[BEGIN]
REFERENCE HAIRPIN
************************************************************************************************************
ID : mmu-mir-107
DESCRIPTION : mmu-mir-107 MI0000684 Mus musculus miR-107 stem-loop
CHROMOSOME : 19
SPAN : 34895177 - 34895263
LENGTH : 87
SEQUENCE : TTCTCTGTGCTTTCAGCTTCTTTACAGTGTTGCCTTGTGGCATGGAGTTCAAGCAGCATTGTACAGGGCTATCAAAGCACAGAGAGC
OVERHANG THRESHOLD : 40%
************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-107
ACCID : MI0000684
PARENT : mmu-mir-107
CHROMOSOME : 19
START : 34895177
STOP : 34895263
OFFSET : 52..74
SEQUENCE : AGCAGCATTGTACAGGGCTATCA
STRAND : -
******************************
*** MATURE ***
_______________________________________________________________________________________
TTCTCTGTGCTTTCAGCTTCTTTACAGTGTTGCCTTGTGGCATGGAGTTCAAGCAGCATTGTACAGGGCTATCAAAGCACAGAGAGC REF 19 34895177 - 34895263
AGCAGCATTGTACAGGGCTATCA MATURE 19 34895229 - 34895337 mmu-miR-107 -
_______________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...................................................AGCAGCATTGTACAGGGCTATCA.............. 30292_10_0_0_0_0_43 MATURE 53 12.33 10 6.62 43 15.41 23
...................................................AGCAGCATTGTACAGGGCTATCt.............. 42094_16_0_0_0_0_15 MATURE 31 7.21 16 10.60 15 5.38 22
...................................................AGCAGCATTGTACAGaGCTAT................ 35641_16_0_0_0_0_11 MATURE 27 6.28 16 10.60 11 3.94 15A5
...................................................AGCAGCATTGTACAGGaCTAT................ 42897_11_0_0_0_0_14 MATURE 25 5.81 11 7.28 14 5.02 16A4
...................................................AGCAGCATTGTACAGGGCTATCAt............. 29747_4_0_0_0_0_18 MATURE 22 5.12 4 2.65 18 6.45 23
...............................................TTCgAGCAGCATTGTACAGGGCTAT................ 6622_16_0_0_0_0_2 MATURE 18 4.19 16 10.60 2 0.72 3G21
...................................................AGCAGCATTGTACAGcGCTAT................ 41582_6_0_0_0_0_7 MATURE 13 3.02 6 3.97 7 2.51 15C5
...................................................AGCAGCATTGTACAGGGCTATt............... 38451_2_0_0_0_0_10 MATURE 12 2.79 2 1.32 10 3.58 21
...................................................AGCAGCATTGTACAGGGCaAT................ 20452_6_0_0_0_0_6 MATURE 12 2.79 6 3.97 6 2.15 18A2
....................................................GCAGCATTGTACAGGGCTAT................ 38757_3_0_0_0_0_7 MATURE 10 2.33 3 1.99 7 2.51 20
...................................................AGCAGCATTGTACAGtGCTAT................ 39107_3_0_0_0_0_6 MATURE 9 2.09 3 1.99 6 2.15 15T5
...................................................AGCAGCATTGTACAGGGCaATCA.............. 43594_0_0_0_0_0_9 MATURE 9 2.09 0 0.00 9 3.23 18A4
...................................................AGCAGCATTGTACAGGGCTAT................ 30991_1_0_0_0_0_7 MATURE 8 1.86 1 0.66 7 2.51 21
...................................................AGCAGCATTGTACAGGGCTATa............... 29331_3_0_0_0_0_5 MATURE 8 1.86 3 1.99 5 1.79 21
...................................................AGCAGCATTGTACAGGaCTATC............... 41433_3_0_0_0_0_3 MATURE 6 1.40 3 1.99 3 1.08 16A5
...................................................AGCAGCATTGTACAGGGCTATCc.............. 24737_1_0_0_0_0_4 MATURE 5 1.16 1 0.66 4 1.43 22
.....................................................CAGCATTGTACAGGGCTAT................ 34803_4_0_0_0_0_1 MATURE 5 1.16 4 2.65 1 0.36 19
....................................................GCAGCATTGTACAGGGCTATCA.............. 33775_1_0_0_0_0_4 MATURE 5 1.16 1 0.66 4 1.43 22
