[BEGIN]
REFERENCE HAIRPIN
**************************************************************************************
ID : mmu-mir-106a
DESCRIPTION : mmu-mir-106a MI0000406 Mus musculus miR-106a stem-loop
CHROMOSOME : X
SPAN : 50095680 - 50095744
LENGTH : 65
SEQUENCE : ATGTCAAAGTGCTAACAGTGCAGGTAGCTTTTTGAGTTCTACTGCAGTGCCAGCACTTCTTACAT
OVERHANG THRESHOLD : 40%
**************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-106a
ACCID : MI0000406
PARENT : mmu-mir-106a
CHROMOSOME : X
START : 50095680
STOP : 50095744
OFFSET : 5..27
SEQUENCE : CAAAGTGCTAACAGTGCAGGTAG
STRAND : -
******************************
*** MATURE ***
_________________________________________________________________
ATGTCAAAGTGCTAACAGTGCAGGTAGCTTTTTGAGTTCTACTGCAGTGCCAGCACTTCTTACAT REF X 50095680 - 50095744
CAAAGTGCTAACAGTGCAGGTAG MATURE X 50095685 - 50095771 mmu-miR-106a -
_________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
....CAAAGTGCTAACAGTGCAGGTAt....................................... 36676_110_0_0_0_0_97 MATURE 207 23.34 110 26.00 97 20.91 22
....CAAAGTGCTAACAGTGCAGGTAa....................................... 34922_39_0_0_0_0_47 MATURE 86 9.70 39 9.22 47 10.13 22
....CAAAGTGCTAACAGTGCAGGT......................................... 36216_23_0_0_0_0_27 MATURE 50 5.64 23 5.44 27 5.82 21
....CAAAGTGCTAACAGTGCAGaTAt....................................... 42595_24_0_0_0_0_18 MATURE 42 4.74 24 5.67 18 3.88 19A2
....CAAAGTGCTAACAGTGCAGGTAG....................................... 40827_12_0_0_0_0_25 MATURE 37 4.17 12 2.84 25 5.39 23
....CAAAGTGCTAACAGTGCAGGTA........................................ 41619_14_0_0_0_0_17 MATURE 31 3.49 14 3.31 17 3.66 22
.....AAAGTGCTAACAGTGCAGGTAG....................................... 37480_7_0_0_0_0_22 MATURE 29 3.27 7 1.65 22 4.74 22
....CAAAGTGCTAACAGTGCtGGTAt....................................... 32737_15_0_0_0_0_14 MATURE 29 3.27 15 3.55 14 3.02 17T4
.....AAAGTGCTAACAGTGCAGGTAa....................................... 42812_16_0_0_0_0_8 MATURE 24 2.71 16 3.78 8 1.72 21
....CAAAGTGCTAACAGTaCAGGT......................................... 36776_12_0_0_0_0_10 MATURE 22 2.48 12 2.84 10 2.16 15A5
....CAAAGTGCTAACAGTGCgGGTAt....................................... 19810_14_0_0_0_0_7 MATURE 21 2.37 14 3.31 7 1.51 17G4
....CAAAGTGCTAACAGTGCAGaTAG....................................... 38818_11_0_0_0_0_8 MATURE 19 2.14 11 2.60 8 1.72 19A3
....CAAAGTGCTAACAGTGCAaGTAG....................................... 44123_5_0_0_0_0_13 MATURE 18 2.03 5 1.18 13 2.80 18A4
.....AAAGTGCTAACAGTGCAaGTAG....................................... 42351_5_0_0_0_0_12 MATURE 17 1.92 5 1.18 12 2.59 17A4
.....AAAGTGCTAACAGTGCAGGTAt....................................... 32243_12_0_0_0_0_3 MATURE 15 1.69 12 2.84 3 0.65 21
....CAAAGTGCTAACAGTGCcGGTAt....................................... 26770_5_0_0_0_0_6 MATURE 11 1.24 5 1.18 6 1.29 17C4
....CAAAGTGCTAACAGTGCAGGTt........................................ 41012_3_0_0_0_0_6 MATURE 9 1.01 3 0.71 6 1.29 21
....CAAAGTGCTAACAGTGCAGaTAa....................................... 15923_5_0_0_0_0_4 MATURE 9 1.01 5 1.18 4 0.86 19A2
....CAAAGTGCTAACAGTGaAGGTA........................................ 38182_5_0_0_0_0_3 MATURE 8 0.90 5 1.18 3 0.65 16A5
....CAAAGTGCTAACAGTtCAGGT......................................... 34608_2_0_0_0_0_6 MATURE 8 0.90 2 0.47 6 1.29 15T5
....CAAAGTGCTAACAGTGCAaGTAGt...................................... 36894_5_0_0_0_0_3 MATURE 8 0.90 5 1.18 3 0.65 18A4
....CAAAGTGCTAACAGTGCAGaTA........................................ 29048_2_0_0_0_0_5 MATURE 7 0.79 2 0.47 5 1.08 19A2
....CAAAGTGCTAACAGTGCAGGTAc....................................... 33573_5_0_0_0_0_2 MATURE 7 0.79 5 1.18 2 0.43 22
