[BEGIN]

REFERENCE HAIRPIN
***********************************************************************************************************************************************
ID                 : mmu-mir-1-2-as
DESCRIPTION        : mmu-mir-1-2-as MI0006283 Mus musculus miR-1-2-as stem-loop
CHROMOSOME         : 18
SPAN               : 10785444 - 10785565
LENGTH             : 122
SEQUENCE           : TTCCTTTAGCTTCTTCTTGGCGGACATTACCTACCCAAAATACATACTTCTTTACATTCCATAGCACTGAATGTTCATATGGGTACATAAAGAAGTATGTGCTCTGAGTAGGCACTCCTGCG
OVERHANG THRESHOLD : 40%
***********************************************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-1-2-as
ACCID      : MI0006283
PARENT     : mmu-mir-1-2-as
CHROMOSOME : 18
START      : 10785444
STOP       : 10785565
OFFSET     : 41..61
SEQUENCE   : TACATACTTCTTTACATTCCA
STRAND     : +
******************************



*** MATURE ***
__________________________________________________________________________________________________________________________
TTCCTTTAGCTTCTTCTTGGCGGACATTACCTACCCAAAATACATACTTCTTTACATTCCATAGCACTGAATGTTCATATGGGTACATAAAGAAGTATGTGCTCTGAGTAGGCACTCCTGCG REF                  18                   10785444 - 10785565  
                                        TACATACTTCTTTACATTCCA                                                              MATURE               18                   10785485 - 10785626  mmu-miR-1-2-as       +                    
__________________________________________________________________________________________________________________________

                                                                                                                      -SEQ-                -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.......................................ATACATACTTCTTTACATTCCA..............................................................   43697_7_0_0_0_0_119       MATURE          126        16.45            7         9.46          119        17.20                        22   
.........................................ACATACTTCTTTACATTCCA..............................................................   42597_2_0_0_0_0_100       MATURE          102        13.32            2         2.70          100        14.45                        20   
........................................TACATACTTCTTTACATTCC...............................................................    40273_4_0_0_0_0_74       MATURE           78        10.18            4         5.41           74        10.69                        20   
.......................................ATACATACTTCTTTACAcTCCA..............................................................    41338_4_0_0_0_0_40       MATURE           44         5.74            4         5.41           40         5.78                      17C4   
.........................................ACATACTTCTTTACATTCC...............................................................    43422_5_0_0_0_0_33       MATURE           38         4.96            5         6.76           33         4.77                        19   
......................................AATACATACTTCTTTACATTCCA..............................................................    44277_1_0_0_0_0_37       MATURE           38         4.96            1         1.35           37         5.35                        23   
........................................TACATACTTCTTTACATTCa...............................................................    31778_5_0_0_0_0_29       MATURE           34         4.44            5         6.76           29         4.19                        19   
.......................................ATACATACTTCTTTACATTCC...............................................................    43344_9_0_0_0_0_23       MATURE           32         4.18            9        12.16           23         3.32                        21   
..........................................CATACTTCTTTACATTCCA..............................................................    35049_2_0_0_0_0_18       MATURE           20         2.61            2         2.70           18         2.60                        19   
........................................TACATACTTCTTTACATTCCA..............................................................    40121_0_0_0_0_0_15       MATURE           15         1.96            0         0.00           15         2.17                        21   
.......................................ATACATACTTCTTTACATTCa...............................................................     42373_5_0_0_0_0_9       MATURE           14         1.83            5         6.76            9         1.30                        20   
.......................................ATACATACTTCTTTACATTCCg..............................................................     36855_5_0_0_0_0_9       MATURE           14         1.83            5         6.76            9         1.30                        21   
.......................................ATACATACTTCTTTACATaCCA..............................................................    42323_0_0_0_0_0_13       MATURE           13         1.70            0         0.00           13         1.88                      18A3   
.......................................ATACATACTTCTTTACAaTCCA..............................................................    40696_1_0_0_0_0_10       MATURE           11         1.44            1         1.35           10         1.45                      17A4   
.......................................ATACATACTTCTTTACATcCCA..............................................................    29199_0_0_0_0_0_11       MATURE           11         1.44            0         0.00           11         1.59                      18C3   
.......................................ATACATACTTCTTTACATcCC...............................................................     36988_1_0_0_0_0_8       MATURE            9         1.17            1         1.35            8         1.16                      18C2   
......................................AATACATACTTCTTTACATcCCA..............................................................     41373_0_0_0_0_0_7       MATURE            7         0.91            0         0.00            7         1.01                      19C3   
.......................................ATACATACTTCTTTACtTTCCA..............................................................     37136_1_0_0_0_0_6       MATURE            7         0.91            1         1.35            6         0.87                      16T5   
.......................................ATACATACTTCTTTACAgTCCA..............................................................     18538_2_0_0_0_0_4       MATURE            6         0.78            2         2.70            4         0.58                      17G4   
.......................................ATACATACTTCTTTACgTTCCA..............................................................     23405_0_0_0_0_0_5       MATURE            5         0.65            0         0.00            5         0.72                      16G5   
......................................AATACATACTTCTTTACAaTCCA..............................................................     30232_0_0_0_0_0_5       MATURE            5         0.65            0         0.00            5         0.72                      18A4   
......................................AATACATACTTCTTTACcTTCCA..............................................................     24797_0_0_0_0_0_5       MATURE            5         0.65            0         0.00            5         0.72                      17C5   
