[BEGIN]
REFERENCE HAIRPIN
***********************************************************************************************************
ID : mmu-mir-103-2
DESCRIPTION : mmu-mir-103-2 MI0000588 Mus musculus miR-103-2 stem-loop
CHROMOSOME : 2
SPAN : 131113788 - 131113873
LENGTH : 86
SEQUENCE : GTCTTCGTGCTTTCAGCTTCTTTACAGTGCTGCCTTGTAGCATTCAGGTCAAGCAGCATTGTACAGGGCTATGAAAGAACCAAGAA
OVERHANG THRESHOLD : 40%
***********************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-103
ACCID : MI0000588
PARENT : mmu-mir-103-2
CHROMOSOME : 2
START : 131113788
STOP : 131113873
OFFSET : 52..74
SEQUENCE : AGCAGCATTGTACAGGGCTATGA
STRAND : +
******************************
*** MATURE ***
______________________________________________________________________________________
GTCTTCGTGCTTTCAGCTTCTTTACAGTGCTGCCTTGTAGCATTCAGGTCAAGCAGCATTGTACAGGGCTATGAAAGAACCAAGAA REF 2 131113788 - 131113873
AGCAGCATTGTACAGGGCTATGA MATURE 2 131113840 - 131113947 mmu-miR-103 +
______________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...................................................AGCAGCATTGTACAGGGCTATGA............. 33469_154_0_0_0_0_531 MATURE 685 32.53 154 24.44 531 35.98 23
...................................................AGCAGCATTGTACAGGGCTATGt............. 40240_120_0_0_0_0_209 MATURE 329 15.62 120 19.05 209 14.16 22
...................................................AGCAGCATTGTACAGGGaTATGA............. 43552_35_0_0_0_0_107 MATURE 142 6.74 35 5.56 107 7.25 17A5
...................................................AGCAGCATTGTACAGGGCTATGAt............ 43614_53_0_0_0_0_48 MATURE 101 4.80 53 8.41 48 3.25 23
....................................................GCAGCATTGTACAGGGCTATGA............. 42267_22_0_0_0_0_71 MATURE 93 4.42 22 3.49 71 4.81 22
...................................................AGCAGCATTGTACAGGGCTATGc............. 38411_23_0_0_0_0_54 MATURE 77 3.66 23 3.65 54 3.66 22
..................................................AAGCAGCATTGTACAGGGCTATGA............. 30193_28_0_0_0_0_26 MATURE 54 2.56 28 4.44 26 1.76 24
...................................................AGCAGCATTGTACAGGGgTATGA............. 38851_17_0_0_0_0_36 MATURE 53 2.52 17 2.70 36 2.44 17G5
...................................................AGCAGCATTGTACAGGGCaATGA............. 39157_7_0_0_0_0_44 MATURE 51 2.42 7 1.11 44 2.98 18A4
...................................................AGCAGCATTGTACAGGGtTATGA............. 39301_14_0_0_0_0_37 MATURE 51 2.42 14 2.22 37 2.51 17T5
...................................................AGCAGCATTGTACAGGGCTATGAA............ 10831_9_0_0_0_0_35 MATURE 44 2.09 9 1.43 35 2.37 24
...................................................AGCAGCATTGTACAGGGCcATGA............. 36038_14_0_0_0_0_26 MATURE 40 1.90 14 2.22 26 1.76 18C4
...................................................AGCAGCATTGTACAGGaCTATG.............. 43835_10_0_0_0_0_14 MATURE 24 1.14 10 1.59 14 0.95 16A5
....................................................GCAGCATTGTACAGGGCTATGt............. 42175_7_0_0_0_0_17 MATURE 24 1.14 7 1.11 17 1.15 21
...................................................AGCAGCATTGTACAGGGCTATG.............. 38068_7_0_0_0_0_16 MATURE 23 1.09 7 1.11 16 1.08 22
...................................................AGCAGCATTGTACAGGGCTATGAc............ 13999_14_0_0_0_0_6 MATURE 20 0.95 14 2.22 6 0.41 23
.....................................................CAGCATTGTACAGGGCTATGt............. 43173_3_0_0_0_0_16 MATURE 19 0.90 3 0.48 16 1.08 20