....CAAAGTGCTAACAGTGCgGGTAa....................................... 28930_3_0_0_0_0_4 MATURE 7 0.79 3 0.71 4 0.86 17G4
....CAAAGTGCTAACAGTGtAGGTA........................................ 40321_5_0_0_0_0_2 MATURE 7 0.79 5 1.18 2 0.43 16T5
....CAAAGTGCTAACAGTGCAcGTAGt...................................... 23455_4_0_0_0_0_2 MATURE 6 0.68 4 0.95 2 0.43 18C4
...TCAAAGTGCTAACAGTGCAGGTAt....................................... 38670_4_0_0_0_0_2 MATURE 6 0.68 4 0.95 2 0.43 23
....CAAAGTGCTAACAGTGCtGGTAa....................................... 22445_0_0_0_0_0_6 MATURE 6 0.68 0 0.00 6 1.29 17T4
....CAAAGTGCTAACAGTGgAGGTA........................................ 32030_2_0_0_0_0_3 MATURE 5 0.56 2 0.47 3 0.65 16G5
....CAAAGTGCTAACAGTGtAGGT......................................... 39586_4_0_0_0_0_1 MATURE 5 0.56 4 0.95 1 0.22 16T4
.....AAAGTGCTAACAGTGCAGGTAGa...................................... 5566_0_0_0_0_0_4 MATURE 4 0.45 0 0.00 4 0.86 22
....CAAAGTGCTAACAGTGCAGaTAc....................................... 33529_2_0_0_0_0_2 MATURE 4 0.45 2 0.47 2 0.43 19A2
.....AAAGTGCTAACAGTGCAGGTAGt...................................... 43421_1_0_0_0_0_3 MATURE 4 0.45 1 0.24 3 0.65 22
....CAAAGTGCTAACAGTGCAtGTAt....................................... 39336_3_0_0_0_0_1 MATURE 4 0.45 3 0.71 1 0.22 18T3
....CAAAGTGCTAACAGTGCAGaTAGa...................................... 22316_0_0_0_0_0_4 MATURE 4 0.45 0 0.00 4 0.86 19A3
.....AAAGTGCTAACAGTGCtGGTAG....................................... 25591_2_0_0_0_0_2 MATURE 4 0.45 2 0.47 2 0.43 16T5
....CAAAGTGCTAACAGTGCtGGTAG....................................... 36061_1_0_0_0_0_3 MATURE 4 0.45 1 0.24 3 0.65 17T5
....CAAAGTGCTAACAGTGCcGGTAa....................................... 33731_0_0_0_0_0_3 MATURE 3 0.34 0 0.00 3 0.65 17C4
....CAAAGTGCTAACAGTGgAGGT......................................... 5552_0_0_0_0_0_3 MATURE 3 0.34 0 0.00 3 0.65 16G4
.....AAAGTGCTAACAGTGCAGGT......................................... 32138_2_0_0_0_0_1 MATURE 3 0.34 2 0.47 1 0.22 20
.....AAAGTGCTAACAGTGCAtGTAG....................................... 43469_1_0_0_0_0_2 MATURE 3 0.34 1 0.24 2 0.43 17T4
.....AAAGTGCTAACAGTGCAGtTAG....................................... 32207_1_0_0_0_0_2 MATURE 3 0.34 1 0.24 2 0.43 18T3
......AAGTGCTAACAGTGCAGGTAGa...................................... 25782_2_0_0_0_0_1 MATURE 3 0.34 2 0.47 1 0.22 21
....CAAAGTGCTAACAGTGCtGGTA........................................ 40131_1_0_0_0_0_2 MATURE 3 0.34 1 0.24 2 0.43 17T4
....CAAAGTGCTAACAGTGCAGGa......................................... 29155_3_0_0_0_0_0 MATURE 3 0.34 3 0.71 0 0.00 20
....CAAAGTGCTAACAGTGCAGtTAG....................................... 8206_1_0_0_0_0_1 MATURE 2 0.23 1 0.24 1 0.22 19T3
.....AAAGTGCTAACAGTGCgGGTAa....................................... 29741_2_0_0_0_0_0 MATURE 2 0.23 2 0.47 0 0.00 16G4
....CAAAGTGCTAACAGTGCtGGT......................................... 31668_0_0_0_0_0_2 MATURE 2 0.23 0 0.00 2 0.43 17T3
....CAAAGTGCTAACAGTGCAG........................................... 35169_1_0_0_0_0_1 MATURE 2 0.23 1 0.24 1 0.22 19
...TCAAAGTGCTAACAGTGCAGGaAGt...................................... 26712_1_0_0_0_0_1 MATURE 2 0.23 1 0.24 1 0.22 21A2
....CAAAGTGCTAACAGTGaAGGTt........................................ 1723_0_0_0_0_0_2 MATURE 2 0.23 0 0.00 2 0.43 16A4
...TCAAAGTGCTAACAGTGCAGGTAG....................................... 7504_1_0_0_0_0_1 MATURE 2 0.23 1 0.24 1 0.22 24
....CAAAGTGCTAACAGTGCAGt.......................................... 7026_1_0_0_0_0_1 MATURE 2 0.23 1 0.24 1 0.22 19
....CAAAGTGCTAACAGTGCAGcTAt....................................... 39335_1_0_0_0_0_1 MATURE 2 0.23 1 0.24 1 0.22 19C2
...TCAAAGTGCTAACAGTGCAGGTAa....................................... 31060_2_0_0_0_0_0 MATURE 2 0.23 2 0.47 0 0.00 23
