[BEGIN]
REFERENCE HAIRPIN
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ID : mmu-let-7e
DESCRIPTION : mmu-let-7e MI0000561 Mus musculus let-7e stem-loop
CHROMOSOME : 17
SPAN : 17967316 - 17967408
LENGTH : 93
SEQUENCE : CGCGCCCCCCGGGCTGAGGTAGGAGGTTGTATAGTTGAGGAAGACACCCGAGGAGATCACTATACGGCCTCCTAGCTTTCCCCAGGCTGCGCC
OVERHANG THRESHOLD : 40%
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TARGET
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CATEGORY : MATURE
ID : mmu-let-7e
ACCID : MI0000561
PARENT : mmu-let-7e
CHROMOSOME : 17
START : 17967316
STOP : 17967408
OFFSET : 15..36
SEQUENCE : TGAGGTAGGAGGTTGTATAGTT
STRAND : +
******************************
*** MATURE ***
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CGCGCCCCCCGGGCTGAGGTAGGAGGTTGTATAGTTGAGGAAGACACCCGAGGAGATCACTATACGGCCTCCTAGCTTTCCCCAGGCTGCGCC REF 17 17967316 - 17967408
TGAGGTAGGAGGTTGTATAGTT MATURE 17 17967331 - 17967444 mmu-let-7e +
_____________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..............TGAGGTAGGAGGTTGTATAGTT.......................................................... 20797_4_0_0_0_0_6 MATURE 10 11.11 4 9.30 6 12.77 22
..............TGAGGTAGGAGGTTGTATAGT........................................................... 18511_4_0_0_0_0_3 MATURE 7 7.78 4 9.30 3 6.38 21
..............TGAGGTAGGAGGTTGTAgAGTT.......................................................... 8631_1_0_0_0_0_5 MATURE 6 6.67 1 2.33 5 10.64 17G4
..............TGAGGTAGGAGGTTGTATAGTTt......................................................... 13270_2_0_0_0_0_4 MATURE 6 6.67 2 4.65 4 8.51 22
..............TGAGGTAGGAGGTTGTAcAGTT.......................................................... 37917_3_0_0_0_0_2 MATURE 5 5.56 3 6.98 2 4.26 17C4
..............TGAGGTAGGAGGTTGTAcAGT........................................................... 19855_2_0_0_0_0_3 MATURE 5 5.56 2 4.65 3 6.38 17C3
..............TGAGGTAGGAGGTTGTAcAGTTa......................................................... 22146_2_0_0_0_0_3 MATURE 5 5.56 2 4.65 3 6.38 17C4
..............TGAGGTAGGAGGTTGTATAGTTG......................................................... 23776_3_0_0_0_0_1 MATURE 4 4.44 3 6.98 1 2.13 23
..............TGAGGTAGGAGGTTGTAaAGTTt......................................................... 38720_2_0_0_0_0_1 MATURE 3 3.33 2 4.65 1 2.13 17A4
...............GAGGTAGGAGGTTGTATAGT........................................................... 23977_3_0_0_0_0_0 MATURE 3 3.33 3 6.98 0 0.00 20
..............TGAGGTAGGAGGTTGTcTAGT........................................................... 16638_1_0_0_0_0_1 MATURE 2 2.22 1 2.33 1 2.13 16C4
..............TGAGGTAGGAGGTTGTATAG............................................................ 39908_1_0_0_0_0_1 MATURE 2 2.22 1 2.33 1 2.13 20
..............TGAGGTAGcAGGTTGTATAGT........................................................... 28589_2_0_0_0_0_0 MATURE 2 2.22 2 4.65 0 0.00 8C12
..............TGAGGTAGGAGGTTGTAgAGTTa......................................................... 41741_0_0_0_0_0_2 MATURE 2 2.22 0 0.00 2 4.26 17G4
..............TGAGGTAGGAGGTTGTATAGTTa......................................................... 42435_0_0_0_0_0_2 MATURE 2 2.22 0 0.00 2 4.26 22
..............TGAGGTAGGAGGTTGTATAGTTGt........................................................ 15488_1_0_0_0_0_1 MATURE 2 2.22 1 2.33 1 2.13 23
