[BEGIN]

================================================================================
NOTE:
Reference is presented 5'-->3' for consistency; sequence is - strand alignment.
================================================================================

REFERENCE HAIRPIN
*******************************************************************************************************
ID                 : CLUSTER-719 (mmu-mir-3068)
DESCRIPTION        : CLUSTER-719
CHROMOSOME         : 12
SPAN               : 88778625 - 88778706
LENGTH             : 82
SEQUENCE           : GGAAGCAGAATGTTGGAGTACTGCAATTCACCCAGCTACTGAGTAAGCTGGTTAGAACTTGCATGAACTCCAATTACTCTCG
OVERHANG THRESHOLD : 40%
*******************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : CLUSTER-719
ACCID      : ACC1234
PARENT     : CLUSTER-719
CHROMOSOME : 12
START      : 88778625
STOP       : 88778706
OFFSET     : 54..72
SEQUENCE   : AGAACTTGCATGAACTCCA
STRAND     : -
******************************


TARGET
******************************
CATEGORY   : MATURESTAR
ID         : CLUSTER-719*
ACCID      : ACC1234
PARENT     : CLUSTER-719
CHROMOSOME : 12
START      : 88778625
STOP       : 88778706
OFFSET     : 8..29
SEQUENCE   : GAATGTTGGAGTACTGCAATTC
STRAND     : -
******************************



*** MATURE ***
__________________________________________________________________________________
GGAAGCAGAATGTTGGAGTACTGCAATTCACCCAGCTACTGAGTAAGCTGGTTAGAACTTGCATGAACTCCAATTACTCTCG REF                  12                   88778625 - 88778706
                                                     AGAACTTGCATGAACTCCA           MATURE               12                   88778679 - 88778778  CLUSTER-719          -
       GAATGTTGGAGTACTGCAATTC                                                      MATURESTAR           12                   88778633 - 88778735  CLUSTER-719*         -
__________________________________________________________________________________

                                                                              -SEQ-                                          -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-
.....................................................AGAACTTGCATGAACTCCA...........         358786_TGGAGTTCATGCAAGTTCT_14_7_5_9_4_4       MATURE           43        28.86           26        26.00           17        34.69                        19
.................................................GGTTAGAACTTGCATGAACTCCA...........      376622_TGGAGTTCATGCAAGTTCTAACC_4_9_5_1_1_0       MATURE           20        13.42           18        18.00            2         4.08                        23
....................................................TAGAACTTGCATGAACTCCA...........         255488_TGGAGTTCATGCAAGTTCTA_6_3_6_2_1_1       MATURE           19        12.75           15        15.00            4         8.16                        20
...................................................TTAGAACTTGCATGAACTCCA...........        214224_TGGAGTTCATGCAAGTTCTAA_6_1_2_2_3_3       MATURE           17        11.41            9         9.00            8        16.33                        21
..................................................GTTAGAACTTGCATGAACTCCA...........       247900_TGGAGTTCATGCAAGTTCTAAC_4_1_6_0_3_0       MATURE           14         9.40           11        11.00            3         6.12                        22
.................................................aGTTAGAACTTGCATGAACTCCA...........       37807_TGGAGTTCATGCAAGTTCTAACT_0_4_2_0_0_0       MATURE            6         4.03            6         6.00            0         0.00            a           22
................................................TGGTTAGAACTTGCATGAACTCCA...........     346137_TGGAGTTCATGCAAGTTCTAACCA_1_1_0_0_1_3       MATURE            6         4.03            2         2.00            4         8.16                        24
..................................................aTTAGAACTTGCATGAACTCCA...........        56307_TGGAGTTCATGCAAGTTCTAAT_0_0_2_0_1_1       MATURE            4         2.68            2         2.00            2         4.08            a           21
.......................................................AACTTGCATGAACTCCA...........            300975_TGGAGTTCATGCAAGTT_0_0_0_0_1_1       MATURE            2         1.34            0         0.00            2         4.08                        17
.................................................tGTTAGAACTTGCATGAACTCCA...........      333473_TGGAGTTCATGCAAGTTCTAACA_1_0_0_0_1_0       MATURE            2         1.34            1         1.00            1         2.04            t           22
.....................................................AGAACTTGCATGAACTCC............           149733_GGAGTTCATGCAAGTTCT_0_1_0_0_1_0       MATURE            2         1.34            1         1.00            1         2.04                        18
..............................................atTGGTTAGAACTTGCATGAACTCCA...........    46730_TGGAGTTCATGCAAGTTCTAACCAAT_0_0_1_0_0_0       MATURE            1         0.67            1         1.00            0         0.00           at           24
...................................................aTAGAACTTGCATGAACTCCA...........        390256_TGGAGTTCATGCAAGTTCTAT_1_0_0_0_0_0       MATURE            1         0.67            1         1.00            0         0.00            a           20
.................................................gtTTAGAACTTGCATGAACTCCA...........      285699_TGGAGTTCATGCAAGTTCTAAAC_1_0_0_0_0_0       MATURE            1         0.67            1         1.00            0         0.00           gt           21
..................................................aTTAGAACTTGCATGAACTCC............        313556_GGAGTTCATGCAAGTTCTAAT_0_1_0_0_0_0       MATURE            1         0.67            1         1.00            0         0.00            a           20
.................................................tcTTAGAACTTGCATGAACTCCA...........      357080_TGGAGTTCATGCAAGTTCTAAGA_1_0_0_0_0_0       MATURE            1         0.67            1         1.00            0         0.00           tc           21
..................................................aaTAGAACTTGCATGAACTCCA...........       370342_TGGAGTTCATGCAAGTTCTATT_0_0_1_0_0_0       MATURE            1         0.67            1         1.00            0         0.00           aa           20
.................................................GGTTAGtACTTGCATGAACTCCA...........      129022_TGGAGTTCATGCAAGTACTAACC_0_1_0_0_0_0       MATURE            1         0.67            1         1.00            0         0.00                      16A6
.................................................atTTAGAACTTGCATGAACTCCA...........      118738_TGGAGTTCATGCAAGTTCTAAAT_1_0_0_0_0_0       MATURE            1         0.67            1         1.00            0         0.00           at           21
..................................................GTTAGAACTTGCATGAACTCC............         78640_GGAGTTCATGCAAGTTCTAAC_0_0_0_1_0_0       MATURE            1         0.67            0         0.00            1         2.04                        21
...............................................aTGGTTAGAACTTGCATGAACTCCA...........     65055_TGGAGTTCATGCAAGTTCTAACCAT_0_0_0_0_1_0       MATURE            1         0.67            0         0.00            1         2.04            a           24
...................................................TTAGAACTTGCATGAACTCC............          55835_GGAGTTCATGCAAGTTCTAA_0_0_0_1_0_0       MATURE            1         0.67            0         0.00            1         2.04                        20
.................................................GGTTAGAACTTGCATGAACTCC............       244235_GGAGTTCATGCAAGTTCTAACC_0_0_0_0_1_0       MATURE            1         0.67            0         0.00            1         2.04                        22
......................................................GAACTTGCATGAACTCCA...........           260156_TGGAGTTCATGCAAGTTC_1_0_0_0_0_0       MATURE            1         0.67            1         1.00            0         0.00                        18
.................................................ttTTAGAACTTGCATGAACTCCA...........      216395_TGGAGTTCATGCAAGTTCTAAAA_0_0_0_0_1_0       MATURE            1         0.67            0         0.00            1         2.04           tt           21
                                                                                                                                                   ----------                ----------                ----------
                                                                                                                                                          149                       100                        49
                                                                                                                                                                                (67.11)                   (32.89)




