[BEGIN]
================================================================================
NOTE:
Reference is presented 5'-->3' for consistency; sequence is - strand alignment.
================================================================================
REFERENCE HAIRPIN
*******************************************************************************************************
ID : CLUSTER-719 (mmu-mir-3068)
DESCRIPTION : CLUSTER-719
CHROMOSOME : 12
SPAN : 88778625 - 88778706
LENGTH : 82
SEQUENCE : GGAAGCAGAATGTTGGAGTACTGCAATTCACCCAGCTACTGAGTAAGCTGGTTAGAACTTGCATGAACTCCAATTACTCTCG
OVERHANG THRESHOLD : 40%
*******************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : CLUSTER-719
ACCID : ACC1234
PARENT : CLUSTER-719
CHROMOSOME : 12
START : 88778625
STOP : 88778706
OFFSET : 54..72
SEQUENCE : AGAACTTGCATGAACTCCA
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : CLUSTER-719*
ACCID : ACC1234
PARENT : CLUSTER-719
CHROMOSOME : 12
START : 88778625
STOP : 88778706
OFFSET : 8..29
SEQUENCE : GAATGTTGGAGTACTGCAATTC
STRAND : -
******************************
*** MATURE ***
__________________________________________________________________________________
GGAAGCAGAATGTTGGAGTACTGCAATTCACCCAGCTACTGAGTAAGCTGGTTAGAACTTGCATGAACTCCAATTACTCTCG REF 12 88778625 - 88778706
AGAACTTGCATGAACTCCA MATURE 12 88778679 - 88778778 CLUSTER-719 -
GAATGTTGGAGTACTGCAATTC MATURESTAR 12 88778633 - 88778735 CLUSTER-719* -
__________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.....................................................AGAACTTGCATGAACTCCA........... 358786_TGGAGTTCATGCAAGTTCT_14_7_5_9_4_4 MATURE 43 28.86 26 26.00 17 34.69 19
.................................................GGTTAGAACTTGCATGAACTCCA........... 376622_TGGAGTTCATGCAAGTTCTAACC_4_9_5_1_1_0 MATURE 20 13.42 18 18.00 2 4.08 23
....................................................TAGAACTTGCATGAACTCCA........... 255488_TGGAGTTCATGCAAGTTCTA_6_3_6_2_1_1 MATURE 19 12.75 15 15.00 4 8.16 20
...................................................TTAGAACTTGCATGAACTCCA........... 214224_TGGAGTTCATGCAAGTTCTAA_6_1_2_2_3_3 MATURE 17 11.41 9 9.00 8 16.33 21
..................................................GTTAGAACTTGCATGAACTCCA........... 247900_TGGAGTTCATGCAAGTTCTAAC_4_1_6_0_3_0 MATURE 14 9.40 11 11.00 3 6.12 22
.................................................aGTTAGAACTTGCATGAACTCCA........... 37807_TGGAGTTCATGCAAGTTCTAACT_0_4_2_0_0_0 MATURE 6 4.03 6 6.00 0 0.00 a 22
................................................TGGTTAGAACTTGCATGAACTCCA........... 346137_TGGAGTTCATGCAAGTTCTAACCA_1_1_0_0_1_3 MATURE 6 4.03 2 2.00 4 8.16 24
..................................................aTTAGAACTTGCATGAACTCCA........... 56307_TGGAGTTCATGCAAGTTCTAAT_0_0_2_0_1_1 MATURE 4 2.68 2 2.00 2 4.08 a 21
.......................................................AACTTGCATGAACTCCA........... 300975_TGGAGTTCATGCAAGTT_0_0_0_0_1_1 MATURE 2 1.34 0 0.00 2 4.08 17
.................................................tGTTAGAACTTGCATGAACTCCA........... 333473_TGGAGTTCATGCAAGTTCTAACA_1_0_0_0_1_0 MATURE 2 1.34 1 1.00 1 2.04 t 22
.....................................................AGAACTTGCATGAACTCC............ 149733_GGAGTTCATGCAAGTTCT_0_1_0_0_1_0 MATURE 2 1.34 1 1.00 1 2.04 18
..............................................atTGGTTAGAACTTGCATGAACTCCA........... 46730_TGGAGTTCATGCAAGTTCTAACCAAT_0_0_1_0_0_0 MATURE 1 0.67 1 1.00 0 0.00 at 24
...................................................aTAGAACTTGCATGAACTCCA........... 390256_TGGAGTTCATGCAAGTTCTAT_1_0_0_0_0_0 MATURE 1 0.67 1 1.00 0 0.00 a 20