...................................................AGCAGCATTGTACAGGGaTATCA.............. 31636_2_0_0_0_0_3 MATURE 5 1.16 2 1.32 3 1.08 17A5
...................................................AGCAGCATTGTACAGGGCTATC............... 40736_1_0_0_0_0_4 MATURE 5 1.16 1 0.66 4 1.43 22
...................................................AGCAGCATTGTACAGGGgTATCA.............. 41282_1_0_0_0_0_3 MATURE 4 0.93 1 0.66 3 1.08 17G5
...................................................AGCAGCATTGTACAGGGCTATCAAt............ 33387_2_0_0_0_0_2 MATURE 4 0.93 2 1.32 2 0.72 24
..................................................AAGCAGCATTGTACAGGGCTATCA.............. 40735_1_0_0_0_0_3 MATURE 4 0.93 1 0.66 3 1.08 24
...................................................AGCAGCATTGTACAGGGCaATCt.............. 26110_1_0_0_0_0_3 MATURE 4 0.93 1 0.66 3 1.08 18A3
...................................................AGCAGCATTGTACAGGGCcATCA.............. 34288_1_0_0_0_0_3 MATURE 4 0.93 1 0.66 3 1.08 18C4
...................................................AGCAGCATTGTACAGGGtTATCA.............. 7306_0_0_0_0_0_3 MATURE 3 0.70 0 0.00 3 1.08 17T5
...................................................AGCAGCATTGTACAGGGCTATCg.............. 22255_0_0_0_0_0_3 MATURE 3 0.70 0 0.00 3 1.08 22
...................................................AGCAGCATTGTACAGGGCcATg............... 41007_1_0_0_0_0_2 MATURE 3 0.70 1 0.66 2 0.72 18C2
...................................................AGCAGCATTGTACAGGGCTATtAA............. 43091_0_0_0_0_0_3 MATURE 3 0.70 0 0.00 3 1.08 21T2
...................................................AGCAGCATTGTACAGGGaTATCt.............. 29903_1_0_0_0_0_2 MATURE 3 0.70 1 0.66 2 0.72 17A4
...................................................AGCAGCATTGTACAGGGCTATCAc............. 31121_1_0_0_0_0_2 MATURE 3 0.70 1 0.66 2 0.72 23
...................................................AGCAGCATTGTACAGGGCTATCAA............. 15707_0_0_0_0_0_3 MATURE 3 0.70 0 0.00 3 1.08 24
...................................................AGCAGCATTGTACAGGtCTAT................ 24929_1_0_0_0_0_2 MATURE 3 0.70 1 0.66 2 0.72 16T4
....................................................GCAGCATTGTACAGGGCTATCt.............. 23259_2_0_0_0_0_1 MATURE 3 0.70 2 1.32 1 0.36 21
...................................................AGCAGCATTGTACAGGaCTATt............... 8278_1_0_0_0_0_2 MATURE 3 0.70 1 0.66 2 0.72 16A4
..................................................AAGCAGCATTGTACAGGGCaATCA.............. 21252_1_0_0_0_0_2 MATURE 3 0.70 1 0.66 2 0.72 19A4
...................................................AGCAGCATTGTACAGGGCT.................. 10941_0_0_0_0_0_3 MATURE 3 0.70 0 0.00 3 1.08 19
...................................................AGCAGCATTGTACAGGGtTAT................ 43318_2_0_0_0_0_1 MATURE 3 0.70 2 1.32 1 0.36 17T3
...................................................AGCAGCATTGTACAGGGtTATCt.............. 12470_2_0_0_0_0_0 MATURE 2 0.47 2 1.32 0 0.00 17T4
...................................................AGCAGCATTGTACAGGGCTATCAAA............ 14659_0_0_0_0_0_2 MATURE 2 0.47 0 0.00 2 0.72 25
...................................................AGCAGCATTGTACAGGtCTATt............... 269_2_0_0_0_0_0 MATURE 2 0.47 2 1.32 0 0.00 16T4
...................................................AGCAGCATTGTACAGGaCTATa............... 39640_1_0_0_0_0_1 MATURE 2 0.47 1 0.66 1 0.36 16A4
...................................................AGCAGCATTGTACAGGGCTAgCAt............. 22432_0_0_0_0_0_2 MATURE 2 0.47 0 0.00 2 0.72 20G2
