[BEGIN]

REFERENCE HAIRPIN
******************************************************************************************
ID                 : CLUSTER-593 (mmu-mir-3965)
DESCRIPTION        : CLUSTER-593
CHROMOSOME         : 5
SPAN               : 134802324 - 134802392
LENGTH             : 69
SEQUENCE           : GGGAAGTCAGAGAGCTGCAGCTGAGTGCACAGAAGGCTGCTGCTTATCAGCCTGATGTTCAAGGCTTGC
OVERHANG THRESHOLD : 40%
******************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : CLUSTER-593
ACCID      : ACC1234
PARENT     : CLUSTER-593
CHROMOSOME : 5
START      : 134802324
STOP       : 134802392
OFFSET     : 41..59
SEQUENCE   : TGCTTATCAGCCTGATGTT
STRAND     : +
******************************



*** MATURE ***
_____________________________________________________________________
GGGAAGTCAGAGAGCTGCAGCTGAGTGCACAGAAGGCTGCTGCTTATCAGCCTGATGTTCAAGGCTTGC REF                  5                    134802324 - 134802392
                                        TGCTTATCAGCCTGATGTT           MATURE               5                    134802365 - 134802451 CLUSTER-593          +
_____________________________________________________________________

                                                                 -SEQ-                                          -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-
 ........................................aGCTTATCAGCCTGATGTTga........   301072_AGCTTATCAGCCTGATGTTGA_52_46_24_7_20_10       MATURE          159        43.32          122        47.47           37        33.64           ga           18
 ........................................aGCTTATCAGCCTGATGTTg.........     68898_AGCTTATCAGCCTGATGTTG_23_30_16_5_21_12       MATURE          107        29.16           69        26.85           38        34.55            g           18
 ........................................cGCTTATCAGCCTGATGTTg.........        328022_CGCTTATCAGCCTGATGTTG_12_4_0_0_4_1       MATURE           21         5.72           16         6.23            5         4.55            g           18
 ........................................cGCTTATCAGCCTGATGTTga........         30089_CGCTTATCAGCCTGATGTTGA_4_4_4_0_1_1       MATURE           14         3.81           12         4.67            2         1.82           ga           18
 ........................................aGCTTATCAGCCTGATGTT..........           88456_AGCTTATCAGCCTGATGTT_3_1_2_2_2_0       MATURE           10         2.72            6         2.33            4         3.64                        18
 ........................................cGCTTATCAGCCTGATGTTgac.......       111348_CGCTTATCAGCCTGATGTTGAC_3_0_0_1_2_2       MATURE            8         2.18            3         1.17            5         4.55          gac           18
 ........................................aGCTTATCAGaCTGATGTTCAA.......       329488_AGCTTATCAGACTGATGTTCAA_2_1_0_2_1_1       MATURE            7         1.91            3         1.17            4         3.64                      9A11
 ........................................aGCTTATCAGCCTGATGTTta........         30996_AGCTTATCAGCCTGATGTTTA_3_0_1_1_0_0       MATURE            5         1.36            4         1.56            1         0.91           ta           18
 ........................................aGCTTATCAGCCTGATGTTgt........         61572_AGCTTATCAGCCTGATGTTGT_0_2_2_0_0_0       MATURE            4         1.09            4         1.56            0         0.00           gt           18
 ........................................aGCTTATCAGCCTGATGTTgAA.......        28035_AGCTTATCAGCCTGATGTTGAA_1_0_0_1_1_1       MATURE            4         1.09            1         0.39            3         2.73                      18G2
 ........................................cGCTTATCAGCCTGATGTTta........        116432_CGCTTATCAGCCTGATGTTTA_0_1_0_0_2_0       MATURE            3         0.82            1         0.39            2         1.82           ta           18
 ........................................cGCTTATCAGCCTGATGTTgc........        370826_CGCTTATCAGCCTGATGTTGC_0_0_0_1_1_0       MATURE            2         0.54            0         0.00            2         1.82           gc           18
 ........................................aGCTTATCAGCCTGATGTTgc........         31566_AGCTTATCAGCCTGATGTTGC_0_2_0_0_0_0       MATURE            2         0.54            2         0.78            0         0.00           gc           18
 ........................................aGCTTATCAGCCTGATGTTgAAa......      235187_AGCTTATCAGCCTGATGTTGAAA_1_0_0_0_0_1       MATURE            2         0.54            1         0.39            1         0.91            a         18G2
