................AGCAGCATTGTACAGGGCgATt...............     19335_1_0_0_0_0_0       MATURE            1         0.23            1         0.66            0         0.00                      18G2   
...................................................AGCAGCATTGTACAGGGCTATaAAA............     33098_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.36                      21A3   
...................................................AGCAGCATTGTACAGGGCTAgCAc.............     36154_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.36                      20G2   
..................................................AAGCAGCATTGTACAGGGCT..................     31016_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.36                        20   
...................................................AGCAGCATTGTACAGGGCgATCAt.............     25181_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.36                      18G4   
..................................................AAGCAGCATTGTACAGGGCaATCAt.............      4833_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.36                      19A4   
...................................................AGCAGCATcGTACAGGGCTATCA..............     39329_1_0_0_0_0_0       MATURE            1         0.23            1         0.66            0         0.00                      8C14   
.....................................................CAGCATTGTACAGGGCTATa...............     14691_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.36                        19   
...................................................AGCAGCATTGTACAGGGtTATt...............     36087_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.36                      17T3   
                                                                                                                              ----------                ----------                ----------   
                                                                                                                                     430                       151                       279                                          
                                                                                                                                                           (35.12)                   (64.88)                                       




*** OTHER ***
_______________________________________________________________________________________
TTCTCTGTGCTTTCAGCTTCTTTACAGTGTTGCCTTGTGGCATGGAGTTCAAGCAGCATTGTACAGGGCTATCAAAGCACAGAGAGC REF                  19                   34895177 - 34895263  
                                                   AGCAGCATTGTACAGGGCTATCA              MATURE               19                   34895229 - 34895337  mmu-miR-107          -                    
_______________________________________________________________________________________

                                                                                   -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
..............AGCTTCTTTACAGTGTTaCCTTG...................................................   32951_1_0_0_0_0_3        OTHER            4        33.33            1        16.67            3        50.00                      17A5   
..............AGCTTCTTTACAGTGTTGCCTTa...................................................   26133_2_0_0_0_0_0        OTHER            2        16.67            2        33.33            0         0.00                        22   
..............AGCTTCTTTACAGTGTTGCCTT....................................................   15318_1_0_0_0_0_0        OTHER            1         8.33            1        16.67            0         0.00                        22   
..............AGCTTCTTTACAGTGTTtCCTTt...................................................    4257_1_0_0_0_0_0        OTHER            1         8.33            1        16.67            0         0.00                      17T4   
..............AGCTTCTTTACAGTGTTGCCaTG...................................................   41406_0_0_0_0_0_1        OTHER            1         8.33            0         0.00            1        16.67                      20A2   
.............CAGCTTCTTTACAGTGTTaCCT.....................................................    5988_1_0_0_0_0_0        OTHER            1         8.33            1        16.67            0         0.00                      18A3   
..............AGCTTCTTTACAGTGTTGCCTTt...................................................    8853_0_0_0_0_0_1        OTHER            1         8.33            0         0.00            1        16.67                        22   
..............AGCTTCTTTACAGTGTTtCCTTG...................................................    5188_0_0_0_0_0_1        OTHER            1         8.33            0         0.00            1        16.67                      17T5   
                                                                                                                            ----------                ----------                ----------   
                                                                                                                                    12                         6                         6                                          
                                                                                                                                                         (50.00)                   (50.00)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE             151             279             430          97.29%
          OTHER               6               6              12           2.71%
                     ----------      ----------      ----------                
                            157             285             442                



[END]
