[BEGIN]

REFERENCE HAIRPIN
*************************************************************************************
ID                 : CLUSTER-273 (mmu-mir-3962)
DESCRIPTION        : CLUSTER-273
CHROMOSOME         : 1
SPAN               : 196648195 - 196648258
LENGTH             : 64
SEQUENCE           : TGGGTTGAGAAATGTACTCTGCCACGTAGGAGCTAGGTAGTAGTTTGTACATTTCTTACTCCCT
OVERHANG THRESHOLD : 40%
*************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : CLUSTER-273
ACCID      : ACC1234
PARENT     : CLUSTER-273
CHROMOSOME : 1
START      : 196648195
STOP       : 196648258
OFFSET     : 35..55
SEQUENCE   : AGGTAGTAGTTTGTACATTTC
STRAND     : +
******************************



*** MATURE ***
________________________________________________________________
TGGGTTGAGAAATGTACTCTGCCACGTAGGAGCTAGGTAGTAGTTTGTACATTTCTTACTCCCT REF                  1                    196648195 - 196648258
                                  AGGTAGTAGTTTGTACATTTC          MATURE               1                    196648230 - 196648313 CLUSTER-273          +
________________________________________________________________

                                                            -SEQ-                                           -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-
 .................................gAGGTAGTAGTTTGTACATTT..........   384559_GAGGTAGTAGTTTGTACATTT_44_80_103_9_23_29       MATURE          288        53.43          227        54.83           61        48.80                        20
 .................................gAGGTAGTAGTTTGTACATT...........       366000_GAGGTAGTAGTTTGTACATT_8_22_37_7_6_12       MATURE           92        17.07           67        16.18           25        20.00                        19
 .................................gAGGTAGTAGTTTGTACATTTt.........      247974_GAGGTAGTAGTTTGTACATTTT_8_13_23_1_5_4       MATURE           54        10.02           44        10.63           10         8.00            t           20
 .................................gAGGTAGTAGTTTGTACATTTa.........      284491_GAGGTAGTAGTTTGTACATTTA_4_11_14_3_4_1       MATURE           37         6.86           29         7.00            8         6.40            a           20
 .................................gAGGTAGTAGTTTGTACAT............           261678_GAGGTAGTAGTTTGTACAT_7_7_4_1_4_3       MATURE           26         4.82           18         4.35            8         6.40                        18
 .................................gAGGTAGTAGTTTGTACATa...........          134371_GAGGTAGTAGTTTGTACATA_1_0_0_1_2_1       MATURE            5         0.93            1         0.24            4         3.20            a           18
 .................................gAGGTAGTAGTTTGTACATTaa.........         31085_GAGGTAGTAGTTTGTACATTAA_0_2_1_0_1_0       MATURE            4         0.74            3         0.72            1         0.80           aa           19
 .................................gAGGTAGTAGTTTGTACATTTg.........        139040_GAGGTAGTAGTTTGTACATTTG_0_1_2_0_0_1       MATURE            4         0.74            3         0.72            1         0.80            g           20
 .................................gAGGTAGTAGTTTGTACATTTtt........       293039_GAGGTAGTAGTTTGTACATTTTT_0_0_1_1_1_0       MATURE            3         0.56            1         0.24            2         1.60           tt           20
 .................................gAGGTAGTAGTTTGTACATg...........          148346_GAGGTAGTAGTTTGTACATG_1_1_1_0_0_0       MATURE            3         0.56            3         0.72            0         0.00            g           18
 .................................gAGGTAGTAGTTTGTACATTTat........       315555_GAGGTAGTAGTTTGTACATTTAT_0_1_1_0_1_0       MATURE            3         0.56            2         0.48            1         0.80           at           20
 .................................gAGGTAGTAGTTTGTACATTa..........         299016_GAGGTAGTAGTTTGTACATTA_0_0_2_0_0_1       MATURE            3         0.56            2         0.48            1         0.80            a           19
 .................................gAGGTAGTAGTTTGTACATTTaa........       297291_GAGGTAGTAGTTTGTACATTTAA_0_0_2_0_0_0       MATURE            2         0.37            2         0.48            0         0.00           aa           20
 .................................gAGGTAGTAGTTTGTACATTc..........         181016_GAGGTAGTAGTTTGTACATTC_1_0_1_0_0_0       MATURE            2         0.37            2         0.48            0         0.00            c           19
 .................................gAGGTAGTAGTTTGTACATct..........          57938_GAGGTAGTAGTTTGTACATCT_1_1_0_0_0_0       MATURE            2         0.37            2         0.48            0         0.00           ct           18
 .................................gAGGTAGTAGTTTGTACATTat.........        272070_GAGGTAGTAGTTTGTACATTAT_0_0_1_0_0_0       MATURE            1         0.19            1         0.24            0         0.00           at           19
 .................................cAGGTAGTAGTTTGTACATTT..........         128553_CAGGTAGTAGTTTGTACATTT_0_1_0_0_0_0       MATURE            1         0.19            1         0.24            0         0.00                        20
 .................................gAGGTAGTAGTTTGTACATTTC.........         17875_GAGGTAGTAGTTTGTACATTTC_1_0_0_0_0_0       MATURE            1         0.19            1         0.24            0         0.00                        21
....................................GTAGTAGTTTGTACATTTt..........           168140_GTAGTAGTTTGTACATTTT_0_0_0_1_0_0       MATURE            1         0.19            0         0.00            1         0.80            t           18
 .................................gAGGTAGTAGTTTGTACATTTacttt.....    180812_GAGGTAGTAGTTTGTACATTTACTTT_0_0_0_0_0_1       MATURE            1         0.19            0         0.00            1         0.80        acttt           20
.................................TAGGTAGTAGTTTGTACAgta...........         100214_TAGGTAGTAGTTTGTACAGTA_1_0_0_0_0_0       MATURE            1         0.19            1         0.24            0         0.00          gta           18
 .................................gAGGTAGTAGTTTGTACATat..........          45176_GAGGTAGTAGTTTGTACATAT_0_0_0_1_0_0       MATURE            1         0.19            0         0.00            1         0.80           at           18
.................................TAGGTAGTAGTTTGTACAg.............           348423_TAGGTAGTAGTTTGTACAG_1_0_0_0_0_0       MATURE            1         0.19            1         0.24            0         0.00            g           18
 .................................gAGGTAGTAGTTTGTACATgt..........         260294_GAGGTAGTAGTTTGTACATGT_0_0_1_0_0_0       MATURE            1         0.19            1         0.24            0         0.00           gt           18
 .................................gAGGTAGTAGTTTGTACATTct.........        166356_GAGGTAGTAGTTTGTACATTCT_0_0_1_0_0_0       MATURE            1         0.19            1         0.24            0         0.00           ct           19
.................................TAGGTAGTAGTTTGTAC...............             180057_TAGGTAGTAGTTTGTAC_0_1_0_0_0_0       MATURE            1         0.19            1         0.24            0         0.00                        17
                                                                                                                                  ----------                ----------                ----------
                                                                                                                                         539                       414                       125
                                                                                                                                                               (76.81)                   (23.19)




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE             414             125             539         100.00%
                     ----------      ----------      ----------
                            414             125             539



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