[BEGIN]
REFERENCE HAIRPIN
********************************************************************************************************
ID : mmu-mir-101a
DESCRIPTION : mmu-mir-101a MI0000148 Mus musculus miR-101a stem-loop
CHROMOSOME : 4
SPAN : 101019550 - 101019632
LENGTH : 83
SEQUENCE : AGGCTGCCCTGGCTCAGTTATCACAGTGCTGATGCTGTCCATTCTAAAGGTACAGTACTGTGATAACTGAAGGATGGCAGCCA
OVERHANG THRESHOLD : 40%
********************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-101a
ACCID : MI0000148
PARENT : mmu-mir-101a
CHROMOSOME : 4
START : 101019550
STOP : 101019632
OFFSET : 51..71
SEQUENCE : TACAGTACTGTGATAACTGAA
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-101a*
ACCID : MI0000148
PARENT : mmu-mir-101a
CHROMOSOME : 4
START : 101019550
STOP : 101019632
OFFSET : 14..35
SEQUENCE : TCAGTTATCACAGTGCTGATGC
STRAND : -
******************************
*** MATURE ***
___________________________________________________________________________________
AGGCTGCCCTGGCTCAGTTATCACAGTGCTGATGCTGTCCATTCTAAAGGTACAGTACTGTGATAACTGAAGGATGGCAGCCA REF 4 101019550 - 101019632
TACAGTACTGTGATAACTGAA MATURE 4 101019601 - 101019703 mmu-miR-101a -
TCAGTTATCACAGTGCTGATGC MATURESTAR 4 101019564 - 101019667 mmu-miR-101a* -
___________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
................................................GGTACAGTACTGTGATAACTGAA............. 40058_15_0_0_0_0_19 MATURE 34 12.01 15 15.79 19 10.11 23
.................................................GTACAGTACTGTGATAACTGA.............. 35053_8_0_0_0_0_22 MATURE 30 10.60 8 8.42 22 11.70 21
................................................GGTACAGTACTGTGATAACTGAAt............ 37673_9_0_0_0_0_6 MATURE 15 5.30 9 9.47 6 3.19 23
.................................................GTACAGTACTGTGATAACTGAAt............ 40818_3_0_0_0_0_11 MATURE 14 4.95 3 3.16 11 5.85 22
.................................................GTACAGTACTGTGATAACTGAA............. 38481_5_0_0_0_0_7 MATURE 12 4.24 5 5.26 7 3.72 22
.................................................GTtCAGTACTGTGATAACTGA.............. 35271_5_0_0_0_0_6 MATURE 11 3.89 5 5.26 6 3.19 2T18
.............................................AAcGGTACAGTACTGTGATAACTGA.............. 11413_1_0_0_0_0_9 MATURE 10 3.53 1 1.05 9 4.79 2C22
................................................GGTACAGTACTGTGATAACTGAAa............ 17367_0_0_0_0_0_9 MATURE 9 3.18 0 0.00 9 4.79 23
................................................GGTACAGTACTGTGATAACTGAt............. 33347_3_0_0_0_0_5 MATURE 8 2.83 3 3.16 5 2.66 22
.................................................GTACAGTACTGTGATcACTGA.............. 38872_1_0_0_0_0_6 MATURE 7 2.47 1 1.05 6 3.19 15C5
.................................................GTACAGTACTGTGATAACTGAt............. 19091_4_0_0_0_0_2 MATURE 6 2.12 4 4.21 2 1.06 21
...................................................ACAGTACTGTGATAACTGA.............. 41924_2_0_0_0_0_4 MATURE 6 2.12 2 2.11 4 2.13 19
..................................................TACAGTACTGTGATAACTGA.............. 34670_2_0_0_0_0_3 MATURE 5 1.77 2 2.11 3 1.60 20
................................................GGTACAGTACTGTGATAACTGAg............. 42941_1_0_0_0_0_3 MATURE 4 1.41 1 1.05 3 1.60 22
................................................GGTACAGTACTGTGATAACTGAc............. 29382_2_0_0_0_0_2 MATURE 4 1.41 2 2.11 2 1.06 22
.................................................GTACAGTACTGTGATAACTGAc............. 25559_1_0_0_0_0_3 MATURE 4 1.41 1 1.05 3 1.60 21
.............................................AAgGGTACAGTACTGTGATAACTGA.............. 20161_1_0_0_0_0_3 MATURE 4 1.41 1 1.05 3 1.60 2G22
.................................................GTACAGTACTGTGATtACTGA.............. 32634_0_0_0_0_0_4 MATURE 4 1.41 0 0.00 4 2.13 15T5
..................................................TACAGTACTGTGATAACTGAAt............ 9110_1_0_0_0_0_2 MATURE 3 1.06 1 1.05 2 1.06 21
...................................................ACAGTACTGTGATAACTGAAt............ 40588_3_0_0_0_0_0 MATURE 3 1.06 3 3.16 0 0.00 20
