[BEGIN]

REFERENCE HAIRPIN
***********************************************************************************************************
ID                 : mmu-mir-103-2
DESCRIPTION        : mmu-mir-103-2 MI0000588 Mus musculus miR-103-2 stem-loop
CHROMOSOME         : 2
SPAN               : 131113788 - 131113873
LENGTH             : 86
SEQUENCE           : GTCTTCGTGCTTTCAGCTTCTTTACAGTGCTGCCTTGTAGCATTCAGGTCAAGCAGCATTGTACAGGGCTATGAAAGAACCAAGAA
OVERHANG THRESHOLD : 40%
***********************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-103
ACCID      : MI0000588
PARENT     : mmu-mir-103-2
CHROMOSOME : 2
START      : 131113788
STOP       : 131113873
OFFSET     : 52..74
SEQUENCE   : AGCAGCATTGTACAGGGCTATGA
STRAND     : +
******************************



*** MATURE ***
______________________________________________________________________________________
GTCTTCGTGCTTTCAGCTTCTTTACAGTGCTGCCTTGTAGCATTCAGGTCAAGCAGCATTGTACAGGGCTATGAAAGAACCAAGAA REF                  2                    131113788 - 131113873 
                                                   AGCAGCATTGTACAGGGCTATGA             MATURE               2                    131113840 - 131113947 mmu-miR-103          +                    
______________________________________________________________________________________

                                                                                  -SEQ-                  -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...................................................AGCAGCATTGTACAGGGCTATGA.............   33469_154_0_0_0_0_531       MATURE          685        32.53          154        24.44          531        35.98                        23   
...................................................AGCAGCATTGTACAGGGCTATGt.............   40240_120_0_0_0_0_209       MATURE          329        15.62          120        19.05          209        14.16                        22   
...................................................AGCAGCATTGTACAGGGaTATGA.............    43552_35_0_0_0_0_107       MATURE          142         6.74           35         5.56          107         7.25                      17A5   
...................................................AGCAGCATTGTACAGGGCTATGAt............     43614_53_0_0_0_0_48       MATURE          101         4.80           53         8.41           48         3.25                        23   
....................................................GCAGCATTGTACAGGGCTATGA.............     42267_22_0_0_0_0_71       MATURE           93         4.42           22         3.49           71         4.81                        22   
...................................................AGCAGCATTGTACAGGGCTATGc.............     38411_23_0_0_0_0_54       MATURE           77         3.66           23         3.65           54         3.66                        22   
..................................................AAGCAGCATTGTACAGGGCTATGA.............     30193_28_0_0_0_0_26       MATURE           54         2.56           28         4.44           26         1.76                        24   
...................................................AGCAGCATTGTACAGGGgTATGA.............     38851_17_0_0_0_0_36       MATURE           53         2.52           17         2.70           36         2.44                      17G5   
...................................................AGCAGCATTGTACAGGGCaATGA.............      39157_7_0_0_0_0_44       MATURE           51         2.42            7         1.11           44         2.98                      18A4   
...................................................AGCAGCATTGTACAGGGtTATGA.............     39301_14_0_0_0_0_37       MATURE           51         2.42           14         2.22           37         2.51                      17T5   
...................................................AGCAGCATTGTACAGGGCTATGAA............      10831_9_0_0_0_0_35       MATURE           44         2.09            9         1.43           35         2.37                        24   
...................................................AGCAGCATTGTACAGGGCcATGA.............     36038_14_0_0_0_0_26       MATURE           40         1.90           14         2.22           26         1.76                      18C4   
...................................................AGCAGCATTGTACAGGaCTATG..............     43835_10_0_0_0_0_14       MATURE           24         1.14           10         1.59           14         0.95                      16A5   
....................................................GCAGCATTGTACAGGGCTATGt.............      42175_7_0_0_0_0_17       MATURE           24         1.14            7         1.11           17         1.15                        21   
...................................................AGCAGCATTGTACAGGGCTATG..............      38068_7_0_0_0_0_16       MATURE           23         1.09            7         1.11           16         1.08                        22   
...................................................AGCAGCATTGTACAGGGCTATGAc............      13999_14_0_0_0_0_6       MATURE           20         0.95           14         2.22            6         0.41                        23   
.....................................................CAGCATTGTACAGGGCTATGt.............      43173_3_0_0_0_0_16       MATURE           19         0.90            3         0.48           16         1.08                        20   
....................................................GCAGCATTGTACAGGGCaATGA.............      43231_2_0_0_0_0_13       MATURE           15         0.71            2         0.32           13         0.88                      17A4   
.....................................................CAGCATTGTACAGGGCTATGA.............      36058_1_0_0_0_0_14       MATURE           15         0.71            1         0.16           14         0.95                        21   