*** MATURESTAR ***
__________________________________________________________________________________
GGAAGCAGAATGTTGGAGTACTGCAATTCACCCAGCTACTGAGTAAGCTGGTTAGAACTTGCATGAACTCCAATTACTCTCG REF                  12                   88778625 - 88778706
                                                     AGAACTTGCATGAACTCCA           MATURE               12                   88778679 - 88778778  CLUSTER-719          -
       GAATGTTGGAGTACTGCAATTC                                                      MATURESTAR           12                   88778633 - 88778735  CLUSTER-719*         -
__________________________________________________________________________________

                                                                              -SEQ-                                        -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-
.........ATGTTGGAGTACTGCAATTC......................................................       186678_GAATTGCAGTACTCCAACAT_1_1_0_0_0_0   MATURESTAR            2        22.22            2        40.00            0         0.00                        20
.......GAATGTTGGAGTACTGC...........................................................          369797_GCAGTACTCCAACATTC_0_0_0_0_2_0   MATURESTAR            2        22.22            0         0.00            2        50.00                        17
.......GAATGTTGGAGTACTGCA..........................................................         396375_TGCAGTACTCCAACATTC_1_0_0_0_0_1   MATURESTAR            2        22.22            1        20.00            1        25.00                        18
.........ATGTTGtAGTACTGCAATTC......................................................       139392_GAATTGCAGTACTACAACAT_0_1_0_0_0_0   MATURESTAR            1        11.11            1        20.00            0         0.00                      13A6
.......ttATGTTGGAGTACTGCAATTC......................................................      91763_GAATTGCAGTACTCCAACATAA_0_0_0_0_1_0   MATURESTAR            1        11.11            0         0.00            1        25.00           tt           20
............TTGGAGTACTGCAATTCAC....................................................         27322_GTGAATTGCAGTACTCCAA_0_1_0_0_0_0   MATURESTAR            1        11.11            1        20.00            0         0.00                        19
                                                                                                                                                 ----------                ----------                ----------
                                                                                                                                                          9                         5                         4
                                                                                                                                                                              (55.56)                   (44.44)




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE             100              49             149          94.30%
     MATURESTAR               5               4               9           5.70%
                     ----------      ----------      ----------
                            105              53             158



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