...................................................ACAGTACTGTGATAACTGAA............. 28868_1_0_0_0_0_2 MATURE 3 1.06 1 1.05 2 1.06 20
.............................................AAcGGTACAGTACTGTGATAAC................. 40671_1_0_0_0_0_2 MATURE 3 1.06 1 1.05 2 1.06 2C19
.................................................GTACAGTACTGTGATAACTGt.............. 17094_1_0_0_0_0_2 MATURE 3 1.06 1 1.05 2 1.06 20
.................................................GTACAGTACTGTGATAACTGc.............. 25013_1_0_0_0_0_2 MATURE 3 1.06 1 1.05 2 1.06 20
................................................GGTACAGTACTGTGATAACTaAA............. 27990_0_0_0_0_0_2 MATURE 2 0.71 0 0.00 2 1.06 20A2
.................................................GTACAGTACTGTGATAACgGAAt............ 18667_0_0_0_0_0_2 MATURE 2 0.71 0 0.00 2 1.06 18G3
...............................................AGGTACAGTACTGTGATAACTGAA............. 22380_1_0_0_0_0_1 MATURE 2 0.71 1 1.05 1 0.53 24
................................................GGTACAGTAgTGTGATAACTGAAt............ 26505_0_0_0_0_0_2 MATURE 2 0.71 0 0.00 2 1.06 9G13
.................................................GTACAGTACTGTGATAACaGA.............. 21306_1_0_0_0_0_1 MATURE 2 0.71 1 1.05 1 0.53 18A2
.................................................GTACAGTACTGTGATAACTG............... 40795_1_0_0_0_0_1 MATURE 2 0.71 1 1.05 1 0.53 20
...............................................AGGTACAGTACTGTGATAACTGAAt............ 42015_1_0_0_0_0_1 MATURE 2 0.71 1 1.05 1 0.53 24
................................................GGTACAGTACTGTGATAACTaAAt............ 27434_1_0_0_0_0_1 MATURE 2 0.71 1 1.05 1 0.53 20A2
................................................GGTAaAGTACTGTGATAACTGAA............. 33014_0_0_0_0_0_2 MATURE 2 0.71 0 0.00 2 1.06 4A18
................................................GGTAaAGTACTGTGATAACTGAAa............ 22440_0_0_0_0_0_2 MATURE 2 0.71 0 0.00 2 1.06 4A18
...............................................AGGTACAGTACTGTGATAACaGAAt............ 16439_1_0_0_0_0_1 MATURE 2 0.71 1 1.05 1 0.53 20A3
...............................................AGGTACAGTACTGTGATAACTaAAa............ 32987_0_0_0_0_0_2 MATURE 2 0.71 0 0.00 2 1.06 21A2
.................................................GTAaAGTACTGTGATAACTGAAt............ 27968_0_0_0_0_0_2 MATURE 2 0.71 0 0.00 2 1.06 3A18
...............................................AGGTACAGTACTGTGATAACTcAAt............ 40835_1_0_0_0_0_1 MATURE 2 0.71 1 1.05 1 0.53 21C2
................................................GGTACAGTACTGTGATAACgGAAt............ 21412_0_0_0_0_0_2 MATURE 2 0.71 0 0.00 2 1.06 19G3
................................................GGTACAGTgCTGTGATAACTGA.............. 37809_0_0_0_0_0_2 MATURE 2 0.71 0 0.00 2 1.06 8G13
................................................GGTACAGTACTGTGATAACTtAAa............ 34946_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.53 20T2
...............................................AGGTACAGTACTGTGATAACaGAA............. 16112_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.53 20A3
..............................................AAGGTACAGTACTGTGATAACTG............... 631_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.53 23
..................................................TACAGTACTGTGATAACaGAAt............ 36043_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.53 17A3
................................................GGTACAGTACTGTGATAACTGAAGt........... 27282_1_0_0_0_0_0 MATURE 1 0.35 1 1.05 0 0.00 24
.............................................AAcGGTACAGTACTGTGATAACTGt.............. 39076_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.53 2C21
................................................GGTACAGTACTGTGATAACTcAA............. 43652_1_0_0_0_0_0 MATURE 1 0.35 1 1.05 0 0.00 20C2
.................................................GTACAGTAaTGTGATAACTGA.............. 42862_1_0_0_0_0_0 MATURE 1 0.35 1 1.05 0 0.00 8A12
...............................................AGGTACAGTAgTGTGATAACTGAAt............ 9275_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.53 10G13