...................................................AGCAGCATTGTACAGGGCTATaAAt............ 12281_1_0_0_0_0_1 MATURE 2 0.47 1 0.66 1 0.36 21A2
..................................................AAGCAGCATTGTACAGGGCTATa............... 38775_1_0_0_0_0_1 MATURE 2 0.47 1 0.66 1 0.36 22
....................................................GCAGCATTGTACAGGGCTAa................ 23466_0_0_0_0_0_2 MATURE 2 0.47 0 0.00 2 0.72 19
...................................................AGCAGCATTGTACAGGGaTATCg.............. 9382_1_0_0_0_0_1 MATURE 2 0.47 1 0.66 1 0.36 17A4
.....................................................CAGCATTGTACAGGGCTATCA.............. 38107_0_0_0_0_0_2 MATURE 2 0.47 0 0.00 2 0.72 21
...................................................AGCAGCATTGTACAGGtCTATC............... 22792_1_0_0_0_0_1 MATURE 2 0.47 1 0.66 1 0.36 16T5
...................................................AGCAGCATTGTACAGGGCTATaAA............. 25282_0_0_0_0_0_2 MATURE 2 0.47 0 0.00 2 0.72 21A2
...................................................AGCAGCATTGTACAGGGCaATCAt............. 23786_1_0_0_0_0_1 MATURE 2 0.47 1 0.66 1 0.36 18A4
...................................................AGCAGCATTGTACAGGGCTAaCAt............. 31359_0_0_0_0_0_2 MATURE 2 0.47 0 0.00 2 0.72 20A2
...................................................AGCAGCATTGTACAGGGgTATCt.............. 37848_1_0_0_0_0_1 MATURE 2 0.47 1 0.66 1 0.36 17G4
...................................................AGCAGCATTGTACAGGGCTAcCAt............. 27407_0_0_0_0_0_2 MATURE 2 0.47 0 0.00 2 0.72 20C2
...................................................AGCAGCATTGTACAGGGCaATCg.............. 15294_0_0_0_0_0_1 MATURE 1 0.23 0 0.00 1 0.36 18A3
....................................................GCAGCATTGTACAGGGaTATCA.............. 34787_0_0_0_0_0_1 MATURE 1 0.23 0 0.00 1 0.36 16A5
...................................................AGCAGCATTGTACAGGGCTAaCAAt............ 1163_0_0_0_0_0_1 MATURE 1 0.23 0 0.00 1 0.36 20A3
.................................................CAAGCAGCATTGTACAGGGCTATCA.............. 19963_1_0_0_0_0_0 MATURE 1 0.23 1 0.66 0 0.00 25
....................................................GCAGCATTGTACAGGGCaATCA.............. 35704_0_0_0_0_0_1 MATURE 1 0.23 0 0.00 1 0.36 17A4
..................................................AAGCAGCATTGTACAGGGCTATCAt............. 15582_0_0_0_0_0_1 MATURE 1 0.23 0 0.00 1 0.36 24
...................................................AGCAGCATTGTACAGGGaTATC............... 30069_0_0_0_0_0_1 MATURE 1 0.23 0 0.00 1 0.36 17A4
..................................................AAGCAGCATTGTACAGGGCTATCt.............. 20588_1_0_0_0_0_0 MATURE 1 0.23 1 0.66 0 0.00 23
...................................................AGgAGCATTGTACAGGGCTAT................ 42761_0_0_0_0_0_1 MATURE 1 0.23 0 0.00 1 0.36 2G18
..................................................AAGCAGCATTGTACAGGGCaATCAA............. 892_0_0_0_0_0_1 MATURE 1 0.23 0 0.00 1 0.36 19A5
....................................................GCAGCATTGTACAGGGCTAgCAt............. 14463_0_0_0_0_0_1 MATURE 1 0.23 0 0.00 1 0.36 19G2
....................................................GCAGCATTGTACAGGGtTATCc.............. 4700_1_0_0_0_0_0 MATURE 1 0.23 1 0.66 0 0.00 16T4
...................................................AGCAGCATTGTAtAGGGCTATCg.............. 10745_0_0_0_0_0_1 MATURE 1 0.23 0 0.00 1 0.36 12T9
..................................................AAGCAGCATTGTACAGGGCaATa............... 15852_0_0_0_0_0_1 MATURE 1 0.23 0 0.00 1 0.36 19A2