........................................TACATACTTCTTTACAcTCCA..............................................................     37212_0_0_0_0_0_5       MATURE            5         0.65            0         0.00            5         0.72                      16C4   
.......................................ATACATACTTCTTTACATTCCAT.............................................................     43500_2_0_0_0_0_2       MATURE            4         0.52            2         2.70            2         0.29                        23   
.......................................ATACATACTTCTTTACAaTCC...............................................................     28064_3_0_0_0_0_1       MATURE            4         0.52            3         4.05            1         0.14                      17A3   
......................................AATACATACTTCTTTACAcTCCA..............................................................     33586_0_0_0_0_0_4       MATURE            4         0.52            0         0.00            4         0.58                      18C4   
.....................................AAATACATACTTCTTTACATTCCA..............................................................     15214_1_0_0_0_0_3       MATURE            4         0.52            1         1.35            3         0.43                        24   
........................................TACcTACTTCTTTACATTCCA..............................................................     43027_0_0_0_0_0_4       MATURE            4         0.52            0         0.00            4         0.58                      3C17   
........................................TACcTACTTCTTTACATTCCAc.............................................................     36565_1_0_0_0_0_2       MATURE            3         0.39            1         1.35            2         0.29                      3C17   
.......................................ATACATACTTCTTTACATaCC...............................................................     12522_2_0_0_0_0_1       MATURE            3         0.39            2         2.70            1         0.14                      18A2   
....................................AAAATACATACTTCTTTACATTCCA..............................................................     40672_0_0_0_0_0_3       MATURE            3         0.39            0         0.00            3         0.43                        25   
.....................................AAAgACATACTTCTTTACATTCCA..............................................................      5628_0_0_0_0_0_3       MATURE            3         0.39            0         0.00            3         0.43                      3G20   
.......................................ATACATACTTCTTTACATTC................................................................     35378_0_0_0_0_0_2       MATURE            2         0.26            0         0.00            2         0.29                        20   
.........................................ACATACTTCTTTACATTCCg..............................................................     23099_0_0_0_0_0_2       MATURE            2         0.26            0         0.00            2         0.29                        19   
.......................................ATACATACTTCTTTACATgCCA..............................................................     43350_0_0_0_0_0_2       MATURE            2         0.26            0         0.00            2         0.29                      18G3   
........................................TACATACTTCTTTACATaCCA..............................................................     43433_0_0_0_0_0_2       MATURE            2         0.26            0         0.00            2         0.29                      17A3   
.......................................ATACATACTTCTTTACATaCCAg.............................................................     31366_0_0_0_0_0_2       MATURE            2         0.26            0         0.00            2         0.29                      18A3   
......................................AATACATACTTCTTTACgTTCCA..............................................................     30007_0_0_0_0_0_2       MATURE            2         0.26            0         0.00            2         0.29                      17G5   
......................................AATACATACTTCTTTACtTTCCA..............................................................     25408_0_0_0_0_0_2       MATURE            2         0.26            0         0.00            2         0.29                      17T5   
........................................TACATACTTCTTTACATTaCA..............................................................     16692_0_0_0_0_0_2       MATURE            2         0.26            0         0.00            2         0.29                      18A2   
.......................................ATACATACTTCTTTACATcCCg..............................................................     35717_0_0_0_0_0_2       MATURE            2         0.26            0         0.00            2         0.29                      18C2   
........................................TAaATACTTCTTTACATTCCA..............................................................     38675_0_0_0_0_0_2       MATURE            2         0.26            0         0.00            2         0.29                      2A18   
........................................TACATACTTCTTTACATTCCATAc...........................................................     33157_0_0_0_0_0_2       MATURE            2         0.26            0         0.00            2         0.29                        23   
.......................................ATACATACTTCTTTACATTaCA..............................................................      5657_0_0_0_0_0_2       MATURE            2         0.26            0         0.00            2         0.29                      19A2   
....................................AAAATACATACTTCTTTACATcCCA..............................................................     18487_1_0_0_0_0_1       MATURE            2         0.26            1         1.35            1         0.14                      21C3   
........................................TACATACTTCTTTACATTCCtTAc...........................................................     22266_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                      20T2   
........................................TAgATACTTCTTTACATTCCATA............................................................     29169_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                      2G20   
....................................AAAATgCATACTTCTTTACATTCCA..............................................................     24555_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                      5G19   
........................................TACcTACTTCTTTACATTCCAT.............................................................     31044_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                      3C18   
.........................................ACATACTTCTTTACATTCCATA............................................................      3707_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                        22   
.......................................ATACATACTTCTTgACATTCCA..............................................................     20384_1_0_0_0_0_0       MATURE            1         0.13            1         1.35            0         0.00                      13G8   
