[BEGIN]
REFERENCE HAIRPIN
*************************************************************************************
ID : CLUSTER-273 (mmu-mir-3962)
DESCRIPTION : CLUSTER-273
CHROMOSOME : 1
SPAN : 196648195 - 196648258
LENGTH : 64
SEQUENCE : TGGGTTGAGAAATGTACTCTGCCACGTAGGAGCTAGGTAGTAGTTTGTACATTTCTTACTCCCT
OVERHANG THRESHOLD : 40%
*************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : CLUSTER-273
ACCID : ACC1234
PARENT : CLUSTER-273
CHROMOSOME : 1
START : 196648195
STOP : 196648258
OFFSET : 35..55
SEQUENCE : AGGTAGTAGTTTGTACATTTC
STRAND : +
******************************
*** MATURE ***
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TGGGTTGAGAAATGTACTCTGCCACGTAGGAGCTAGGTAGTAGTTTGTACATTTCTTACTCCCT REF 1 196648195 - 196648258
AGGTAGTAGTTTGTACATTTC MATURE 1 196648230 - 196648313 CLUSTER-273 +
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-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.................................gAGGTAGTAGTTTGTACATTT.......... 384559_GAGGTAGTAGTTTGTACATTT_44_80_103_9_23_29 MATURE 288 53.43 227 54.83 61 48.80 20
.................................gAGGTAGTAGTTTGTACATT........... 366000_GAGGTAGTAGTTTGTACATT_8_22_37_7_6_12 MATURE 92 17.07 67 16.18 25 20.00 19
.................................gAGGTAGTAGTTTGTACATTTt......... 247974_GAGGTAGTAGTTTGTACATTTT_8_13_23_1_5_4 MATURE 54 10.02 44 10.63 10 8.00 t 20
.................................gAGGTAGTAGTTTGTACATTTa......... 284491_GAGGTAGTAGTTTGTACATTTA_4_11_14_3_4_1 MATURE 37 6.86 29 7.00 8 6.40 a 20
.................................gAGGTAGTAGTTTGTACAT............ 261678_GAGGTAGTAGTTTGTACAT_7_7_4_1_4_3 MATURE 26 4.82 18 4.35 8 6.40 18
.................................gAGGTAGTAGTTTGTACATa........... 134371_GAGGTAGTAGTTTGTACATA_1_0_0_1_2_1 MATURE 5 0.93 1 0.24 4 3.20 a 18
.................................gAGGTAGTAGTTTGTACATTaa......... 31085_GAGGTAGTAGTTTGTACATTAA_0_2_1_0_1_0 MATURE 4 0.74 3 0.72 1 0.80 aa 19
.................................gAGGTAGTAGTTTGTACATTTg......... 139040_GAGGTAGTAGTTTGTACATTTG_0_1_2_0_0_1 MATURE 4 0.74 3 0.72 1 0.80 g 20
.................................gAGGTAGTAGTTTGTACATTTtt........ 293039_GAGGTAGTAGTTTGTACATTTTT_0_0_1_1_1_0 MATURE 3 0.56 1 0.24 2 1.60 tt 20
.................................gAGGTAGTAGTTTGTACATg........... 148346_GAGGTAGTAGTTTGTACATG_1_1_1_0_0_0 MATURE 3 0.56 3 0.72 0 0.00 g 18
.................................gAGGTAGTAGTTTGTACATTTat........ 315555_GAGGTAGTAGTTTGTACATTTAT_0_1_1_0_1_0 MATURE 3 0.56 2 0.48 1 0.80 at 20
.................................gAGGTAGTAGTTTGTACATTa.......... 299016_GAGGTAGTAGTTTGTACATTA_0_0_2_0_0_1 MATURE 3 0.56 2 0.48 1 0.80 a 19
.................................gAGGTAGTAGTTTGTACATTTaa........ 297291_GAGGTAGTAGTTTGTACATTTAA_0_0_2_0_0_0 MATURE 2 0.37 2 0.48 0 0.00 aa 20
.................................gAGGTAGTAGTTTGTACATTc.......... 181016_GAGGTAGTAGTTTGTACATTC_1_0_1_0_0_0 MATURE 2 0.37 2 0.48 0 0.00 c 19
.................................gAGGTAGTAGTTTGTACATct.......... 57938_GAGGTAGTAGTTTGTACATCT_1_1_0_0_0_0 MATURE 2 0.37 2 0.48 0 0.00 ct 18
.................................gAGGTAGTAGTTTGTACATTat......... 272070_GAGGTAGTAGTTTGTACATTAT_0_0_1_0_0_0 MATURE 1 0.19 1 0.24 0 0.00 at 19
.................................cAGGTAGTAGTTTGTACATTT.......... 128553_CAGGTAGTAGTTTGTACATTT_0_1_0_0_0_0 MATURE 1 0.19 1 0.24 0 0.00 20
.................................gAGGTAGTAGTTTGTACATTTC......... 17875_GAGGTAGTAGTTTGTACATTTC_1_0_0_0_0_0 MATURE 1 0.19 1 0.24 0 0.00 21
....................................GTAGTAGTTTGTACATTTt.......... 168140_GTAGTAGTTTGTACATTTT_0_0_0_1_0_0 MATURE 1 0.19 0 0.00 1 0.80 t 18
.................................gAGGTAGTAGTTTGTACATTTacttt..... 180812_GAGGTAGTAGTTTGTACATTTACTTT_0_0_0_0_0_1 MATURE 1 0.19 0 0.00 1 0.80 acttt 20
.................................TAGGTAGTAGTTTGTACAgta........... 100214_TAGGTAGTAGTTTGTACAGTA_1_0_0_0_0_0 MATURE 1 0.19 1 0.24 0 0.00 gta 18
.................................gAGGTAGTAGTTTGTACATat.......... 45176_GAGGTAGTAGTTTGTACATAT_0_0_0_1_0_0 MATURE 1 0.19 0 0.00 1 0.80 at 18
.................................TAGGTAGTAGTTTGTACAg............. 348423_TAGGTAGTAGTTTGTACAG_1_0_0_0_0_0 MATURE 1 0.19 1 0.24 0 0.00 g 18
.................................gAGGTAGTAGTTTGTACATgt.......... 260294_GAGGTAGTAGTTTGTACATGT_0_0_1_0_0_0 MATURE 1 0.19 1 0.24 0 0.00 gt 18
.................................gAGGTAGTAGTTTGTACATTct......... 166356_GAGGTAGTAGTTTGTACATTCT_0_0_1_0_0_0 MATURE 1 0.19 1 0.24 0 0.00 ct 19
.................................TAGGTAGTAGTTTGTAC............... 180057_TAGGTAGTAGTTTGTAC_0_1_0_0_0_0 MATURE 1 0.19 1 0.24 0 0.00 17
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539 414 125
(76.81) (23.19)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
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MATURE 414 125 539 100.00%
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414 125 539
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