...................................................AGCAGCATTGTACAGGGCgATCt.............. 31536_0_0_0_0_0_1 MATURE 1 0.23 0 0.00 1 0.36 18G3
...................................................AGCAGCATTGTACAGGGCTcTCAA............. 32841_1_0_0_0_0_0 MATURE 1 0.23 1 0.66 0 0.00 19C4
....................................................GCAGCATTGTACAGGGCaATCAt............. 28623_0_0_0_0_0_1 MATURE 1 0.23 0 0.00 1 0.36 17A4
...................................................AGCAGCATTGTACAGGGCaATCAA............. 27379_0_0_0_0_0_1 MATURE 1 0.23 0 0.00 1 0.36 18A5
...................................................AGCAGCATTGTACAGGGCTAcCAAt............ 28776_0_0_0_0_0_1 MATURE 1 0.23 0 0.00 1 0.36 20C3
...................................................AGtAGCATTGTACAGGGCTATC............... 39821_0_0_0_0_0_1 MATURE 1 0.23 0 0.00 1 0.36 2T19
..................................................AAGCAGCATTGTACAGGGCcATC............... 22978_0_0_0_0_0_1 MATURE 1 0.23 0 0.00 1 0.36 19C3
....................................................GCAGCATTGTACAGGGaTATC............... 35355_1_0_0_0_0_0 MATURE 1 0.23 1 0.66 0 0.00 16A4
...................................................AGCAGCATTGTACAGGGCTATCcAA............ 12996_0_0_0_0_0_1 MATURE 1 0.23 0 0.00 1 0.36 22C2
...................................................AGCAGCATTGTACAGGGCcATCAAt............ 24896_0_0_0_0_0_1 MATURE 1 0.23 0 0.00 1 0.36 18C5
...................................................AGCAGCATTGTACAGGGCTAcCAA............. 41603_0_0_0_0_0_1 MATURE 1 0.23 0 0.00 1 0.36 20C3
..................................................AAcCAGCATTGTACAGGGCTATa............... 19182_0_0_0_0_0_1 MATURE 1 0.23 0 0.00 1 0.36 2C19
..................................................AAGCAGCATTGTACAGGGCTATC............... 3385_0_0_0_0_0_1 MATURE 1 0.23 0 0.00 1 0.36 23
..................................................AAGCAGCATTGTACAGGGaTATCA.............. 18392_1_0_0_0_0_0 MATURE 1 0.23 1 0.66 0 0.00 18A5
...................................................AGCAGCATTGTACAGGGCcATCAt............. 43175_1_0_0_0_0_0 MATURE 1 0.23 1 0.66 0 0.00 18C4
...................................................AGCgGCATTGTACAGGGCTATCA.............. 32942_1_0_0_0_0_0 MATURE 1 0.23 1 0.66 0 0.00 3G19
....................................................GCAGCATTGTACAGGGCTAcCAt............. 34993_0_0_0_0_0_1 MATURE 1 0.23 0 0.00 1 0.36 19C2
...................................................AGCAGCATTGTACAGGGCaATC............... 14304_0_0_0_0_0_1 MATURE 1 0.23 0 0.00 1 0.36 18A3
...................................................AGCAGCATTGTACAGGGCTATtAAg............ 640_1_0_0_0_0_0 MATURE 1 0.23 1 0.66 0 0.00 21T2
...................................................AGCAGCATTGTACAGGGCcAT................ 31760_1_0_0_0_0_0 MATURE 1 0.23 1 0.66 0 0.00 18C2
...................................................AGCAGCATTGTACAGGGCTAcCA.............. 500_0_0_0_0_0_1 MATURE 1 0.23 0 0.00 1 0.36 20C2
...................................................AGCAGaATTGTACAGGGCTATCA.............. 11100_1_0_0_0_0_0 MATURE 1 0.23 1 0.66 0 0.00 5A17
...................................................AGCAGCATTGTACAGGGtTATCc.............. 2900_1_0_0_0_0_0 MATURE 1 0.23 1 0.66 0 0.00 17T4
...................................................AGCAGCATTGTACAGGGCgATCA.............. 21901_1_0_0_0_0_0 MATURE 1 0.23 1 0.66 0 0.00 18G4
.....................................................CAGCATTGTACAGGGtTATCA.............. 36419_0_0_0_0_0_1 MATURE 1 0.23 0 0.00 1 0.36 15T5