........................................TACATACTTCTTTACATTCt...............................................................     14445_1_0_0_0_0_0       MATURE            1         0.13            1         1.35            0         0.00                        19   
.........................................ACATACTTCTTTACAgTCCAT.............................................................     31726_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                      15G5   
.....................................AAtTACATACTTCTTTACATTCC...............................................................      5760_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                      2T20   
.........................................ACATACTTCTTTACATTCCAa.............................................................     10654_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                        20   
......................................AATACATACTTCTTTACATgCCA..............................................................     21800_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                      19G3   
........................................TACATACTTCTTTACATTCCg..............................................................      9746_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                        20   
.....................................AAATACATACTTCTTTACAaTCCA..............................................................     38500_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                      19A4   
.......................................ATACATACTTCTTTACAcTCC...............................................................     24869_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                      17C3   
.......................................ATACATACTTCcTTACATTCC...............................................................      6141_1_0_0_0_0_0       MATURE            1         0.13            1         1.35            0         0.00                      11C9   
......................................AATACATACTTCTTTgCATTCCA..............................................................     11118_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                      15G7   
....................................AAAgTACATACTTCTTTACATTCC...............................................................      2239_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                      3G20   
.......................................ATACATACTTCTTTACAgTCCg..............................................................      9985_1_0_0_0_0_0       MATURE            1         0.13            1         1.35            0         0.00                      17G3   
....................................AAAgTACATACTTCTTTACATTCCA..............................................................     27760_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                      3G21   
........................................TACATACTTCTTTACAaTCCA..............................................................     32172_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                      16A4   
.......................................ATACATACTTCTTTACAaTCCg..............................................................     25927_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                      17A3   
........................................TAaATACTTCTTTACATTCCAc.............................................................     36474_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                      2A18   
.......................................ATAtATACTTCTTTACATTCCA..............................................................      8332_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                      3T18   
.....................................AAATACATACTTCTTTACATcCCA..............................................................     31620_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                      20C3   
..........................................CATACTTCTTTACATTCCAa.............................................................     16417_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                        19   
........................................TAgATACTTCTTTACATTCCATAa...........................................................     15415_1_0_0_0_0_0       MATURE            1         0.13            1         1.35            0         0.00                      2G20   
.........................................ACATACTTCTTTACATTCtAT.............................................................      1890_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                      18T2   
...................................CAAAgTACATACTTCTTTACATTCC...............................................................     26421_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                      4G20   
.......................................ATACATACTTCTTTACATTCCt..............................................................     35847_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                        21   
......................................AATtCATACTTCTTTACATTCCA..............................................................     26224_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                      3T19   
.........................................ACATACTTCTTTACATcCCATA............................................................     37535_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                      16C5   
.......................................ATACATACTTCTTTACATTCCATAt...........................................................      5068_1_0_0_0_0_0       MATURE            1         0.13            1         1.35            0         0.00                        24   
.......................................ATACATACTcCTTTACATTCC...............................................................     20447_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                      9C11   
.........................................ACATACTTCTTTACATTCCc..............................................................     29592_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                        19   
............................................TACTTCTTTACATTCCATA............................................................     29435_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                        19   
......................................AATACATACTTCTTTACATTCCAT.............................................................     30553_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                        24   
.......................................ATACATACTTCTTTACtTTCCg..............................................................     26653_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                      16T4   
.....................................AAATACATACTTCTTTACcTTCCA..............................................................     38066_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                      18C5   
.........................................ACATACTTCTTTACATTCCATAa...........................................................      3024_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                        22   
........................................TACgTACTTCTTTACATTCCA..............................................................      8173_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                      3G17   