...................................................AGCAGCATTGTACAGGGCTATGAAA...........       30107_7_0_0_0_0_6       MATURE           13         0.62            7         1.11            6         0.41                        25   
....................................................GCAGCATTGTACAGGGaTATGA.............       33624_4_0_0_0_0_7       MATURE           11         0.52            4         0.63            7         0.47                      16A5   
....................................................GCAGCATTGTACAGGGCcATGA.............       33291_2_0_0_0_0_8       MATURE           10         0.47            2         0.32            8         0.54                      17C4   
..................................................AAGCAGCATTGTACAGGGCTATGAA............       23450_4_0_0_0_0_6       MATURE           10         0.47            4         0.63            6         0.41                        25   
..................................................AAGCAGCATTGTACAGGGCTATGt.............       38322_7_0_0_0_0_3       MATURE           10         0.47            7         1.11            3         0.20                        23   
..................................................AAGCAGCATTGTACAGGGaTATGA.............       37498_7_0_0_0_0_3       MATURE           10         0.47            7         1.11            3         0.20                      18A5   
...................................................AGCAGCATTGTACAGGGCTATGAg............       34783_3_0_0_0_0_6       MATURE            9         0.43            3         0.48            6         0.41                        23   
....................................................GCAGCATTGTACAGGGCTATGc.............       37581_0_0_0_0_0_8       MATURE            8         0.38            0         0.00            8         0.54                        21   
.....................................................CAGCATTGTACAGGGaTATGA.............       38710_1_0_0_0_0_6       MATURE            7         0.33            1         0.16            6         0.41                      15A5   
.................................................CAAGCAGCATTGTACAGGGCTATGA.............       21930_4_0_0_0_0_3       MATURE            7         0.33            4         0.63            3         0.20                        25   
...................................................AGCAGCATTGTACAGGGCTATGAAc...........       43018_4_0_0_0_0_3       MATURE            7         0.33            4         0.63            3         0.20                        24   
...................................................AGCAGCATTGTACAGGGCTATGAAt...........        7996_3_0_0_0_0_3       MATURE            6         0.28            3         0.48            3         0.20                        24   
..................................................AAGCAGCATTGTACAGGGCTATG..............       32926_1_0_0_0_0_5       MATURE            6         0.28            1         0.16            5         0.34                        23   
....................................................GCAGCATTGTACAGGGCTATGAA............       31143_2_0_0_0_0_4       MATURE            6         0.28            2         0.32            4         0.27                        23   
..................................................AAGCAGCATTGTACAGGGCTATGAt............       32178_1_0_0_0_0_5       MATURE            6         0.28            1         0.16            5         0.34                        24   
......................................................AGCATTGTACAGGGCTATGA.............       36198_1_0_0_0_0_5       MATURE            6         0.28            1         0.16            5         0.34                        20   
...................................................AGCAGCATTGTACAGGGCTATGg.............       43415_2_0_0_0_0_4       MATURE            6         0.28            2         0.32            4         0.27                        22   
..................................................AAGCAGCATTGTACAGGGCaATGA.............       10212_2_0_0_0_0_3       MATURE            5         0.24            2         0.32            3         0.20                      19A4   
....................................................GCAGCATTGTACAGGGCTATGAc............       33592_1_0_0_0_0_4       MATURE            5         0.24            1         0.16            4         0.27                        22   
...................................................AGCAGCATTGTACAGGGCgATGAA............       23204_1_0_0_0_0_3       MATURE            4         0.19            1         0.16            3         0.20                      18G5   
...................................................AGCAGCATTGTACAGGGaTATG..............        7880_1_0_0_0_0_3       MATURE            4         0.19            1         0.16            3         0.20                      17A4   
......................................................AGCATTGTACAGGGCTATGt.............       24675_0_0_0_0_0_4       MATURE            4         0.19            0         0.00            4         0.27                        19   
....................................................GCAGCATTGTACAGGGCTATGAt............       18233_2_0_0_0_0_2       MATURE            4         0.19            2         0.32            2         0.14                        22   
..................................................AAGCAGCATTGTACAGGGgTATGA.............       42758_2_0_0_0_0_2       MATURE            4         0.19            2         0.32            2         0.14                      18G5   
....................................................GCAGCATTGTACAGGGgTATGA.............       35938_1_0_0_0_0_2       MATURE            3         0.14            1         0.16            2         0.14                      16G5   
..................................................AAGCAGCATTGTACAGGGtTATGA.............       30185_2_0_0_0_0_1       MATURE            3         0.14            2         0.32            1         0.07                      18T5   