.................................................gtTTAGAACTTGCATGAACTCCA........... 285699_TGGAGTTCATGCAAGTTCTAAAC_1_0_0_0_0_0 MATURE 1 0.67 1 1.00 0 0.00 gt 21
..................................................aTTAGAACTTGCATGAACTCC............ 313556_GGAGTTCATGCAAGTTCTAAT_0_1_0_0_0_0 MATURE 1 0.67 1 1.00 0 0.00 a 20
.................................................tcTTAGAACTTGCATGAACTCCA........... 357080_TGGAGTTCATGCAAGTTCTAAGA_1_0_0_0_0_0 MATURE 1 0.67 1 1.00 0 0.00 tc 21
..................................................aaTAGAACTTGCATGAACTCCA........... 370342_TGGAGTTCATGCAAGTTCTATT_0_0_1_0_0_0 MATURE 1 0.67 1 1.00 0 0.00 aa 20
.................................................GGTTAGtACTTGCATGAACTCCA........... 129022_TGGAGTTCATGCAAGTACTAACC_0_1_0_0_0_0 MATURE 1 0.67 1 1.00 0 0.00 16A6
.................................................atTTAGAACTTGCATGAACTCCA........... 118738_TGGAGTTCATGCAAGTTCTAAAT_1_0_0_0_0_0 MATURE 1 0.67 1 1.00 0 0.00 at 21
..................................................GTTAGAACTTGCATGAACTCC............ 78640_GGAGTTCATGCAAGTTCTAAC_0_0_0_1_0_0 MATURE 1 0.67 0 0.00 1 2.04 21
...............................................aTGGTTAGAACTTGCATGAACTCCA........... 65055_TGGAGTTCATGCAAGTTCTAACCAT_0_0_0_0_1_0 MATURE 1 0.67 0 0.00 1 2.04 a 24
...................................................TTAGAACTTGCATGAACTCC............ 55835_GGAGTTCATGCAAGTTCTAA_0_0_0_1_0_0 MATURE 1 0.67 0 0.00 1 2.04 20
.................................................GGTTAGAACTTGCATGAACTCC............ 244235_GGAGTTCATGCAAGTTCTAACC_0_0_0_0_1_0 MATURE 1 0.67 0 0.00 1 2.04 22
......................................................GAACTTGCATGAACTCCA........... 260156_TGGAGTTCATGCAAGTTC_1_0_0_0_0_0 MATURE 1 0.67 1 1.00 0 0.00 18
.................................................ttTTAGAACTTGCATGAACTCCA........... 216395_TGGAGTTCATGCAAGTTCTAAAA_0_0_0_0_1_0 MATURE 1 0.67 0 0.00 1 2.04 tt 21
---------- ---------- ----------
149 100 49
(67.11) (32.89)
*** MATURESTAR ***
__________________________________________________________________________________
GGAAGCAGAATGTTGGAGTACTGCAATTCACCCAGCTACTGAGTAAGCTGGTTAGAACTTGCATGAACTCCAATTACTCTCG REF 12 88778625 - 88778706
AGAACTTGCATGAACTCCA MATURE 12 88778679 - 88778778 CLUSTER-719 -
GAATGTTGGAGTACTGCAATTC MATURESTAR 12 88778633 - 88778735 CLUSTER-719* -
__________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.........ATGTTGGAGTACTGCAATTC...................................................... 186678_GAATTGCAGTACTCCAACAT_1_1_0_0_0_0 MATURESTAR 2 22.22 2 40.00 0 0.00 20
.......GAATGTTGGAGTACTGC........................................................... 369797_GCAGTACTCCAACATTC_0_0_0_0_2_0 MATURESTAR 2 22.22 0 0.00 2 50.00 17
.......GAATGTTGGAGTACTGCA.......................................................... 396375_TGCAGTACTCCAACATTC_1_0_0_0_0_1 MATURESTAR 2 22.22 1 20.00 1 25.00 18
.........ATGTTGtAGTACTGCAATTC...................................................... 139392_GAATTGCAGTACTACAACAT_0_1_0_0_0_0 MATURESTAR 1 11.11 1 20.00 0 0.00 13A6
.......ttATGTTGGAGTACTGCAATTC...................................................... 91763_GAATTGCAGTACTCCAACATAA_0_0_0_0_1_0 MATURESTAR 1 11.11 0 0.00 1 25.00 tt 20
............TTGGAGTACTGCAATTCAC.................................................... 27322_GTGAATTGCAGTACTCCAA_0_1_0_0_0_0 MATURESTAR 1 11.11 1 20.00 0 0.00 19
---------- ---------- ----------
9 5 4
(55.56) (44.44)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 100 49 149 94.30%
MATURESTAR 5 4 9 5.70%
---------- ---------- ----------
105 53 158
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