[BEGIN]
REFERENCE HAIRPIN
*******************************************************************************************************************
ID : mmu-let-7c-1
DESCRIPTION : mmu-let-7c-1 MI0000559 Mus musculus let-7c-1 stem-loop
CHROMOSOME : 16
SPAN : 77599902 - 77599995
LENGTH : 94
SEQUENCE : TGTGTGCATCCGGGTTGAGGTAGTAGGTTGTATGGTTTAGAGTTACACCCTGGGAGTTAACTGTACAACCTTCTAGCTTTCCTTGGAGCACACT
OVERHANG THRESHOLD : 40%
*******************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-let-7c
ACCID : MI0000559
PARENT : mmu-let-7c-1
CHROMOSOME : 16
START : 77599902
STOP : 77599995
OFFSET : 16..37
SEQUENCE : TGAGGTAGTAGGTTGTATGGTT
STRAND : +
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-let-7c-1*
ACCID : MI0000559
PARENT : mmu-let-7c-1
CHROMOSOME : 16
START : 77599902
STOP : 77599995
OFFSET : 61..82
SEQUENCE : CTGTACAACCTTCTAGCTTTCC
STRAND : +
******************************
*** MATURE ***
______________________________________________________________________________________________
TGTGTGCATCCGGGTTGAGGTAGTAGGTTGTATGGTTTAGAGTTACACCCTGGGAGTTAACTGTACAACCTTCTAGCTTTCCTTGGAGCACACT REF 16 77599902 - 77599995
TGAGGTAGTAGGTTGTATGGTT MATURE 16 77599918 - 77600032 mmu-let-7c +
CTGTACAACCTTCTAGCTTTCC MATURESTAR 16 77599963 - 77600077 mmu-let-7c-1* +
______________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...............TGAGGTAGTAGGTTGTATGGTTTAt....................................................... 40315_22_0_0_0_0_18 MATURE 40 24.54 22 26.83 18 22.22 24
...............TGAGGTAGTAGGTTGTATGGTTTA........................................................ 13230_15_0_0_0_0_23 MATURE 38 23.31 15 18.29 23 28.40 24
...............TGAGGTAGTAGGTTGTATGGTTTAa....................................................... 7518_17_0_0_0_0_14 MATURE 31 19.02 17 20.73 14 17.28 24
................GAGGTAGTAGGTTGTATGGTTTA........................................................ 39165_8_0_0_0_0_2 MATURE 10 6.13 8 9.76 2 2.47 23
................GAGGTAGTAGGTTGcATGGTTTA........................................................ 25481_3_0_0_0_0_3 MATURE 6 3.68 3 3.66 3 3.70 14C8
...............TGtGGTAGTAGGTTGTATGGTTTA........................................................ 20538_0_0_0_0_0_6 MATURE 6 3.68 0 0.00 6 7.41 2T21
................GAGGTAGTAGGTTGTATGGTTTAa....................................................... 42129_2_0_0_0_0_2 MATURE 4 2.45 2 2.44 2 2.47 23
...............TGAGGTAGTAGGTTGTATcGTTTA........................................................ 25292_3_0_0_0_0_1 MATURE 4 2.45 3 3.66 1 1.23 18C5
..............TTGAGGTAGTAGGTTGTATGGTTT......................................................... 38957_0_0_0_0_0_3 MATURE 3 1.84 0 0.00 3 3.70 24
..............TTGAGGTAGTAGGTTGTATGGTT.......................................................... 37472_1_0_0_0_0_2 MATURE 3 1.84 1 1.22 2 2.47 23
...............TGAGGTAGTAGGTTGTATGGTTTAG....................................................... 8160_2_0_0_0_0_1 MATURE 3 1.84 2 2.44 1 1.23 25
................GAGGTAGTAGGTTGTATGGTTTAGt...................................................... 20401_1_0_0_0_0_1 MATURE 2 1.23 1 1.22 1 1.23 24
.............GTTGAGGTAGTAGGTTGTATGGTT.......................................................... 44173_1_0_0_0_0_1 MATURE 2 1.23 1 1.22 1 1.23 24
.............GTTGAGGTAGTAGGTTGTAcGGTTT......................................................... 9801_1_0_0_0_0_0 MATURE 1 0.61 1 1.22 0 0.00 19C5
.................AGGTAGTAGGTTGTATGGTTTA........................................................ 38010_1_0_0_0_0_0 MATURE 1 0.61 1 1.22 0 0.00 22
...............TGAGGTAGTAGGTTGTATGGTTTAc....................................................... 2113_1_0_0_0_0_0 MATURE 1 0.61 1 1.22 0 0.00 24
................GAGGTAGTAGGTTGTATGaTTTA........................................................ 5915_1_0_0_0_0_0 MATURE 1 0.61 1 1.22 0 0.00 18A4
...............TGAGGTAGTAGGcTGTATGGTTTAa....................................................... 4148_1_0_0_0_0_0 MATURE 1 0.61 1 1.22 0 0.00 12C11
...............TGAGGTAGTAGaTTGTATGGTTTA........................................................ 30975_0_0_0_0_0_1 MATURE 1 0.61 0 0.00 1 1.23 11A12
.............GTTGAGGTAGTAGGTTGTATGtTT.......................................................... 32866_0_0_0_0_0_1 MATURE 1 0.61 0 0.00 1 1.23 21T2
...............TGAGGTAGTAGGTTGTATGaTTTAG....................................................... 36897_1_0_0_0_0_0 MATURE 1 0.61 1 1.22 0 0.00 19A5
...............TGAGGTAGTAGGTTGTATGGcTTAG....................................................... 26101_0_0_0_0_0_1 MATURE 1 0.61 0 0.00 1 1.23 20C4
...............TGAGGTAGTAGGTTGTATGGaTTAG....................................................... 28076_0_0_0_0_0_1 MATURE 1 0.61 0 0.00 1 1.23 20A4
.................AGGTAGTAGGTTGTATGGTTTAGAc..................................................... 5485_1_0_0_0_0_0 MATURE 1 0.61 1 1.22 0 0.00 24
---------- ---------- ----------
163 82 81
(50.31) (49.69)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 82 81 163 100.00%
---------- ---------- ----------
82 81 163
[END]