.............................................AAAGGTACAGTACTGTGATAACaGA.............. 9841_1_0_0_0_0_0 MATURE 1 0.35 1 1.05 0 0.00 22A2
...................................................ACAGTACTGTGATAACTGAg............. 28667_1_0_0_0_0_0 MATURE 1 0.35 1 1.05 0 0.00 19
..............................................AAtGTACAGTACTGTGATAACTGt.............. 4841_1_0_0_0_0_0 MATURE 1 0.35 1 1.05 0 0.00 2T20
.............................................AAtGGTACAGTACTGTGATAACTGc.............. 960_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.53 2T21
................................................GGTACAGTACTGTGAaAACTGAAc............ 27533_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.53 15A7
................................................GGTACAGTACTGTGATAACTaAAc............ 30796_1_0_0_0_0_0 MATURE 1 0.35 1 1.05 0 0.00 20A2
................................................GGTACAGTACTGTGATAAgTGAAt............ 36246_1_0_0_0_0_0 MATURE 1 0.35 1 1.05 0 0.00 18G4
.................................................GTACAGTAgTGTGATAACTGAAt............ 42910_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.53 8G13
................................................GGTAgAGTACTGTGATAACTGAA............. 13329_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.53 4G18
................................................GGTACAGTACTGTGATAACaGAAa............ 22921_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.53 19A3
................................................GGTACAGTACTGTGAgAACTG............... 5022_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.53 15G5
..................................................TACAGTACTGTGATAACTGc.............. 40798_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.53 19
................................................GGTtCAGTACTGTGATAACTGA.............. 14865_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.53 3T18
.................................................GTACAGTACTGTGATAACaGAA............. 37656_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.53 18A3
...............................................AGGTACAGTACTGTGATAACTaAAt............ 14555_1_0_0_0_0_0 MATURE 1 0.35 1 1.05 0 0.00 21A2
...................................................ACAGTACTGTGATAACTGAAa............ 472_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.53 20
...............................................AGGTACAGTACTGTGATAACgGAAt............ 6837_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.53 20G3
.................................................GTAtAGTACTGTGATAACTGAAt............ 30746_1_0_0_0_0_0 MATURE 1 0.35 1 1.05 0 0.00 3T18
................................................GGTACAGTACTGTGATAAgTGAA............. 20892_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.53 18G4
..............................................AAGGTACAGTACTGTGATAACTGAA............. 15728_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.53 25
.............................................AAAGGTACAGTACTGTGATAACTGA.............. 40430_1_0_0_0_0_0 MATURE 1 0.35 1 1.05 0 0.00 25
...............................................AGGTACAGTACTGTGATAACTGAc............. 17084_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.53 23
.................................................GTAtAGTACTGTGATAACTGAA............. 38285_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.53 3T18
................................................GGTAtAGTACTGTGATAACTGAA............. 42887_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.53 4T18
................................................GGTACAGTACTGTGATAACTGAAc............ 19644_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.53 23
...................................................ACAGTACTGTGATAACTGAAGt........... 17851_1_0_0_0_0_0 MATURE 1 0.35 1 1.05 0 0.00 21
...................................................ACAGTACTGTGATAACTGAAc............ 24452_1_0_0_0_0_0 MATURE 1 0.35 1 1.05 0 0.00 20
....................................................CAGTACTGTGATAACTGAA............. 2824_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.53 19