......AAGTGCTAACAGTGCAGGTAa....................................... 39403_1_0_0_0_0_1 MATURE 2 0.23 1 0.24 1 0.22 20
....CAAAGTGCTAACAGTGtAGGTt........................................ 37071_0_0_0_0_0_2 MATURE 2 0.23 0 0.00 2 0.43 16T4
....CAAAGTGCTAACAGTGgAGGTt........................................ 34101_1_0_0_0_0_1 MATURE 2 0.23 1 0.24 1 0.22 16G4
.....AAAGTGCTAACAGTGCtGGTAa....................................... 18509_2_0_0_0_0_0 MATURE 2 0.23 2 0.47 0 0.00 16T4
....CAAAGTGCTAACAGTGCAcGTAt....................................... 14747_1_0_0_0_0_1 MATURE 2 0.23 1 0.24 1 0.22 18C3
......AAGTGCTAACAGTGCAGGTAG....................................... 32094_1_0_0_0_0_1 MATURE 2 0.23 1 0.24 1 0.22 21
....CAAAGTGCTAACAGTGCAGcTAG....................................... 24768_0_0_0_0_0_2 MATURE 2 0.23 0 0.00 2 0.43 19C3
....CAAAGTGCTAACAGTGCAtGTAG....................................... 13071_1_0_0_0_0_1 MATURE 2 0.23 1 0.24 1 0.22 18T4
....CAAAGTGCTAACAGTGCAGtTAt....................................... 35450_0_0_0_0_0_2 MATURE 2 0.23 0 0.00 2 0.43 19T2
....CAAAGTGCTAACAGTcCAGGT......................................... 26212_0_0_0_0_0_2 MATURE 2 0.23 0 0.00 2 0.43 15C5
....CAAAGTGCTAACAGTGCAcGT......................................... 3669_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.22 18C2
...TCAAAGTGCTAACAGTaCAGGT......................................... 20395_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.22 16A5
....CAAAGTGCTAACAGTGCAGtTAGt...................................... 37216_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.22 19T3
....CAAAGTGCTAACAGTGCAGcTAc....................................... 5018_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.22 19C2
....CAAAGTGCTAACAGTGCAGcTAGa...................................... 1243_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.22 19C3
....CAAAGTGCTAACAGTGCAcGTAG....................................... 36752_1_0_0_0_0_0 MATURE 1 0.11 1 0.24 0 0.00 18C4
......AAGTGCTAACAGTGCAaGTAG....................................... 40452_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.22 16A4
.....AAAGTGCTAACAGTGCgGGTAt....................................... 34226_1_0_0_0_0_0 MATURE 1 0.11 1 0.24 0 0.00 16G4
....CAAAGTGCTAACAGTGCAcGTAGC...................................... 34845_1_0_0_0_0_0 MATURE 1 0.11 1 0.24 0 0.00 18C5
....CAAAGTGCTAACAGTGCAGaTAGC...................................... 4705_1_0_0_0_0_0 MATURE 1 0.11 1 0.24 0 0.00 19A4
....CAAAGTGCTAACAGTGCAGc.......................................... 455_1_0_0_0_0_0 MATURE 1 0.11 1 0.24 0 0.00 19
.....AAAGTGCTAACAGTGCAGGa......................................... 34164_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.22 19
.....AAAGTGCTAACAGTGCAaGTAGa...................................... 18164_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.22 17A4
.....AAAGTGCTAACAGTGCAGaTAa....................................... 37462_1_0_0_0_0_0 MATURE 1 0.11 1 0.24 0 0.00 18A2
....CAAAGTGCTAACAGTGCAGGc......................................... 32709_1_0_0_0_0_0 MATURE 1 0.11 1 0.24 0 0.00 20
..GTCAAAGTGCTAACAGTGCAGGTAt....................................... 37942_1_0_0_0_0_0 MATURE 1 0.11 1 0.24 0 0.00 24
....CAAAGTGCTAACAGTGCAtGTAGt...................................... 19704_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.22 18T4
.....AAAGTGCTAACAGTGCAGGTAc....................................... 25078_1_0_0_0_0_0 MATURE 1 0.11 1 0.24 0 0.00 21
....CAAAGTGCTAACAGTGCAGGTAGC...................................... 42798_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.22 24
....CAAAGTGCTAACAGTGCAGGaAG....................................... 18423_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.22 20A2