........................................TACATACTTCTTTACAcTCCAa.............................................................     25969_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                      16C4   
.....................................AAATACATACTTCTTTACATTCCt..............................................................     30891_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                        23   
........................................TACATACTTCTTTACtTTCCA..............................................................     40602_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                      15T5   
.......................................ATACgTACTTCTTTACATTCCA..............................................................      3221_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                      4G17   
........................................TACtTACTTCTTTACATTCCATAa...........................................................     26534_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                      3T19   
........................................TACATACTTCTTTACATTCCATAa...........................................................      1948_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                        23   
........................................TACcTACTTCTTTACATTCCAg.............................................................      6462_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                      3C17   
.......................................ATACATACTTCTTTACtTTCC...............................................................     41430_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                      16T4   
....................................AAcATACATACTTCTTTACATTCCA..............................................................      2050_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                      2C22   
.......................................ATACATACTTCTTTACATTCCAc.............................................................      8125_1_0_0_0_0_0       MATURE            1         0.13            1         1.35            0         0.00                        22   
........................................TACATACTTCTTTACgTTCCA..............................................................      3186_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                      15G5   
.......................................ATcCATACTTCTTTACATTCCA..............................................................     11077_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                      2C19   
........................................TACATACTTCTTTACATTCCAa.............................................................     41457_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                        21   
.....................................AAATACATACTTCTTTACATgCCAc.............................................................     29816_1_0_0_0_0_0       MATURE            1         0.13            1         1.35            0         0.00                      20G3   
.......................................ATACATACTTCTTTACATTtCAT.............................................................     23256_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                      19T3   
....................................AAAATACATACTTCTTTACAaTCCA..............................................................      3973_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                      20A4   
........................................TACcTACTTCTTTACATTCCAa.............................................................     20686_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                      3C17   
.......................................ATACATACTTCTTTACATTt................................................................     38549_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                        19   
.......................................ATACATACTTCTTTACATaCCg..............................................................     34306_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                      18A2   
........................................TACATACTTCTTTACATcCCATA............................................................     13990_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                      17C5   
.........................................ACATACTTCTTTACATTCCAc.............................................................     17348_1_0_0_0_0_0       MATURE            1         0.13            1         1.35            0         0.00                        20   
.........................................ACATACTTCTTTACATTCCATc............................................................     14959_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                        21   
.......................................ATACATACTTCTTTACAcTCCAc.............................................................     38823_1_0_0_0_0_0       MATURE            1         0.13            1         1.35            0         0.00                      17C4   
........................................TACATACTTCTTTACATTaCAc.............................................................      7040_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                      18A2   
..........................................CATACTTCTTTACATTCCAg.............................................................     24159_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                        19   
.......................................ATACATACTTCTcTACATTCCA..............................................................      2410_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                      12C9   
.......................................ATACATACTTCTTTACATTCCAaAG...........................................................     41431_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                      22A2   
.......................................ATACATACTTCTTTACATaCCAT.............................................................     14198_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                      18A4   
............................................TACTTCTTTACATTCCATAt...........................................................     30908_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.14                        19   
                                                                                                                                                                 ----------                ----------                ----------   
                                                                                                                                                                        766                        74                       692                                          
                                                                                                                                                                                               (9.66)                   (90.34)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE              74             692             766         100.00%
                     ----------      ----------      ----------                
                             74             692             766                



[END]
