[BEGIN]

REFERENCE HAIRPIN
******************************************************************************************************************
ID                 : mmu-let-7e
DESCRIPTION        : mmu-let-7e MI0000561 Mus musculus let-7e stem-loop
CHROMOSOME         : 17
SPAN               : 17967316 - 17967408
LENGTH             : 93
SEQUENCE           : CGCGCCCCCCGGGCTGAGGTAGGAGGTTGTATAGTTGAGGAAGACACCCGAGGAGATCACTATACGGCCTCCTAGCTTTCCCCAGGCTGCGCC
OVERHANG THRESHOLD : 40%
******************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-let-7e
ACCID      : MI0000561
PARENT     : mmu-let-7e
CHROMOSOME : 17
START      : 17967316
STOP       : 17967408
OFFSET     : 15..36
SEQUENCE   : TGAGGTAGGAGGTTGTATAGTT
STRAND     : +
******************************



*** MATURE ***
_____________________________________________________________________________________________
CGCGCCCCCCGGGCTGAGGTAGGAGGTTGTATAGTTGAGGAAGACACCCGAGGAGATCACTATACGGCCTCCTAGCTTTCCCCAGGCTGCGCC REF                  17                   17967316 - 17967408  
              TGAGGTAGGAGGTTGTATAGTT                                                          MATURE               17                   17967331 - 17967444  mmu-let-7e           +                    
_____________________________________________________________________________________________