 ........................................aGCTTATCAGCCTGATGTTtac.......        87165_AGCTTATCAGCCTGATGTTTAC_0_0_0_0_1_1       MATURE            2         0.54            0         0.00            2         1.82          tac           18
 ........................................aGCTTATCAGCCTGATGTTgat.......       399135_AGCTTATCAGCCTGATGTTGAT_1_0_0_0_1_0       MATURE            2         0.54            1         0.39            1         0.91          gat           18
 ........................................aGCTTATCAGCCTGATGTTgtc.......       194846_AGCTTATCAGCCTGATGTTGTC_1_0_1_0_0_0       MATURE            2         0.54            2         0.78            0         0.00          gtc           18
 ........................................aGCTTATCAGCCTGATGTTt.........         134349_AGCTTATCAGCCTGATGTTT_1_0_0_1_0_0       MATURE            2         0.54            1         0.39            1         0.91            t           18
........................................TGCTTATCAGaCTGATGTTC..........         327947_TGCTTATCAGACTGATGTTC_0_1_0_0_0_0       MATURE            1         0.27            1         0.39            0         0.00                      10A9
 ........................................aGCTTATCAGCCTGATGTTC.........          81769_AGCTTATCAGCCTGATGTTC_1_0_0_0_0_0       MATURE            1         0.27            1         0.39            0         0.00                        19
 ........................................aGCTTATCAGCCTGATGTTtg........        406855_AGCTTATCAGCCTGATGTTTG_1_0_0_0_0_0       MATURE            1         0.27            1         0.39            0         0.00           tg           18
 ........................................aGCTTATCAGCCTGATGTTtc........        170566_AGCTTATCAGCCTGATGTTTC_0_0_0_0_1_0       MATURE            1         0.27            0         0.00            1         0.91           tc           18
 ........................................cGCTTATCAGCCTGATGTTCAc.......         3982_CGCTTATCAGCCTGATGTTCAC_0_0_0_1_0_0       MATURE            1         0.27            0         0.00            1         0.91            c           20
 ........................................cGCTTATCAGCCTGATGTTtac.......       196477_CGCTTATCAGCCTGATGTTTAC_1_0_0_0_0_0       MATURE            1         0.27            1         0.39            0         0.00          tac           18
 ........................................cGCTTATCAGCCTGATGTTgAAt......       35811_CGCTTATCAGCCTGATGTTGAAT_1_0_0_0_0_0       MATURE            1         0.27            1         0.39            0         0.00            t         18G2
 ........................................aGCTTATCAGCCTGATGTTCAc.......        63394_AGCTTATCAGCCTGATGTTCAC_0_0_1_0_0_0       MATURE            1         0.27            1         0.39            0         0.00            c           20
 ........................................cGCTTATCAGCCTGATGTTtc........        302657_CGCTTATCAGCCTGATGTTTC_0_0_1_0_0_0       MATURE            1         0.27            1         0.39            0         0.00           tc           18
 ........................................cGCTTATCAGCCTGATGTTa.........          12674_CGCTTATCAGCCTGATGTTA_1_0_0_0_0_0       MATURE            1         0.27            1         0.39            0         0.00            a           18
 ........................................aGCTTATCAGCCTGATGTTtcc.......       254177_AGCTTATCAGCCTGATGTTTCC_0_1_0_0_0_0       MATURE            1         0.27            1         0.39            0         0.00          tcc           18
                                                                                                                                      ----------                ----------                ----------
                                                                                                                                             367                       257                       110
                                                                                                                                                                   (70.03)                   (29.97)




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE             257             110             367         100.00%
                     ----------      ----------      ----------
                            257             110             367



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