...................................................AGCAGCATTGTACAGGGgTATG..............        2237_1_0_0_0_0_2       MATURE            3         0.14            1         0.16            2         0.14                      17G4   
..................................................AAGCAGCATTGTACAGGGCcATGA.............       16384_2_0_0_0_0_1       MATURE            3         0.14            2         0.32            1         0.07                      19C4   
.................................................CAgGCAGCATTGTACAGGGCTATGA.............       19444_1_0_0_0_0_2       MATURE            3         0.14            1         0.16            2         0.14                      2G22   
...................................................AGCAGCATTGTACAGGGtTATG..............       31735_1_0_0_0_0_2       MATURE            3         0.14            1         0.16            2         0.14                      17T4   
...................................................AGCAGCATTGTACAGGGCgATGA.............       13654_2_0_0_0_0_0       MATURE            2         0.09            2         0.32            0         0.00                      18G4   
...................................................AGCAGCATTGTACAGGGCaATGAA............       12663_0_0_0_0_0_2       MATURE            2         0.09            0         0.00            2         0.14                      18A5   
.....................................................CAGCATTGTACAGGGCTATGc.............       34463_0_0_0_0_0_2       MATURE            2         0.09            0         0.00            2         0.14                        20   
.................................................CAAGCAGCATTGTACAGGGCcATGA.............       31815_0_0_0_0_0_2       MATURE            2         0.09            0         0.00            2         0.14                      20C4   
....................................................GCAGCATTGTACAGGGCTATG..............       14494_1_0_0_0_0_1       MATURE            2         0.09            1         0.16            1         0.07                        21   
.......................................................GCATTGTACAGGGCTATGA.............       34127_0_0_0_0_0_2       MATURE            2         0.09            0         0.00            2         0.14                        19   
...................................................AGCAGCATTGTACAaGGCTATGA.............       29984_0_0_0_0_0_2       MATURE            2         0.09            0         0.00            2         0.14                      14A8   
....................................................GCAGCATTGTACAGGGtTATGA.............       24530_1_0_0_0_0_1       MATURE            2         0.09            1         0.16            1         0.07                      16T5   
...................................................AGCAGCATTGTACAGGcCTATG..............       32497_0_0_0_0_0_1       MATURE            1         0.05            0         0.00            1         0.07                      16C5   
....................................................GCAaCATTGTACAGGGCTATGA.............       23006_1_0_0_0_0_0       MATURE            1         0.05            1         0.16            0         0.00                      3A18   
.................................................CAgGCAGCATTGTACAGGGCTATG..............       41182_0_0_0_0_0_1       MATURE            1         0.05            0         0.00            1         0.07                      2G21   
...................................................AGCAGCATTGTACAGGGCTcTGAA............        2319_0_0_0_0_0_1       MATURE            1         0.05            0         0.00            1         0.07                      19C4   
....................................................GCgGCATTGTACAGGGCTATG..............       38325_1_0_0_0_0_0       MATURE            1         0.05            1         0.16            0         0.00                      2G18   
...................................................AGCAGCATTGTACAGGGCTAcGAAA...........       28402_0_0_0_0_0_1       MATURE            1         0.05            0         0.00            1         0.07                      20C4   
..................................................AAGCAGCATTGaACAGGGCTATGA.............       39089_0_0_0_0_0_1       MATURE            1         0.05            0         0.00            1         0.07                     11A12   
....................................................GCAGCATTGTACAGGGCaATGAA............       30933_1_0_0_0_0_0       MATURE            1         0.05            1         0.16            0         0.00                      17A5   
...................................................AGCAGCATTGTACAGGGCcATGAA............       39427_1_0_0_0_0_0       MATURE            1         0.05            1         0.16            0         0.00                      18C5   
...................................................AGCAGCATTGTACAGGGCTATGgAA...........       43395_0_0_0_0_0_1       MATURE            1         0.05            0         0.00            1         0.07                      22G2   
....................................................GCAGCATTGTACAGGGCTATGAAc...........       27477_0_0_0_0_0_1       MATURE            1         0.05            0         0.00            1         0.07                        23   
....................................................GCAGaATTGTACAGGGCTATGt.............       13985_0_0_0_0_0_1       MATURE            1         0.05            0         0.00            1         0.07                      4A16   
.....................................................CAGCATTGTACAGGGtTATGA.............       39596_0_0_0_0_0_1       MATURE            1         0.05            0         0.00            1         0.07                      15T5   