.....................................................CAGCATTGTACAGGGCTATCt.............. 3051_0_0_0_0_0_1 MATURE 1 0.23 0 0.00 1 0.36 20
....................................................GCAGCATTGTACAGGGCTATCc.............. 2028_0_0_0_0_0_1 MATURE 1 0.23 0 0.00 1 0.36 21
...................................................AGCAGCATTGTACAGGGCcATCt.............. 14990_0_0_0_0_0_1 MATURE 1 0.23 0 0.00 1 0.36 18C3
...................................................AGCAGCATTGTACAGGGCgATt............... 19335_1_0_0_0_0_0 MATURE 1 0.23 1 0.66 0 0.00 18G2
...................................................AGCAGCATTGTACAGGGCTATaAAA............ 33098_0_0_0_0_0_1 MATURE 1 0.23 0 0.00 1 0.36 21A3
...................................................AGCAGCATTGTACAGGGCTAgCAc............. 36154_0_0_0_0_0_1 MATURE 1 0.23 0 0.00 1 0.36 20G2
..................................................AAGCAGCATTGTACAGGGCT.................. 31016_0_0_0_0_0_1 MATURE 1 0.23 0 0.00 1 0.36 20
...................................................AGCAGCATTGTACAGGGCgATCAt............. 25181_0_0_0_0_0_1 MATURE 1 0.23 0 0.00 1 0.36 18G4
..................................................AAGCAGCATTGTACAGGGCaATCAt............. 4833_0_0_0_0_0_1 MATURE 1 0.23 0 0.00 1 0.36 19A4
...................................................AGCAGCATcGTACAGGGCTATCA.............. 39329_1_0_0_0_0_0 MATURE 1 0.23 1 0.66 0 0.00 8C14
.....................................................CAGCATTGTACAGGGCTATa............... 14691_0_0_0_0_0_1 MATURE 1 0.23 0 0.00 1 0.36 19
...................................................AGCAGCATTGTACAGGGtTATt............... 36087_0_0_0_0_0_1 MATURE 1 0.23 0 0.00 1 0.36 17T3
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430 151 279
(35.12) (64.88)
*** OTHER ***
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TTCTCTGTGCTTTCAGCTTCTTTACAGTGTTGCCTTGTGGCATGGAGTTCAAGCAGCATTGTACAGGGCTATCAAAGCACAGAGAGC REF 19 34895177 - 34895263
AGCAGCATTGTACAGGGCTATCA MATURE 19 34895229 - 34895337 mmu-miR-107 -
_______________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..............AGCTTCTTTACAGTGTTaCCTTG................................................... 32951_1_0_0_0_0_3 OTHER 4 33.33 1 16.67 3 50.00 17A5
..............AGCTTCTTTACAGTGTTGCCTTa................................................... 26133_2_0_0_0_0_0 OTHER 2 16.67 2 33.33 0 0.00 22
..............AGCTTCTTTACAGTGTTGCCTT.................................................... 15318_1_0_0_0_0_0 OTHER 1 8.33 1 16.67 0 0.00 22
..............AGCTTCTTTACAGTGTTtCCTTt................................................... 4257_1_0_0_0_0_0 OTHER 1 8.33 1 16.67 0 0.00 17T4
..............AGCTTCTTTACAGTGTTGCCaTG................................................... 41406_0_0_0_0_0_1 OTHER 1 8.33 0 0.00 1 16.67 20A2
.............CAGCTTCTTTACAGTGTTaCCT..................................................... 5988_1_0_0_0_0_0 OTHER 1 8.33 1 16.67 0 0.00 18A3
..............AGCTTCTTTACAGTGTTGCCTTt................................................... 8853_0_0_0_0_0_1 OTHER 1 8.33 0 0.00 1 16.67 22
..............AGCTTCTTTACAGTGTTtCCTTG................................................... 5188_0_0_0_0_0_1 OTHER 1 8.33 0 0.00 1 16.67 17T5
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12 6 6
(50.00) (50.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 151 279 430 97.29%
OTHER 6 6 12 2.71%
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157 285 442
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