[BEGIN]
REFERENCE HAIRPIN
*******************************************************************************************************************
ID : mmu-let-7a-1
DESCRIPTION : mmu-let-7a-1 MI0000556 Mus musculus let-7a-1 stem-loop
CHROMOSOME : 13
SPAN : 48633548 - 48633641
LENGTH : 94
SEQUENCE : TTCACTGTGGGATGAGGTAGTAGGTTGTATAGTTTTAGGGTCACACCCACCACTGGGAGATAACTATACAATCTACTGTCTTTCCTAAGGTGAT
OVERHANG THRESHOLD : 40%
*******************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-let-7a
ACCID : MI0000556
PARENT : mmu-let-7a-1
CHROMOSOME : 13
START : 48633548
STOP : 48633641
OFFSET : 13..34
SEQUENCE : TGAGGTAGTAGGTTGTATAGTT
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-let-7a*
ACCID : MI0000556
PARENT : mmu-let-7a-1
CHROMOSOME : 13
START : 48633548
STOP : 48633641
OFFSET : 64..85
SEQUENCE : CTATACAATCTACTGTCTTTCC
STRAND : -
******************************
*** MATURE ***
______________________________________________________________________________________________
TTCACTGTGGGATGAGGTAGTAGGTTGTATAGTTTTAGGGTCACACCCACCACTGGGAGATAACTATACAATCTACTGTCTTTCCTAAGGTGAT REF 13 48633548 - 48633641
TGAGGTAGTAGGTTGTATAGTT MATURE 13 48633561 - 48633675 mmu-let-7a -
CTATACAATCTACTGTCTTTCC MATURESTAR 13 48633612 - 48633726 mmu-let-7a* -
______________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
............TGAGGTAGTAGGTTGTATAGTTTT........................................................... 33695_51_0_0_0_0_48 MATURE 99 53.23 51 54.84 48 51.61 24
............TGAGGTAGTAGGTTGTgTAGTTTT........................................................... 37014_6_0_0_0_0_6 MATURE 12 6.45 6 6.45 6 6.45 16G7
............TGtGGTAGTAGGTTGTATAGTTTT........................................................... 326_1_0_0_0_0_10 MATURE 11 5.91 1 1.08 10 10.75 2T21
.............GAGGTAGTAGGTTGTATAGTTTT........................................................... 21873_4_0_0_0_0_2 MATURE 6 3.23 4 4.30 2 2.15 23
............TGAGGTAGTAGGTTGTATAGTTTTA.......................................................... 1855_2_0_0_0_0_3 MATURE 5 2.69 2 2.15 3 3.23 25
...........ATGAGGTAGTAGGTTGTATAaTT............................................................. 37219_3_0_0_0_0_2 MATURE 5 2.69 3 3.23 2 2.15 20A2
...........ATGAGGTAGTAGGTTGTATAGTT............................................................. 35218_2_0_0_0_0_2 MATURE 4 2.15 2 2.15 2 2.15 23
............TGAcGTAGTAGGTTGTATAGTTTT........................................................... 5678_1_0_0_0_0_3 MATURE 4 2.15 1 1.08 3 3.23 3C20
............TGAGGTAGTAGGTTGTATAGTTTTt.......................................................... 5597_2_0_0_0_0_1 MATURE 3 1.61 2 2.15 1 1.08 24
.............GAGGTAGTAGGTTGTATAGTTTTAt......................................................... 22424_0_0_0_0_0_3 MATURE 3 1.61 0 0.00 3 3.23 24
..............AGGTAGTAGGTTGTATAGTTTT........................................................... 41073_1_0_0_0_0_1 MATURE 2 1.08 1 1.08 1 1.08 22
...........ATGAGGTAGTAGGTTGTAgAGTTT............................................................ 40942_1_0_0_0_0_1 MATURE 2 1.08 1 1.08 1 1.08 18G5
............TGcGGTAGTAGGTTGTATAGTTTT........................................................... 4375_0_0_0_0_0_2 MATURE 2 1.08 0 0.00 2 2.15 2C21
..........GATGAGGTAGTAGGTTGTATAaTTT............................................................ 19204_2_0_0_0_0_0 MATURE 2 1.08 2 2.15 0 0.00 21A3
..........GATGAGGTAGTAGGTTGTATAGT.............................................................. 36702_1_0_0_0_0_0 MATURE 1 0.54 1 1.08 0 0.00 23
...........ATGAGGTAGTAGGTTGTATAaTTa............................................................ 22163_1_0_0_0_0_0 MATURE 1 0.54 1 1.08 0 0.00 20A2
..........GATGAGGTAGTAGGTTGTATAGa.............................................................. 13467_1_0_0_0_0_0 MATURE 1 0.54 1 1.08 0 0.00 22
...........ATGAGGTAGTAGGTTGTAgAGTTa............................................................ 31209_0_0_0_0_0_1 MATURE 1 0.54 0 0.00 1 1.08 18G4
................GTAGTAGGTTGTATAGTTaTAGGG....................................................... 10826_0_0_0_0_0_1 MATURE 1 0.54 0 0.00 1 1.08 18A5