....................................................GCAGCATTGTACAGGGCaATGA............. 43231_2_0_0_0_0_13 MATURE 15 0.71 2 0.32 13 0.88 17A4
.....................................................CAGCATTGTACAGGGCTATGA............. 36058_1_0_0_0_0_14 MATURE 15 0.71 1 0.16 14 0.95 21
...................................................AGCAGCATTGTACAGGGCTATGAAA........... 30107_7_0_0_0_0_6 MATURE 13 0.62 7 1.11 6 0.41 25
....................................................GCAGCATTGTACAGGGaTATGA............. 33624_4_0_0_0_0_7 MATURE 11 0.52 4 0.63 7 0.47 16A5
....................................................GCAGCATTGTACAGGGCcATGA............. 33291_2_0_0_0_0_8 MATURE 10 0.47 2 0.32 8 0.54 17C4
..................................................AAGCAGCATTGTACAGGGCTATGAA............ 23450_4_0_0_0_0_6 MATURE 10 0.47 4 0.63 6 0.41 25
..................................................AAGCAGCATTGTACAGGGCTATGt............. 38322_7_0_0_0_0_3 MATURE 10 0.47 7 1.11 3 0.20 23
..................................................AAGCAGCATTGTACAGGGaTATGA............. 37498_7_0_0_0_0_3 MATURE 10 0.47 7 1.11 3 0.20 18A5
...................................................AGCAGCATTGTACAGGGCTATGAg............ 34783_3_0_0_0_0_6 MATURE 9 0.43 3 0.48 6 0.41 23
....................................................GCAGCATTGTACAGGGCTATGc............. 37581_0_0_0_0_0_8 MATURE 8 0.38 0 0.00 8 0.54 21
.....................................................CAGCATTGTACAGGGaTATGA............. 38710_1_0_0_0_0_6 MATURE 7 0.33 1 0.16 6 0.41 15A5
.................................................CAAGCAGCATTGTACAGGGCTATGA............. 21930_4_0_0_0_0_3 MATURE 7 0.33 4 0.63 3 0.20 25
...................................................AGCAGCATTGTACAGGGCTATGAAc........... 43018_4_0_0_0_0_3 MATURE 7 0.33 4 0.63 3 0.20 24
...................................................AGCAGCATTGTACAGGGCTATGAAt........... 7996_3_0_0_0_0_3 MATURE 6 0.28 3 0.48 3 0.20 24
..................................................AAGCAGCATTGTACAGGGCTATG.............. 32926_1_0_0_0_0_5 MATURE 6 0.28 1 0.16 5 0.34 23
....................................................GCAGCATTGTACAGGGCTATGAA............ 31143_2_0_0_0_0_4 MATURE 6 0.28 2 0.32 4 0.27 23
..................................................AAGCAGCATTGTACAGGGCTATGAt............ 32178_1_0_0_0_0_5 MATURE 6 0.28 1 0.16 5 0.34 24
......................................................AGCATTGTACAGGGCTATGA............. 36198_1_0_0_0_0_5 MATURE 6 0.28 1 0.16 5 0.34 20
...................................................AGCAGCATTGTACAGGGCTATGg............. 43415_2_0_0_0_0_4 MATURE 6 0.28 2 0.32 4 0.27 22
..................................................AAGCAGCATTGTACAGGGCaATGA............. 10212_2_0_0_0_0_3 MATURE 5 0.24 2 0.32 3 0.20 19A4
....................................................GCAGCATTGTACAGGGCTATGAc............ 33592_1_0_0_0_0_4 MATURE 5 0.24 1 0.16 4 0.27 22
...................................................AGCAGCATTGTACAGGGCgATGAA............ 23204_1_0_0_0_0_3 MATURE 4 0.19 1 0.16 3 0.20 18G5
...................................................AGCAGCATTGTACAGGGaTATG.............. 7880_1_0_0_0_0_3 MATURE 4 0.19 1 0.16 3 0.20 17A4
......................................................AGCATTGTACAGGGCTATGt............. 24675_0_0_0_0_0_4 MATURE 4 0.19 0 0.00 4 0.27 19
....................................................GCAGCATTGTACAGGGCTATGAt............ 18233_2_0_0_0_0_2 MATURE 4 0.19 2 0.32 2 0.14 22