..............TGAGGTAGcAGGTTGTATAGTT.......................................................... 27532_2_0_0_0_0_0 MATURE 2 2.22 2 4.65 0 0.00 8C13
..............TGAGGTAGGAGGTTGTAgAGTTG......................................................... 14065_2_0_0_0_0_0 MATURE 2 2.22 2 4.65 0 0.00 17G5
..............TGAGGTAGGAGGTTGTAaAGTTG......................................................... 12479_1_0_0_0_0_1 MATURE 2 2.22 1 2.33 1 2.13 17A5
..............TGAGGTAGGAGGTTGTcTAGTT.......................................................... 32607_1_0_0_0_0_1 MATURE 2 2.22 1 2.33 1 2.13 16C5
...............GAGGTAGGAGGTTGTATAaTTGt........................................................ 33908_1_0_0_0_0_0 MATURE 1 1.11 1 2.33 0 0.00 18A3
..............TGAGGTAGGAGGTTGTAcAGTTt......................................................... 37722_0_0_0_0_0_1 MATURE 1 1.11 0 0.00 1 2.13 17C4
..............TGAGGTAGGAGGTTGTATAaTTGt........................................................ 41216_0_0_0_0_0_1 MATURE 1 1.11 0 0.00 1 2.13 19A3
..............TGAGGTAGGAGGTTGTATcGTTt......................................................... 21863_1_0_0_0_0_0 MATURE 1 1.11 1 2.33 0 0.00 18C3
...............GAGGTAGGAGGTTGTATAGTT.......................................................... 18810_1_0_0_0_0_0 MATURE 1 1.11 1 2.33 0 0.00 21
...............GAGGTAGGAGGTTGTATAaTTa......................................................... 9000_0_0_0_0_0_1 MATURE 1 1.11 0 0.00 1 2.13 18A2
..............TGAGGTAGGAGGTTGTcTAGTa.......................................................... 5241_1_0_0_0_0_0 MATURE 1 1.11 1 2.33 0 0.00 16C4
.................GGTAGtAGGTTGTATAGTTGAGGAA.................................................... 27574_0_0_0_0_0_1 MATURE 1 1.11 0 0.00 1 2.13 5T19
..............TGAGGTAGGAGGTTGTAgAGT........................................................... 5616_0_0_0_0_0_1 MATURE 1 1.11 0 0.00 1 2.13 17G3
..............TGAaGTAGGAGGTTGTATAGTT.......................................................... 30348_0_0_0_0_0_1 MATURE 1 1.11 0 0.00 1 2.13 3A18
..............TGAGGTAGGAGGTTGTtTAGT........................................................... 23271_1_0_0_0_0_0 MATURE 1 1.11 1 2.33 0 0.00 16T4
..............TGAGGTAGGAGGTTGTAaAGTT.......................................................... 25255_0_0_0_0_0_1 MATURE 1 1.11 0 0.00 1 2.13 17A4
...............GAGGTAGGAGGTTGTATAGTa.......................................................... 21814_0_0_0_0_0_1 MATURE 1 1.11 0 0.00 1 2.13 20
..............TGAGGTAGGAGGTTGTATAGTTc......................................................... 2191_0_0_0_0_0_1 MATURE 1 1.11 0 0.00 1 2.13 22
..............TGAGGTAGGAGGTTGTtTAGTT.......................................................... 8571_0_0_0_0_0_1 MATURE 1 1.11 0 0.00 1 2.13 16T5
..............TGAGGTAGGAGGTTGTATAa............................................................ 7447_1_0_0_0_0_0 MATURE 1 1.11 1 2.33 0 0.00 19
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90 43 47
(47.78) (52.22)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
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MATURE 43 47 90 100.00%
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43 47 90
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