..................................................AAGCAGCATTGTACAGGGCTATGg.............       32195_1_0_0_0_0_0       MATURE            1         0.05            1         0.16            0         0.00                        23   
..................................................AAaCAGCATTGTACAGGGCTATGA.............       30398_0_0_0_0_0_1       MATURE            1         0.05            0         0.00            1         0.07                      2A21   
..................................................AAGCAGCATTGTACAGGGCTATGc.............       43119_0_0_0_0_0_1       MATURE            1         0.05            0         0.00            1         0.07                        23   
....................................................GCAGCATTGTACAGGGCTATGg.............        2300_0_0_0_0_0_1       MATURE            1         0.05            0         0.00            1         0.07                        21   
...................................................AGCAGCtTTGTACAGGGCTATGAt............        6809_1_0_0_0_0_0       MATURE            1         0.05            1         0.16            0         0.00                      6T16   
....................................................GCAGCATTGTACAGGtCTATG..............           4_0_0_0_0_0_1       MATURE            1         0.05            0         0.00            1         0.07                      15T5   
......................................................AGCATTGTACAGGGCTATGg.............       23981_1_0_0_0_0_0       MATURE            1         0.05            1         0.16            0         0.00                        19   
...................................................AGCAGCATTGgACAGGGCTATGA.............       16619_0_0_0_0_0_1       MATURE            1         0.05            0         0.00            1         0.07                     10G12   
...................................................AGtAGCATTGTACAGGGCTATGc.............        2089_1_0_0_0_0_0       MATURE            1         0.05            1         0.16            0         0.00                      2T19   
...................................................AGCgGCATTGTACAGGGCTATGAA............        1072_1_0_0_0_0_0       MATURE            1         0.05            1         0.16            0         0.00                      3G20   
....................................................GCAGCATTGTACAGGGCTATGAAAa..........       11263_0_0_0_0_0_1       MATURE            1         0.05            0         0.00            1         0.07                        24   
...................................................AGCAGCATTGcACAGGGCTATGA.............       40629_1_0_0_0_0_0       MATURE            1         0.05            1         0.16            0         0.00                     10C12   
.....................................................CAGCATTGTACAGGGgTATGA.............       33589_0_0_0_0_0_1       MATURE            1         0.05            0         0.00            1         0.07                      15G5   
...................................................AGCAGCATTGTACAGGtCTATG..............       40385_1_0_0_0_0_0       MATURE            1         0.05            1         0.16            0         0.00                      16T5   
....................................................GCAGCATTGTACAGGGCcATGAA............        7695_1_0_0_0_0_0       MATURE            1         0.05            1         0.16            0         0.00                      17C5   
.................................................CAAGCAGCATTGTACAGGGCaATGA.............       24604_0_0_0_0_0_1       MATURE            1         0.05            0         0.00            1         0.07                      20A4   
...................................................AGtAGCATTGTACAGGGCTATGAc............       16542_0_0_0_0_0_1       MATURE            1         0.05            0         0.00            1         0.07                      2T20   
....................................................GCAGCtTTGTACAGGGCTATGA.............       28546_0_0_0_0_0_1       MATURE            1         0.05            0         0.00            1         0.07                      5T16   
...................................................AGCcGCATTGTACAGGGCTATGA.............        7410_0_0_0_0_0_1       MATURE            1         0.05            0         0.00            1         0.07                      3C19   
...................................................AGCAGCATTGTACAGGGCTgTGAA............       32152_0_0_0_0_0_1       MATURE            1         0.05            0         0.00            1         0.07                      19G4   
....................................................GCAGCATTGTACAGGaCTATG..............       25849_0_0_0_0_0_1       MATURE            1         0.05            0         0.00            1         0.07                      15A5   
..................................................AAGCAGCATTGTACAGGGCaATGAA............       10574_0_0_0_0_0_1       MATURE            1         0.05            0         0.00            1         0.07                      19A5   
.................................................CAAaCAGCATTGTACAGGGCTATGA.............       14322_1_0_0_0_0_0       MATURE            1         0.05            1         0.16            0         0.00                      3A21   
...................................................AGCAGCATTGTACAGaGCTATGt.............        4024_1_0_0_0_0_0       MATURE            1         0.05            1         0.16            0         0.00                      15A6   
...................................................AGCAGCAcTGTACAGGGCTATG..............        7446_1_0_0_0_0_0       MATURE            1         0.05            1         0.16            0         0.00                      7C14   