..................................................AAGCAGCATTGTACAGGGgTATGA............. 42758_2_0_0_0_0_2 MATURE 4 0.19 2 0.32 2 0.14 18G5
....................................................GCAGCATTGTACAGGGgTATGA............. 35938_1_0_0_0_0_2 MATURE 3 0.14 1 0.16 2 0.14 16G5
..................................................AAGCAGCATTGTACAGGGtTATGA............. 30185_2_0_0_0_0_1 MATURE 3 0.14 2 0.32 1 0.07 18T5
...................................................AGCAGCATTGTACAGGGgTATG.............. 2237_1_0_0_0_0_2 MATURE 3 0.14 1 0.16 2 0.14 17G4
..................................................AAGCAGCATTGTACAGGGCcATGA............. 16384_2_0_0_0_0_1 MATURE 3 0.14 2 0.32 1 0.07 19C4
.................................................CAgGCAGCATTGTACAGGGCTATGA............. 19444_1_0_0_0_0_2 MATURE 3 0.14 1 0.16 2 0.14 2G22
...................................................AGCAGCATTGTACAGGGtTATG.............. 31735_1_0_0_0_0_2 MATURE 3 0.14 1 0.16 2 0.14 17T4
...................................................AGCAGCATTGTACAGGGCgATGA............. 13654_2_0_0_0_0_0 MATURE 2 0.09 2 0.32 0 0.00 18G4
...................................................AGCAGCATTGTACAGGGCaATGAA............ 12663_0_0_0_0_0_2 MATURE 2 0.09 0 0.00 2 0.14 18A5
.....................................................CAGCATTGTACAGGGCTATGc............. 34463_0_0_0_0_0_2 MATURE 2 0.09 0 0.00 2 0.14 20
.................................................CAAGCAGCATTGTACAGGGCcATGA............. 31815_0_0_0_0_0_2 MATURE 2 0.09 0 0.00 2 0.14 20C4
....................................................GCAGCATTGTACAGGGCTATG.............. 14494_1_0_0_0_0_1 MATURE 2 0.09 1 0.16 1 0.07 21
.......................................................GCATTGTACAGGGCTATGA............. 34127_0_0_0_0_0_2 MATURE 2 0.09 0 0.00 2 0.14 19
...................................................AGCAGCATTGTACAaGGCTATGA............. 29984_0_0_0_0_0_2 MATURE 2 0.09 0 0.00 2 0.14 14A8
....................................................GCAGCATTGTACAGGGtTATGA............. 24530_1_0_0_0_0_1 MATURE 2 0.09 1 0.16 1 0.07 16T5
...................................................AGCAGCATTGTACAGGcCTATG.............. 32497_0_0_0_0_0_1 MATURE 1 0.05 0 0.00 1 0.07 16C5
....................................................GCAaCATTGTACAGGGCTATGA............. 23006_1_0_0_0_0_0 MATURE 1 0.05 1 0.16 0 0.00 3A18
.................................................CAgGCAGCATTGTACAGGGCTATG.............. 41182_0_0_0_0_0_1 MATURE 1 0.05 0 0.00 1 0.07 2G21
...................................................AGCAGCATTGTACAGGGCTcTGAA............ 2319_0_0_0_0_0_1 MATURE 1 0.05 0 0.00 1 0.07 19C4
....................................................GCgGCATTGTACAGGGCTATG.............. 38325_1_0_0_0_0_0 MATURE 1 0.05 1 0.16 0 0.00 2G18
...................................................AGCAGCATTGTACAGGGCTAcGAAA........... 28402_0_0_0_0_0_1 MATURE 1 0.05 0 0.00 1 0.07 20C4
..................................................AAGCAGCATTGaACAGGGCTATGA............. 39089_0_0_0_0_0_1 MATURE 1 0.05 0 0.00 1 0.07 11A12
....................................................GCAGCATTGTACAGGGCaATGAA............ 30933_1_0_0_0_0_0 MATURE 1 0.05 1 0.16 0 0.00 17A5
...................................................AGCAGCATTGTACAGGGCcATGAA............ 39427_1_0_0_0_0_0 MATURE 1 0.05 1 0.16 0 0.00 18C5
