[BEGIN]

================================================================================
NOTE:
Reference is presented 5'-->3' for consistency; sequence is - strand alignment.
================================================================================

REFERENCE HAIRPIN
************************************************************************************************
ID                 : CLUSTER-621 (mmu-mir-101c)
DESCRIPTION        : CLUSTER-621
CHROMOSOME         : 9
SPAN               : 3038669 - 3038743
LENGTH             : 75
SEQUENCE           : CAGTTAGGCGATCAGTTATCACAGTACTGTGCAGTTGAGCAGTCAGTCATCACAGGACTGTGCAGTAGGGCATCA
OVERHANG THRESHOLD : 40%
************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : CLUSTER-621
ACCID      : ACC1234
PARENT     : CLUSTER-621
CHROMOSOME : 9
START      : 3038669
STOP       : 3038743
OFFSET     : 11..31
SEQUENCE   : ATCAGTTATCACAGTACTGTG
STRAND     : -
******************************



*** MATURE ***
___________________________________________________________________________
CAGTTAGGCGATCAGTTATCACAGTACTGTGCAGTTGAGCAGTCAGTCATCACAGGACTGTGCAGTAGGGCATCA REF                  9                    3038669 - 3038743
          ATCAGTTATCACAGTACTGTG                                             MATURE               9                    3038680 - 3038774    CLUSTER-621          -
___________________________________________________________________________

                                                                       -SEQ-                                        -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-
...........TCAGTTATCACAGTACTGT..............................................   245219_ACAGTACTGTGATAACTGA_22_19_12_22_8_13       MATURE           96        38.71           53        40.77           43        36.44                        19
..........tTCAGTTATCACAGTACTGT..............................................      160501_ACAGTACTGTGATAACTGAA_7_12_7_6_3_9       MATURE           44        17.74           26        20.00           18        15.25            t           19
.............AGTTATCACAGTACTGT..............................................           85197_ACAGTACTGTGATAACT_1_2_0_9_5_9       MATURE           26        10.48            3         2.31           23        19.49                        17
.........agTCAGTTATCACAGTACTGT..............................................       58286_ACAGTACTGTGATAACTGACT_4_9_3_1_3_0       MATURE           20         8.06           16        12.31            4         3.39           ag           19
............CAGTTATCACAGTACTGT..............................................         255363_ACAGTACTGTGATAACTG_2_1_3_1_1_6       MATURE           14         5.65            6         4.62            8         6.78                        18
.........aATCAGTTATCACAGTACTGT..............................................      118670_ACAGTACTGTGATAACTGATT_1_2_2_2_0_1       MATURE            8         3.23            5         3.85            3         2.54            a           20
..........ATCAGTTATCACAGTACTGT..............................................       411562_ACAGTACTGTGATAACTGAT_3_2_0_0_2_0       MATURE            7         2.82            5         3.85            2         1.69                        20
...........TCAGTTATCACAGTACT................................................           96784_AGTACTGTGATAACTGA_0_0_0_3_3_1       MATURE            7         2.82            0         0.00            7         5.93                        17
..........cTCAGTTATCACAGTACTGT..............................................        49105_ACAGTACTGTGATAACTGAG_2_0_0_1_1_1       MATURE            5         2.02            2         1.54            3         2.54            c           19
...........aCAGTTATCACAGTACTGT..............................................        299752_ACAGTACTGTGATAACTGT_1_1_0_1_0_0       MATURE            3         1.21            2         1.54            1         0.85            a           18
.........ccTCAGTTATCACAGTACTGT..............................................       42136_ACAGTACTGTGATAACTGAGG_1_1_0_0_0_0       MATURE            2         0.81            2         1.54            0         0.00           cc           19
.........cgTCAGTTATCACAGTACTGT..............................................       10353_ACAGTACTGTGATAACTGACG_0_1_0_0_1_0       MATURE            2         0.81            1         0.77            1         0.85           cg           19
.........atTCAGTTATCACAGTACTGg..............................................       18192_CCAGTACTGTGATAACTGAAT_0_1_0_1_0_0       MATURE            2         0.81            1         0.77            1         0.85           at           18
.........ctgCAGTTATCACAGTACTGT..............................................      194252_ACAGTACTGTGATAACTGCAG_1_0_0_0_0_0       MATURE            1         0.40            1         0.77            0         0.00          ctg           18
...........TCAGTTATCACAGTACTGg..............................................        399818_CCAGTACTGTGATAACTGA_1_0_0_0_0_0       MATURE            1         0.40            1         0.77            0         0.00                        18
..........ATCAGTTtTCACAGTACTGT..............................................        37447_ACAGTACTGTGAAAACTGAT_0_0_0_0_1_0       MATURE            1         0.40            0         0.00            1         0.85                      12A7
..........ATCAGcTATCACAGTACTGTG.............................................      275674_CACAGTACTGTGATAGCTGAT_0_1_0_0_0_0       MATURE            1         0.40            1         0.77            0         0.00                      15G5
.........tcTCAGTTATCACAGTACTGT..............................................      279272_ACAGTACTGTGATAACTGAGA_0_1_0_0_0_0       MATURE            1         0.40            1         0.77            0         0.00           tc           19
..........gTCAGTTATCACAGTACTGT..............................................       328923_ACAGTACTGTGATAACTGAC_0_1_0_0_0_0       MATURE            1         0.40            1         0.77            0         0.00            g           19
.........cATCAGTTATCACAGTACTGT..............................................      409607_ACAGTACTGTGATAACTGATG_0_0_0_0_0_1       MATURE            1         0.40            0         0.00            1         0.85            c           20
.........cATCAGTTATCACAGTACTGTa.............................................      38809_TACAGTACTGTGATAACTGATG_0_0_0_0_1_0       MATURE            1         0.40            0         0.00            1         0.85            c           20
.........tgTCAGTTATCACAGTACTGT..............................................      116121_ACAGTACTGTGATAACTGACA_0_1_0_0_0_0       MATURE            1         0.40            1         0.77            0         0.00           tg           19
.........acTCAGTTATCACAGTACTGT..............................................      281645_ACAGTACTGTGATAACTGAGT_1_0_0_0_0_0       MATURE            1         0.40            1         0.77            0         0.00           ac           19
.........ctaCAGTTATCACAGTACTGT..............................................       24729_ACAGTACTGTGATAACTGTAG_1_0_0_0_0_0       MATURE            1         0.40            1         0.77            0         0.00          cta           18
.........atTCAGTTATCACAGTACTGc..............................................      165274_GCAGTACTGTGATAACTGAAT_0_0_0_1_0_0       MATURE            1         0.40            0         0.00            1         0.85           at           18
                                                                                                                                          ----------                ----------                ----------
                                                                                                                                                 248                       130                       118
                                                                                                                                                                       (52.42)                   (47.58)




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE             130             118             248         100.00%
                     ----------      ----------      ----------
                            130             118             248



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