...................................................AGCAaCATTGTACAGGGCTATG..............       24062_1_0_0_0_0_0       MATURE            1         0.05            1         0.16            0         0.00                      4A17   
...................................................AGCAGCATTGgACAGGGCTATGt.............       29926_0_0_0_0_0_1       MATURE            1         0.05            0         0.00            1         0.07                     10G11   
.................................................CAAGCAGCATTGTACAGGGtTATGA.............       10946_0_0_0_0_0_1       MATURE            1         0.05            0         0.00            1         0.07                      19T5   
...................................................AGCAGCgTTGTACAGGGCTATG..............       26940_0_0_0_0_0_1       MATURE            1         0.05            0         0.00            1         0.07                      6G15   
...................................................AGtAGCATTGTACAGGGCTATGA.............        9075_0_0_0_0_0_1       MATURE            1         0.05            0         0.00            1         0.07                      2T20   
...................................................AGCAGgATTGTACAGGGCTATGAt............       35621_0_0_0_0_0_1       MATURE            1         0.05            0         0.00            1         0.07                      5G17   
                                                                                                                               ----------                ----------                ----------   
                                                                                                                                     2106                       630                      1476                                          
                                                                                                                                                            (29.91)                   (70.09)                                       




*** OTHER ***
______________________________________________________________________________________
GTCTTCGTGCTTTCAGCTTCTTTACAGTGCTGCCTTGTAGCATTCAGGTCAAGCAGCATTGTACAGGGCTATGAAAGAACCAAGAA REF                  2                    131113788 - 131113873 
                                                   AGCAGCATTGTACAGGGCTATGA             MATURE               2                    131113840 - 131113947 mmu-miR-103          +                    
______________________________________________________________________________________

                                                                                  -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
..............AGCTTCTTTACAGTGCTGaCTTGT.................................................   14354_2_0_0_0_0_2        OTHER            4        26.67            2        28.57            2        25.00                      18A5   
..............AGCTTCTTTACAGTGCTGtCTTGa.................................................   39022_0_0_0_0_0_2        OTHER            2        13.33            0         0.00            2        25.00                      18T4   
..............AGCTTCTTTACAGTGCTaCCTTa..................................................   30890_0_0_0_0_0_2        OTHER            2        13.33            0         0.00            2        25.00                      17A4   
..............AGCTTCTTTACAGTGCTGCCTcGT.................................................   18286_0_0_0_0_0_1        OTHER            1         6.67            0         0.00            1        12.50                      21C2   
..............AGCTTCTTTACAGTGCTGCCTaGT.................................................   17705_1_0_0_0_0_0        OTHER            1         6.67            1        14.29            0         0.00                      21A2   
..............AGCTTCTTTACAGTGCTGCtTTGT.................................................   34882_0_0_0_0_0_1        OTHER            1         6.67            0         0.00            1        12.50                      19T4   
..............AGCTTCTTTACAGTGCTGCCTT...................................................    9136_1_0_0_0_0_0        OTHER            1         6.67            1        14.29            0         0.00                        22   
..............AGCTTCTTTACAGTGCTGCtTTGc.................................................   17987_1_0_0_0_0_0        OTHER            1         6.67            1        14.29            0         0.00                      19T3   
..............AGCTTCTTTACAGTGCTGCCcTGT.................................................   21241_1_0_0_0_0_0        OTHER            1         6.67            1        14.29            0         0.00                      20C3   
..............AGCTTCTTTACAGTGCTGtCTTGT.................................................   25605_1_0_0_0_0_0        OTHER            1         6.67            1        14.29            0         0.00                      18T5   
                                                                                                                           ----------                ----------                ----------   
                                                                                                                                   15                         7                         8                                          
                                                                                                                                                        (46.67)                   (53.33)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE             630            1476            2106          99.29%
          OTHER               7               8              15           0.71%
                     ----------      ----------      ----------                
                            637            1484            2121                



[END]