...................................................AGCAGCATTGTACAGGGCTATGgAA........... 43395_0_0_0_0_0_1 MATURE 1 0.05 0 0.00 1 0.07 22G2
....................................................GCAGCATTGTACAGGGCTATGAAc........... 27477_0_0_0_0_0_1 MATURE 1 0.05 0 0.00 1 0.07 23
....................................................GCAGaATTGTACAGGGCTATGt............. 13985_0_0_0_0_0_1 MATURE 1 0.05 0 0.00 1 0.07 4A16
.....................................................CAGCATTGTACAGGGtTATGA............. 39596_0_0_0_0_0_1 MATURE 1 0.05 0 0.00 1 0.07 15T5
..................................................AAGCAGCATTGTACAGGGCTATGg............. 32195_1_0_0_0_0_0 MATURE 1 0.05 1 0.16 0 0.00 23
..................................................AAaCAGCATTGTACAGGGCTATGA............. 30398_0_0_0_0_0_1 MATURE 1 0.05 0 0.00 1 0.07 2A21
..................................................AAGCAGCATTGTACAGGGCTATGc............. 43119_0_0_0_0_0_1 MATURE 1 0.05 0 0.00 1 0.07 23
....................................................GCAGCATTGTACAGGGCTATGg............. 2300_0_0_0_0_0_1 MATURE 1 0.05 0 0.00 1 0.07 21
...................................................AGCAGCtTTGTACAGGGCTATGAt............ 6809_1_0_0_0_0_0 MATURE 1 0.05 1 0.16 0 0.00 6T16
....................................................GCAGCATTGTACAGGtCTATG.............. 4_0_0_0_0_0_1 MATURE 1 0.05 0 0.00 1 0.07 15T5
......................................................AGCATTGTACAGGGCTATGg............. 23981_1_0_0_0_0_0 MATURE 1 0.05 1 0.16 0 0.00 19
...................................................AGCAGCATTGgACAGGGCTATGA............. 16619_0_0_0_0_0_1 MATURE 1 0.05 0 0.00 1 0.07 10G12
...................................................AGtAGCATTGTACAGGGCTATGc............. 2089_1_0_0_0_0_0 MATURE 1 0.05 1 0.16 0 0.00 2T19
...................................................AGCgGCATTGTACAGGGCTATGAA............ 1072_1_0_0_0_0_0 MATURE 1 0.05 1 0.16 0 0.00 3G20
....................................................GCAGCATTGTACAGGGCTATGAAAa.......... 11263_0_0_0_0_0_1 MATURE 1 0.05 0 0.00 1 0.07 24
...................................................AGCAGCATTGcACAGGGCTATGA............. 40629_1_0_0_0_0_0 MATURE 1 0.05 1 0.16 0 0.00 10C12
.....................................................CAGCATTGTACAGGGgTATGA............. 33589_0_0_0_0_0_1 MATURE 1 0.05 0 0.00 1 0.07 15G5
...................................................AGCAGCATTGTACAGGtCTATG.............. 40385_1_0_0_0_0_0 MATURE 1 0.05 1 0.16 0 0.00 16T5
....................................................GCAGCATTGTACAGGGCcATGAA............ 7695_1_0_0_0_0_0 MATURE 1 0.05 1 0.16 0 0.00 17C5
.................................................CAAGCAGCATTGTACAGGGCaATGA............. 24604_0_0_0_0_0_1 MATURE 1 0.05 0 0.00 1 0.07 20A4
...................................................AGtAGCATTGTACAGGGCTATGAc............ 16542_0_0_0_0_0_1 MATURE 1 0.05 0 0.00 1 0.07 2T20
....................................................GCAGCtTTGTACAGGGCTATGA............. 28546_0_0_0_0_0_1 MATURE 1 0.05 0 0.00 1 0.07 5T16
...................................................AGCcGCATTGTACAGGGCTATGA............. 7410_0_0_0_0_0_1 MATURE 1 0.05 0 0.00 1 0.07 3C19
...................................................AGCAGCATTGTACAGGGCTgTGAA............ 32152_0_0_0_0_0_1 MATURE 1 0.05 0 0.00 1 0.07 19G4
....................................................GCAGCATTGTACAGGaCTATG.............. 25849_0_0_0_0_0_1 MATURE 1 0.05 0 0.00 1 0.07 15A5
