[BEGIN]
REFERENCE HAIRPIN
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ID : CLUSTER-593 (mmu-mir-3965)
DESCRIPTION : CLUSTER-593
CHROMOSOME : 5
SPAN : 134802324 - 134802392
LENGTH : 69
SEQUENCE : GGGAAGTCAGAGAGCTGCAGCTGAGTGCACAGAAGGCTGCTGCTTATCAGCCTGATGTTCAAGGCTTGC
OVERHANG THRESHOLD : 40%
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TARGET
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CATEGORY : MATURE
ID : CLUSTER-593
ACCID : ACC1234
PARENT : CLUSTER-593
CHROMOSOME : 5
START : 134802324
STOP : 134802392
OFFSET : 41..59
SEQUENCE : TGCTTATCAGCCTGATGTT
STRAND : +
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*** MATURE ***
_____________________________________________________________________
GGGAAGTCAGAGAGCTGCAGCTGAGTGCACAGAAGGCTGCTGCTTATCAGCCTGATGTTCAAGGCTTGC REF 5 134802324 - 134802392
TGCTTATCAGCCTGATGTT MATURE 5 134802365 - 134802451 CLUSTER-593 +
_____________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
........................................aGCTTATCAGCCTGATGTTga........ 301072_AGCTTATCAGCCTGATGTTGA_52_46_24_7_20_10 MATURE 159 43.32 122 47.47 37 33.64 ga 18
........................................aGCTTATCAGCCTGATGTTg......... 68898_AGCTTATCAGCCTGATGTTG_23_30_16_5_21_12 MATURE 107 29.16 69 26.85 38 34.55 g 18
........................................cGCTTATCAGCCTGATGTTg......... 328022_CGCTTATCAGCCTGATGTTG_12_4_0_0_4_1 MATURE 21 5.72 16 6.23 5 4.55 g 18
........................................cGCTTATCAGCCTGATGTTga........ 30089_CGCTTATCAGCCTGATGTTGA_4_4_4_0_1_1 MATURE 14 3.81 12 4.67 2 1.82 ga 18
........................................aGCTTATCAGCCTGATGTT.......... 88456_AGCTTATCAGCCTGATGTT_3_1_2_2_2_0 MATURE 10 2.72 6 2.33 4 3.64 18
........................................cGCTTATCAGCCTGATGTTgac....... 111348_CGCTTATCAGCCTGATGTTGAC_3_0_0_1_2_2 MATURE 8 2.18 3 1.17 5 4.55 gac 18
........................................aGCTTATCAGaCTGATGTTCAA....... 329488_AGCTTATCAGACTGATGTTCAA_2_1_0_2_1_1 MATURE 7 1.91 3 1.17 4 3.64 9A11
........................................aGCTTATCAGCCTGATGTTta........ 30996_AGCTTATCAGCCTGATGTTTA_3_0_1_1_0_0 MATURE 5 1.36 4 1.56 1 0.91 ta 18
........................................aGCTTATCAGCCTGATGTTgt........ 61572_AGCTTATCAGCCTGATGTTGT_0_2_2_0_0_0 MATURE 4 1.09 4 1.56 0 0.00 gt 18
........................................aGCTTATCAGCCTGATGTTgAA....... 28035_AGCTTATCAGCCTGATGTTGAA_1_0_0_1_1_1 MATURE 4 1.09 1 0.39 3 2.73 18G2
........................................cGCTTATCAGCCTGATGTTta........ 116432_CGCTTATCAGCCTGATGTTTA_0_1_0_0_2_0 MATURE 3 0.82 1 0.39 2 1.82 ta 18
........................................cGCTTATCAGCCTGATGTTgc........ 370826_CGCTTATCAGCCTGATGTTGC_0_0_0_1_1_0 MATURE 2 0.54 0 0.00 2 1.82 gc 18
........................................aGCTTATCAGCCTGATGTTgc........ 31566_AGCTTATCAGCCTGATGTTGC_0_2_0_0_0_0 MATURE 2 0.54 2 0.78 0 0.00 gc 18
........................................aGCTTATCAGCCTGATGTTgAAa...... 235187_AGCTTATCAGCCTGATGTTGAAA_1_0_0_0_0_1 MATURE 2 0.54 1 0.39 1 0.91 a 18G2
........................................aGCTTATCAGCCTGATGTTtac....... 87165_AGCTTATCAGCCTGATGTTTAC_0_0_0_0_1_1 MATURE 2 0.54 0 0.00 2 1.82 tac 18
........................................aGCTTATCAGCCTGATGTTgat....... 399135_AGCTTATCAGCCTGATGTTGAT_1_0_0_0_1_0 MATURE 2 0.54 1 0.39 1 0.91 gat 18
........................................aGCTTATCAGCCTGATGTTgtc....... 194846_AGCTTATCAGCCTGATGTTGTC_1_0_1_0_0_0 MATURE 2 0.54 2 0.78 0 0.00 gtc 18
........................................aGCTTATCAGCCTGATGTTt......... 134349_AGCTTATCAGCCTGATGTTT_1_0_0_1_0_0 MATURE 2 0.54 1 0.39 1 0.91 t 18
........................................TGCTTATCAGaCTGATGTTC.......... 327947_TGCTTATCAGACTGATGTTC_0_1_0_0_0_0 MATURE 1 0.27 1 0.39 0 0.00 10A9
........................................aGCTTATCAGCCTGATGTTC......... 81769_AGCTTATCAGCCTGATGTTC_1_0_0_0_0_0 MATURE 1 0.27 1 0.39 0 0.00 19
........................................aGCTTATCAGCCTGATGTTtg........ 406855_AGCTTATCAGCCTGATGTTTG_1_0_0_0_0_0 MATURE 1 0.27 1 0.39 0 0.00 tg 18
........................................aGCTTATCAGCCTGATGTTtc........ 170566_AGCTTATCAGCCTGATGTTTC_0_0_0_0_1_0 MATURE 1 0.27 0 0.00 1 0.91 tc 18
........................................cGCTTATCAGCCTGATGTTCAc....... 3982_CGCTTATCAGCCTGATGTTCAC_0_0_0_1_0_0 MATURE 1 0.27 0 0.00 1 0.91 c 20
........................................cGCTTATCAGCCTGATGTTtac....... 196477_CGCTTATCAGCCTGATGTTTAC_1_0_0_0_0_0 MATURE 1 0.27 1 0.39 0 0.00 tac 18
........................................cGCTTATCAGCCTGATGTTgAAt...... 35811_CGCTTATCAGCCTGATGTTGAAT_1_0_0_0_0_0 MATURE 1 0.27 1 0.39 0 0.00 t 18G2
........................................aGCTTATCAGCCTGATGTTCAc....... 63394_AGCTTATCAGCCTGATGTTCAC_0_0_1_0_0_0 MATURE 1 0.27 1 0.39 0 0.00 c 20
........................................cGCTTATCAGCCTGATGTTtc........ 302657_CGCTTATCAGCCTGATGTTTC_0_0_1_0_0_0 MATURE 1 0.27 1 0.39 0 0.00 tc 18
........................................cGCTTATCAGCCTGATGTTa......... 12674_CGCTTATCAGCCTGATGTTA_1_0_0_0_0_0 MATURE 1 0.27 1 0.39 0 0.00 a 18
........................................aGCTTATCAGCCTGATGTTtcc....... 254177_AGCTTATCAGCCTGATGTTTCC_0_1_0_0_0_0 MATURE 1 0.27 1 0.39 0 0.00 tcc 18
---------- ---------- ----------
367 257 110
(70.03) (29.97)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 257 110 367 100.00%
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257 110 367
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