........GGcATGAGGTAGTAGGTTGTATAGT.............................................................. 1351_1_0_0_0_0_0 MATURE 1 0.54 1 1.08 0 0.00 2C22
.........GGATGAGGTAGTAGGTTGTAaAGT.............................................................. 23886_0_0_0_0_0_1 MATURE 1 0.54 0 0.00 1 1.08 20A3
...........ATGAGGTAGTAGGTTGTAcAGTT............................................................. 5105_0_0_0_0_0_1 MATURE 1 0.54 0 0.00 1 1.08 18C4
............TGAaGTAGTAGGTTGTATAGTTTT........................................................... 37620_0_0_0_0_0_1 MATURE 1 0.54 0 0.00 1 1.08 3A20
...........ATGAGGTAGTAGGTTGTAcAGTTa............................................................ 15992_0_0_0_0_0_1 MATURE 1 0.54 0 0.00 1 1.08 18C4
..........GATGAGGTAGTAGGTTGTAgAGTTT............................................................ 25554_0_0_0_0_0_1 MATURE 1 0.54 0 0.00 1 1.08 19G5
.............GAaGTAGTAGGTTGTATAGTTTT........................................................... 31007_1_0_0_0_0_0 MATURE 1 0.54 1 1.08 0 0.00 2A20
..........GATGAtGTAGTAGGTTGTATAGTTa............................................................ 2599_1_0_0_0_0_0 MATURE 1 0.54 1 1.08 0 0.00 5T18
.........GGATGAGGTAGTAGGTTGTAaAGTT............................................................. 11818_1_0_0_0_0_0 MATURE 1 0.54 1 1.08 0 0.00 20A4
.........GGATGAGGTAGTAGGTTGTcTAGTa............................................................. 17093_1_0_0_0_0_0 MATURE 1 0.54 1 1.08 0 0.00 19C4
...........ATGAGGTAGTAGGTTGTgTAGTT............................................................. 2375_1_0_0_0_0_0 MATURE 1 0.54 1 1.08 0 0.00 17G5
..........GATGAGGTAGTAGGTTGTcTAGTT............................................................. 11956_1_0_0_0_0_0 MATURE 1 0.54 1 1.08 0 0.00 18C5
.........GGATGAGGTAGTAGGTTGTtTAGT.............................................................. 43254_0_0_0_0_0_1 MATURE 1 0.54 0 0.00 1 1.08 19T4
...........ATGAtGTAGTAGGTTGTATAGTTTT........................................................... 18031_1_0_0_0_0_0 MATURE 1 0.54 1 1.08 0 0.00 4T20
.............GAGGTAGTAGGTTGTATAaTTTTA.......................................................... 18424_1_0_0_0_0_0 MATURE 1 0.54 1 1.08 0 0.00 18A5
...........ATGAGGTAGTAGGTTGTATAtTT............................................................. 26701_1_0_0_0_0_0 MATURE 1 0.54 1 1.08 0 0.00 20T2
.............GAGGTAGTAGGTTGTATAGTTTTAa......................................................... 25191_1_0_0_0_0_0 MATURE 1 0.54 1 1.08 0 0.00 24
...........ATGAGGTAGTAGGTTGTAaAGTT............................................................. 21616_1_0_0_0_0_0 MATURE 1 0.54 1 1.08 0 0.00 18A4
............TGAGGTAGTAGGTTGTATAGcTTTA.......................................................... 24834_0_0_0_0_0_1 MATURE 1 0.54 0 0.00 1 1.08 20C4
..........GATGAGGTAGTAGGTTGTAcAGTT............................................................. 41604_1_0_0_0_0_0 MATURE 1 0.54 1 1.08 0 0.00 19C4
...........ATGAGGTAGTAGGTTGTATAGTTa............................................................ 30319_1_0_0_0_0_0 MATURE 1 0.54 1 1.08 0 0.00 23
---------- ---------- ----------
186 93 93
(50.00) (50.00)
*** OTHER ***
______________________________________________________________________________________________
TTCACTGTGGGATGAGGTAGTAGGTTGTATAGTTTTAGGGTCACACCCACCACTGGGAGATAACTATACAATCTACTGTCTTTCCTAAGGTGAT REF 13 48633548 - 48633641
TGAGGTAGTAGGTTGTATAGTT MATURE 13 48633561 - 48633675 mmu-let-7a -
CTATACAATCTACTGTCTTTCC MATURESTAR 13 48633612 - 48633726 mmu-let-7a* -
______________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
......................................GGTCACACCCACCACTGGGAGATAA................................ 1498_0_0_0_0_0_3 OTHER 3 60.00 0 0.00 3 75.00 25
......................................GGTCACACCCACCACTGGGAaATAA................................ 4908_1_0_0_0_0_0 OTHER 1 20.00 1 100.00 0 0.00 20A4
................................................ACCACTGGGAGATAACTATACAATC...................... 1888_0_0_0_0_0_1 OTHER 1 20.00 0 0.00 1 25.00 25
---------- ---------- ----------
5 1 4
(20.00) (80.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 93 93 186 97.38%
OTHER 1 4 5 2.62%
---------- ---------- ----------
94 97 191
[END]