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================================================================================
NOTE:
Reference is presented 5'-->3' for consistency; sequence is - strand alignment.
================================================================================
REFERENCE HAIRPIN
****************************************************************************************************
ID : CLUSTER-936 (mmu-mir-1306)
DESCRIPTION : CLUSTER-936
CHROMOSOME : 16
SPAN : 18284332 - 18284410
LENGTH : 79
SEQUENCE : CGGACTGTCCATCACCACCAGAGCCAACGTCCATTACCTCTGCATCACTGGACGTTTGCAGGGGAGGTGGTGGAGACTG
OVERHANG THRESHOLD : 40%
****************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : CLUSTER-936
ACCID : ACC1234
PARENT : CLUSTER-936
CHROMOSOME : 16
START : 18284332
STOP : 18284410
OFFSET : 50..69
SEQUENCE : GGACGTTTGCAGGGGAGGTG
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : CLUSTER-936*
ACCID : ACC1234
PARENT : CLUSTER-936
CHROMOSOME : 16
START : 18284332
STOP : 18284410
OFFSET : 11..30
SEQUENCE : ATCACCACCAGAGCCAACGT
STRAND : -
******************************
*** MATURE ***
_______________________________________________________________________________
CGGACTGTCCATCACCACCAGAGCCAACGTCCATTACCTCTGCATCACTGGACGTTTGCAGGGGAGGTGGTGGAGACTG REF 16 18284332 - 18284410
GGACGTTTGCAGGGGAGGTG MATURE 16 18284382 - 18284479 CLUSTER-936 -
ATCACCACCAGAGCCAACGT MATURESTAR 16 18284343 - 18284440 CLUSTER-936* -
_______________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.................................................GGACGTTTGCAGGGGAGGTG........... 95807_CACCTCCCCTGCAAACGTCC_16_12_8_3_3_7 MATURE 49 44.55 36 48.00 13 37.14 20
................................................TGGACGTTTGCAGGGGAGGTG........... 271009_CACCTCCCCTGCAAACGTCCA_11_6_1_1_3_3 MATURE 25 22.73 18 24.00 7 20.00 21
..................................................GACGTTTGCAGGGGAGGTG........... 227018_CACCTCCCCTGCAAACGTC_2_2_0_1_3_1 MATURE 9 8.18 4 5.33 5 14.29 19
...............................................aTGGACGTTTGCAGGGGAGGTG........... 183907_CACCTCCCCTGCAAACGTCCAT_2_2_1_2_1_0 MATURE 8 7.27 5 6.67 3 8.57 a 21
...............................................tTGGACGTTTGCAGGGGAGGTG........... 72034_CACCTCCCCTGCAAACGTCCAA_0_1_2_0_1_0 MATURE 4 3.64 3 4.00 1 2.86 t 21
.................................................tGACGTTTGCAGGGGAGGTG........... 200544_CACCTCCCCTGCAAACGTCA_0_1_0_0_2_0 MATURE 3 2.73 1 1.33 2 5.71 t 19
...................................................ACGTTTGCAGGGGAGGTG........... 92316_CACCTCCCCTGCAAACGT_0_0_0_0_1_1 MATURE 2 1.82 0 0.00 2 5.71 18
.................................................GGACGTTTGCAGGGGAGaTG........... 221694_CATCTCCCCTGCAAACGTCC_0_0_0_0_0_1 MATURE 1 0.91 0 0.00 1 2.86 2T17
...............................................aTGGACGTTTGCAtGGGAGGTG........... 283585_CACCTCCCATGCAAACGTCCAT_0_1_0_0_0_0 MATURE 1 0.91 1 1.33 0 0.00 a 8A12
...............................................aTGGACaTTTGCAGGGGAGGTG........... 340048_CACCTCCCCTGCAAATGTCCAT_0_0_1_0_0_0 MATURE 1 0.91 1 1.33 0 0.00 a 15T5
...............................................tTGGACGgTTGCAGGGGAGGTG........... 48137_CACCTCCCCTGCAACCGTCCAA_0_1_0_0_0_0 MATURE 1 0.91 1 1.33 0 0.00 t 14C6
.................................................GGACaTTTGCAGGGGAGGTG........... 86794_CACCTCCCCTGCAAATGTCC_0_1_0_0_0_0 MATURE 1 0.91 1 1.33 0 0.00 15T4
................................................TGGACGTTTGCAGGGGAGG............. 114144_CCTCCCCTGCAAACGTCCA_1_0_0_0_0_0 MATURE 1 0.91 1 1.33 0 0.00 19
.................................................GGACGTTTGCAGGGGAGGTa........... 110825_TACCTCCCCTGCAAACGTCC_0_1_0_0_0_0 MATURE 1 0.91 1 1.33 0 0.00 19
.................................................aGACGTTTGCAGGGGAGGTG........... 75537_CACCTCCCCTGCAAACGTCT_0_0_0_0_1_0 MATURE 1 0.91 0 0.00 1 2.86 a 19
.................................................GGACGcTTGCAGGGGAGGTG........... 117672_CACCTCCCCTGCAAGCGTCC_1_0_0_0_0_0 MATURE 1 0.91 1 1.33 0 0.00 14G5
.................................................GGACGTTTGtAGGGGAGGTG........... 154808_CACCTCCCCTACAAACGTCC_0_0_1_0_0_0 MATURE 1 0.91 1 1.33 0 0.00 10A9
---------- ---------- ----------
110 75 35
(68.18) (31.82)
*** MATURESTAR ***
_______________________________________________________________________________
CGGACTGTCCATCACCACCAGAGCCAACGTCCATTACCTCTGCATCACTGGACGTTTGCAGGGGAGGTGGTGGAGACTG REF 16 18284332 - 18284410
GGACGTTTGCAGGGGAGGTG MATURE 16 18284382 - 18284479 CLUSTER-936 -
ATCACCACCAGAGCCAACGT MATURESTAR 16 18284343 - 18284440 CLUSTER-936* -
_______________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
........aCATCACCACCAGAGCCAACGT.................................................. 406086_ACGTTGGCTCTGGTGGTGATGT_0_0_0_1_0_0 MATURESTAR 1 33.33 0 0.00 1 100.00 a 21
..........ATCACCACCAGAGCCAACGT.................................................. 123538_ACGTTGGCTCTGGTGGTGAT_0_0_1_0_0_0 MATURESTAR 1 33.33 1 50.00 0 0.00 20
.........tATCACCACCAGAGCCAACGT.................................................. 60005_ACGTTGGCTCTGGTGGTGATA_1_0_0_0_0_0 MATURESTAR 1 33.33 1 50.00 0 0.00 t 20
---------- ---------- ----------
3 2 1
(66.67) (33.33)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 75 35 110 97.35%
MATURESTAR 2 1 3 2.65%
---------- ---------- ----------
77 36 113
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