.............................................AAtGGTACAGTACTGTGATAACTGA.............. 27627_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.53 2T22
..................................................TACAGTACTGTGATAACTtAAa............ 32519_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.53 18T2
................................................GGTAaAGTACTGTGATAACTGAAt............ 17603_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.53 4A18
.................................................GTACAGTACTGTGATAACaGAAG............ 36594_1_0_0_0_0_0 MATURE 1 0.35 1 1.05 0 0.00 18A4
................................................GGTACAGTACTGTGATAACTtAAt............ 33670_1_0_0_0_0_0 MATURE 1 0.35 1 1.05 0 0.00 20T2
..................................................TACAGTACTGTGATAACTGAAa............ 28092_1_0_0_0_0_0 MATURE 1 0.35 1 1.05 0 0.00 21
.....................................................AGTACTGTGATAACTGAAG............ 14900_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.53 19
.................................................GTACcGTACTGTGATAACTGAAt............ 31711_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.53 4C17
................................................GGTACAGTACTGTGATAACcGAAGt........... 25118_1_0_0_0_0_0 MATURE 1 0.35 1 1.05 0 0.00 19C4
---------- ---------- ----------
283 95 188
(33.57) (66.43)
*** MATURESTAR ***
___________________________________________________________________________________
AGGCTGCCCTGGCTCAGTTATCACAGTGCTGATGCTGTCCATTCTAAAGGTACAGTACTGTGATAACTGAAGGATGGCAGCCA REF 4 101019550 - 101019632
TACAGTACTGTGATAACTGAA MATURE 4 101019601 - 101019703 mmu-miR-101a -
TCAGTTATCACAGTGCTGATGC MATURESTAR 4 101019564 - 101019667 mmu-miR-101a* -
___________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.............TCAGTTATCACAGTGCTGATGC................................................. 22769_3_0_0_0_0_6 MATURESTAR 9 34.62 3 30.00 6 37.50 22
..........GGCgCAGTTATCACAGTGCTGATGt................................................. 38344_3_0_0_0_0_0 MATURESTAR 3 11.54 3 30.00 0 0.00 3G20
.............TCAGTTATCACAGTGCTGATGCT................................................ 4260_1_0_0_0_0_2 MATURESTAR 3 11.54 1 10.00 2 12.50 23
..........GGCgCAGTTATCACAGTGCTGAT................................................... 17211_0_0_0_0_0_1 MATURESTAR 1 3.85 0 0.00 1 6.25 3G19
.............TCAGTTATCACAGTGCTaATGCT................................................ 14210_1_0_0_0_0_0 MATURESTAR 1 3.85 1 10.00 0 0.00 17A5
.............TCAGTTATCACAGTGCTcATGCT................................................ 34031_0_0_0_0_0_1 MATURESTAR 1 3.85 0 0.00 1 6.25 17C5
...................ATCACAGTGCTGATGCTGTCCATTt........................................ 771_1_0_0_0_0_0 MATURESTAR 1 3.85 1 10.00 0 0.00 24
.............TCAGTTATCACAGTGCTGATGCa................................................ 3526_0_0_0_0_0_1 MATURESTAR 1 3.85 0 0.00 1 6.25 22
.............TCAGTTATCACAGTGCTGAT................................................... 6304_0_0_0_0_0_1 MATURESTAR 1 3.85 0 0.00 1 6.25 20
.............TCAGTTATCACAGTGCTGATGCTt............................................... 34733_0_0_0_0_0_1 MATURESTAR 1 3.85 0 0.00 1 6.25 23
.............TCAGTTATCACAGTGCaGATGC................................................. 32594_0_0_0_0_0_1 MATURESTAR 1 3.85 0 0.00 1 6.25 16A5
...............AGTTATCACAGTGCTGATGCaGTCC............................................ 4704_0_0_0_0_0_1 MATURESTAR 1 3.85 0 0.00 1 6.25 20A4
...........GCgCAGTTATCACAGTGCTGATGCT................................................ 13832_1_0_0_0_0_0 MATURESTAR 1 3.85 1 10.00 0 0.00 2G22
.............TCAGTTATCACAGTGCTaATGC................................................. 35392_0_0_0_0_0_1 MATURESTAR 1 3.85 0 0.00 1 6.25 17A4
---------- ---------- ----------
26 10 16
(38.46) (61.54)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 95 188 283 91.59%
MATURESTAR 10 16 26 8.41%
---------- ---------- ----------
105 204 309
[END]