..................................................AAGCAGCATTGTACAGGGCaATGAA............ 10574_0_0_0_0_0_1 MATURE 1 0.05 0 0.00 1 0.07 19A5
.................................................CAAaCAGCATTGTACAGGGCTATGA............. 14322_1_0_0_0_0_0 MATURE 1 0.05 1 0.16 0 0.00 3A21
...................................................AGCAGCATTGTACAGaGCTATGt............. 4024_1_0_0_0_0_0 MATURE 1 0.05 1 0.16 0 0.00 15A6
...................................................AGCAGCAcTGTACAGGGCTATG.............. 7446_1_0_0_0_0_0 MATURE 1 0.05 1 0.16 0 0.00 7C14
...................................................AGCAaCATTGTACAGGGCTATG.............. 24062_1_0_0_0_0_0 MATURE 1 0.05 1 0.16 0 0.00 4A17
...................................................AGCAGCATTGgACAGGGCTATGt............. 29926_0_0_0_0_0_1 MATURE 1 0.05 0 0.00 1 0.07 10G11
.................................................CAAGCAGCATTGTACAGGGtTATGA............. 10946_0_0_0_0_0_1 MATURE 1 0.05 0 0.00 1 0.07 19T5
...................................................AGCAGCgTTGTACAGGGCTATG.............. 26940_0_0_0_0_0_1 MATURE 1 0.05 0 0.00 1 0.07 6G15
...................................................AGtAGCATTGTACAGGGCTATGA............. 9075_0_0_0_0_0_1 MATURE 1 0.05 0 0.00 1 0.07 2T20
...................................................AGCAGgATTGTACAGGGCTATGAt............ 35621_0_0_0_0_0_1 MATURE 1 0.05 0 0.00 1 0.07 5G17
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2106 630 1476
(29.91) (70.09)
*** OTHER ***
______________________________________________________________________________________
GTCTTCGTGCTTTCAGCTTCTTTACAGTGCTGCCTTGTAGCATTCAGGTCAAGCAGCATTGTACAGGGCTATGAAAGAACCAAGAA REF 2 131113788 - 131113873
AGCAGCATTGTACAGGGCTATGA MATURE 2 131113840 - 131113947 mmu-miR-103 +
______________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..............AGCTTCTTTACAGTGCTGaCTTGT................................................. 14354_2_0_0_0_0_2 OTHER 4 26.67 2 28.57 2 25.00 18A5
..............AGCTTCTTTACAGTGCTGtCTTGa................................................. 39022_0_0_0_0_0_2 OTHER 2 13.33 0 0.00 2 25.00 18T4
..............AGCTTCTTTACAGTGCTaCCTTa.................................................. 30890_0_0_0_0_0_2 OTHER 2 13.33 0 0.00 2 25.00 17A4
..............AGCTTCTTTACAGTGCTGCCTcGT................................................. 18286_0_0_0_0_0_1 OTHER 1 6.67 0 0.00 1 12.50 21C2
..............AGCTTCTTTACAGTGCTGCCTaGT................................................. 17705_1_0_0_0_0_0 OTHER 1 6.67 1 14.29 0 0.00 21A2
..............AGCTTCTTTACAGTGCTGCtTTGT................................................. 34882_0_0_0_0_0_1 OTHER 1 6.67 0 0.00 1 12.50 19T4
..............AGCTTCTTTACAGTGCTGCCTT................................................... 9136_1_0_0_0_0_0 OTHER 1 6.67 1 14.29 0 0.00 22
..............AGCTTCTTTACAGTGCTGCtTTGc................................................. 17987_1_0_0_0_0_0 OTHER 1 6.67 1 14.29 0 0.00 19T3
..............AGCTTCTTTACAGTGCTGCCcTGT................................................. 21241_1_0_0_0_0_0 OTHER 1 6.67 1 14.29 0 0.00 20C3
..............AGCTTCTTTACAGTGCTGtCTTGT................................................. 25605_1_0_0_0_0_0 OTHER 1 6.67 1 14.29 0 0.00 18T5
---------- ---------- ----------
15 7 8
(46.67) (53.33)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 630 1476 2106 99.29%
OTHER 7 8 15 0.71%
---------- ---------- ----------
637 1484 2121
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