.....AAAGTGCTAACAGTGCgGGTAG....................................... 14196_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.22 16G5
....CAAAGTGCTAACAGTGCAGGTc........................................ 28617_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.22 21
.....AAAGTGCTAACAGTGCtGGTAt....................................... 22385_1_0_0_0_0_0 MATURE 1 0.11 1 0.24 0 0.00 16T4
...TCAAAGTGCTAACAGTGCtGGTt........................................ 2367_1_0_0_0_0_0 MATURE 1 0.11 1 0.24 0 0.00 18T3
..GTCAAAGTGCTAACAGTGCAGaTAt....................................... 32261_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.22 21A2
....CAAAGTGCTAACAGTGCgGGTAc....................................... 1757_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.22 17G4
.....AAAGTGCTAACAGTGCAGaTAGa...................................... 31393_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.22 18A3
....CAAgGTGCTAACAGTGCAGGTt........................................ 24690_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.22 3G17
.....AAAGTGCTAACAGTGCAaGTAGt...................................... 37527_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.22 17A4
......AAGTGCTAACAGTGCAaGTAGt...................................... 28842_1_0_0_0_0_0 MATURE 1 0.11 1 0.24 0 0.00 16A4
...TCAAAGTGCTAACAGTGCAGGT......................................... 39728_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.22 22
..GTCAAAGTGCTAACAGTGCAGGTA........................................ 23783_1_0_0_0_0_0 MATURE 1 0.11 1 0.24 0 0.00 24
....CAAAGTGCTAACAGTGCAaGTAGa...................................... 15422_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.22 18A4
....CAAAGTGCTAACAGTGCAGGTcGCa..................................... 34368_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.22 21C2
.....AAAGTGCTAACAGTGgAGGTA........................................ 28894_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.22 15G5
.....AAAGTGCTAACAGTGCAGcTAG....................................... 30504_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.22 18C3
....CAAAGTGCTAACAGTGaAGGT......................................... 12501_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.22 16A4
.....AAAGTGCTAACAGTGCAGtTAa....................................... 15586_1_0_0_0_0_0 MATURE 1 0.11 1 0.24 0 0.00 18T2
....CAAAGTGCTAACAGTGCAGGTAGt...................................... 3597_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.22 23
---------- ---------- ----------
887 423 464
(47.69) (52.31)
*** OTHER ***
_________________________________________________________________
ATGTCAAAGTGCTAACAGTGCAGGTAGCTTTTTGAGTTCTACTGCAGTGCCAGCACTTCTTACAT REF X 50095680 - 50095744
CAAAGTGCTAACAGTGCAGGTAG MATURE X 50095685 - 50095771 mmu-miR-106a -
_________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
........................................ACTGCAGTGCCAGCACTTCTTAC... 18086_1_0_0_0_0_1 OTHER 2 25.00 1 33.33 1 20.00 23
........................................ACTGCAGTGCCAGCACTTCTTAt... 41408_2_0_0_0_0_0 OTHER 2 25.00 2 66.67 0 0.00 22
........................................ACTGCAGTGCCAGCACTTCTTACt.. 34824_0_0_0_0_0_1 OTHER 1 12.50 0 0.00 1 20.00 23
........................................ACTGCAGTGCCAGCACTTCTTACA.. 11848_0_0_0_0_0_1 OTHER 1 12.50 0 0.00 1 20.00 24
........................................ACTGCAGTGCCAGCACTTCTTACAc. 26768_0_0_0_0_0_1 OTHER 1 12.50 0 0.00 1 20.00 24
...........................CTTTTTGAGTTCTACTGCAGTGCC............... 6124_0_0_0_0_0_1 OTHER 1 12.50 0 0.00 1 20.00 24
---------- ---------- ----------
8 3 5
(37.50) (62.50)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 423 464 887 99.11%
OTHER 3 5 8 0.89%
---------- ---------- ----------
426 469 895
[END]