                                                                                         -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
..............TGAGGTAGGAGGTTGTATAGTT..........................................................   20797_4_0_0_0_0_6       MATURE           10        11.11            4         9.30            6        12.77                        22   
..............TGAGGTAGGAGGTTGTATAGT...........................................................   18511_4_0_0_0_0_3       MATURE            7         7.78            4         9.30            3         6.38                        21   
..............TGAGGTAGGAGGTTGTAgAGTT..........................................................    8631_1_0_0_0_0_5       MATURE            6         6.67            1         2.33            5        10.64                      17G4   
..............TGAGGTAGGAGGTTGTATAGTTt.........................................................   13270_2_0_0_0_0_4       MATURE            6         6.67            2         4.65            4         8.51                        22   
..............TGAGGTAGGAGGTTGTAcAGTT..........................................................   37917_3_0_0_0_0_2       MATURE            5         5.56            3         6.98            2         4.26                      17C4   
..............TGAGGTAGGAGGTTGTAcAGT...........................................................   19855_2_0_0_0_0_3       MATURE            5         5.56            2         4.65            3         6.38                      17C3   
..............TGAGGTAGGAGGTTGTAcAGTTa.........................................................   22146_2_0_0_0_0_3       MATURE            5         5.56            2         4.65            3         6.38                      17C4   
..............TGAGGTAGGAGGTTGTATAGTTG.........................................................   23776_3_0_0_0_0_1       MATURE            4         4.44            3         6.98            1         2.13                        23   
..............TGAGGTAGGAGGTTGTAaAGTTt.........................................................   38720_2_0_0_0_0_1       MATURE            3         3.33            2         4.65            1         2.13                      17A4   
...............GAGGTAGGAGGTTGTATAGT...........................................................   23977_3_0_0_0_0_0       MATURE            3         3.33            3         6.98            0         0.00                        20   
..............TGAGGTAGGAGGTTGTcTAGT...........................................................   16638_1_0_0_0_0_1       MATURE            2         2.22            1         2.33            1         2.13                      16C4   
..............TGAGGTAGGAGGTTGTATAG............................................................   39908_1_0_0_0_0_1       MATURE            2         2.22            1         2.33            1         2.13                        20   
..............TGAGGTAGcAGGTTGTATAGT...........................................................   28589_2_0_0_0_0_0       MATURE            2         2.22            2         4.65            0         0.00                      8C12   
..............TGAGGTAGGAGGTTGTAgAGTTa.........................................................   41741_0_0_0_0_0_2       MATURE            2         2.22            0         0.00            2         4.26                      17G4   
..............TGAGGTAGGAGGTTGTATAGTTa.........................................................   42435_0_0_0_0_0_2       MATURE            2         2.22            0         0.00            2         4.26                        22   
..............TGAGGTAGGAGGTTGTATAGTTGt........................................................   15488_1_0_0_0_0_1       MATURE            2         2.22            1         2.33            1         2.13                        23   
..............TGAGGTAGcAGGTTGTATAGTT..........................................................   27532_2_0_0_0_0_0       MATURE            2         2.22            2         4.65            0         0.00                      8C13   
..............TGAGGTAGGAGGTTGTAgAGTTG.........................................................   14065_2_0_0_0_0_0       MATURE            2         2.22            2         4.65            0         0.00                      17G5   
..............TGAGGTAGGAGGTTGTAaAGTTG.........................................................   12479_1_0_0_0_0_1       MATURE            2         2.22            1         2.33            1         2.13                      17A5   
..............TGAGGTAGGAGGTTGTcTAGTT..........................................................   32607_1_0_0_0_0_1       MATURE            2         2.22            1         2.33            1         2.13                      16C5   
...............GAGGTAGGAGGTTGTATAaTTGt........................................................   33908_1_0_0_0_0_0       MATURE            1         1.11            1         2.33            0         0.00                      18A3   
..............TGAGGTAGGAGGTTGTAcAGTTt.........................................................   37722_0_0_0_0_0_1       MATURE            1         1.11            0         0.00            1         2.13                      17C4   
..............TGAGGTAGGAGGTTGTATAaTTGt........................................................   41216_0_0_0_0_0_1       MATURE            1         1.11            0         0.00            1         2.13                      19A3   
..............TGAGGTAGGAGGTTGTATcGTTt.........................................................   21863_1_0_0_0_0_0       MATURE            1         1.11            1         2.33            0         0.00                      18C3   
...............GAGGTAGGAGGTTGTATAGTT..........................................................   18810_1_0_0_0_0_0       MATURE            1         1.11            1         2.33            0         0.00                        21   
...............GAGGTAGGAGGTTGTATAaTTa.........................................................    9000_0_0_0_0_0_1       MATURE            1         1.11            0         0.00            1         2.13                      18A2   
..............TGAGGTAGGAGGTTGTcTAGTa..........................................................    5241_1_0_0_0_0_0       MATURE            1         1.11            1         2.33            0         0.00                      16C4   
.................GGTAGtAGGTTGTATAGTTGAGGAA....................................................   27574_0_0_0_0_0_1       MATURE            1         1.11            0         0.00            1         2.13                      5T19   
..............TGAGGTAGGAGGTTGTAgAGT...........................................................    5616_0_0_0_0_0_1       MATURE            1         1.11            0         0.00            1         2.13                      17G3   
..............TGAaGTAGGAGGTTGTATAGTT..........................................................   30348_0_0_0_0_0_1       MATURE            1         1.11            0         0.00            1         2.13                      3A18   
..............TGAGGTAGGAGGTTGTtTAGT...........................................................   23271_1_0_0_0_0_0       MATURE            1         1.11            1         2.33            0         0.00                      16T4   
..............TGAGGTAGGAGGTTGTAaAGTT..........................................................   25255_0_0_0_0_0_1       MATURE            1         1.11            0         0.00            1         2.13                      17A4   
...............GAGGTAGGAGGTTGTATAGTa..........................................................   21814_0_0_0_0_0_1       MATURE            1         1.11            0         0.00            1         2.13                        20   
..............TGAGGTAGGAGGTTGTATAGTTc.........................................................    2191_0_0_0_0_0_1       MATURE            1         1.11            0         0.00            1         2.13                        22   
..............TGAGGTAGGAGGTTGTtTAGTT..........................................................    8571_0_0_0_0_0_1       MATURE            1         1.11            0         0.00            1         2.13                      16T5   
..............TGAGGTAGGAGGTTGTATAa............................................................    7447_1_0_0_0_0_0       MATURE            1         1.11            1         2.33            0         0.00                        19   
                                                                                                                                  ----------                ----------                ----------   
                                                                                                                                          90                        43                        47                                          
                                                                                                                                                               (47.78)                   (52.22)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE              43              47              90         100.00%
                     ----------      ----------      ----------                
                             43              47              90                



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