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NOTE:
Reference is presented 5'-->3' for consistency; sequence is - strand alignment.
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REFERENCE HAIRPIN
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ID : CLUSTER-621 (mmu-mir-101c)
DESCRIPTION : CLUSTER-621
CHROMOSOME : 9
SPAN : 3038669 - 3038743
LENGTH : 75
SEQUENCE : CAGTTAGGCGATCAGTTATCACAGTACTGTGCAGTTGAGCAGTCAGTCATCACAGGACTGTGCAGTAGGGCATCA
OVERHANG THRESHOLD : 40%
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TARGET
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CATEGORY : MATURE
ID : CLUSTER-621
ACCID : ACC1234
PARENT : CLUSTER-621
CHROMOSOME : 9
START : 3038669
STOP : 3038743
OFFSET : 11..31
SEQUENCE : ATCAGTTATCACAGTACTGTG
STRAND : -
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*** MATURE ***
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CAGTTAGGCGATCAGTTATCACAGTACTGTGCAGTTGAGCAGTCAGTCATCACAGGACTGTGCAGTAGGGCATCA REF 9 3038669 - 3038743
ATCAGTTATCACAGTACTGTG MATURE 9 3038680 - 3038774 CLUSTER-621 -
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-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...........TCAGTTATCACAGTACTGT.............................................. 245219_ACAGTACTGTGATAACTGA_22_19_12_22_8_13 MATURE 96 38.71 53 40.77 43 36.44 19
..........tTCAGTTATCACAGTACTGT.............................................. 160501_ACAGTACTGTGATAACTGAA_7_12_7_6_3_9 MATURE 44 17.74 26 20.00 18 15.25 t 19
.............AGTTATCACAGTACTGT.............................................. 85197_ACAGTACTGTGATAACT_1_2_0_9_5_9 MATURE 26 10.48 3 2.31 23 19.49 17
.........agTCAGTTATCACAGTACTGT.............................................. 58286_ACAGTACTGTGATAACTGACT_4_9_3_1_3_0 MATURE 20 8.06 16 12.31 4 3.39 ag 19
............CAGTTATCACAGTACTGT.............................................. 255363_ACAGTACTGTGATAACTG_2_1_3_1_1_6 MATURE 14 5.65 6 4.62 8 6.78 18
.........aATCAGTTATCACAGTACTGT.............................................. 118670_ACAGTACTGTGATAACTGATT_1_2_2_2_0_1 MATURE 8 3.23 5 3.85 3 2.54 a 20
..........ATCAGTTATCACAGTACTGT.............................................. 411562_ACAGTACTGTGATAACTGAT_3_2_0_0_2_0 MATURE 7 2.82 5 3.85 2 1.69 20
...........TCAGTTATCACAGTACT................................................ 96784_AGTACTGTGATAACTGA_0_0_0_3_3_1 MATURE 7 2.82 0 0.00 7 5.93 17
..........cTCAGTTATCACAGTACTGT.............................................. 49105_ACAGTACTGTGATAACTGAG_2_0_0_1_1_1 MATURE 5 2.02 2 1.54 3 2.54 c 19
...........aCAGTTATCACAGTACTGT.............................................. 299752_ACAGTACTGTGATAACTGT_1_1_0_1_0_0 MATURE 3 1.21 2 1.54 1 0.85 a 18
.........ccTCAGTTATCACAGTACTGT.............................................. 42136_ACAGTACTGTGATAACTGAGG_1_1_0_0_0_0 MATURE 2 0.81 2 1.54 0 0.00 cc 19
.........cgTCAGTTATCACAGTACTGT.............................................. 10353_ACAGTACTGTGATAACTGACG_0_1_0_0_1_0 MATURE 2 0.81 1 0.77 1 0.85 cg 19
.........atTCAGTTATCACAGTACTGg.............................................. 18192_CCAGTACTGTGATAACTGAAT_0_1_0_1_0_0 MATURE 2 0.81 1 0.77 1 0.85 at 18
.........ctgCAGTTATCACAGTACTGT.............................................. 194252_ACAGTACTGTGATAACTGCAG_1_0_0_0_0_0 MATURE 1 0.40 1 0.77 0 0.00 ctg 18
...........TCAGTTATCACAGTACTGg.............................................. 399818_CCAGTACTGTGATAACTGA_1_0_0_0_0_0 MATURE 1 0.40 1 0.77 0 0.00 18
..........ATCAGTTtTCACAGTACTGT.............................................. 37447_ACAGTACTGTGAAAACTGAT_0_0_0_0_1_0 MATURE 1 0.40 0 0.00 1 0.85 12A7
..........ATCAGcTATCACAGTACTGTG............................................. 275674_CACAGTACTGTGATAGCTGAT_0_1_0_0_0_0 MATURE 1 0.40 1 0.77 0 0.00 15G5
.........tcTCAGTTATCACAGTACTGT.............................................. 279272_ACAGTACTGTGATAACTGAGA_0_1_0_0_0_0 MATURE 1 0.40 1 0.77 0 0.00 tc 19
..........gTCAGTTATCACAGTACTGT.............................................. 328923_ACAGTACTGTGATAACTGAC_0_1_0_0_0_0 MATURE 1 0.40 1 0.77 0 0.00 g 19
.........cATCAGTTATCACAGTACTGT.............................................. 409607_ACAGTACTGTGATAACTGATG_0_0_0_0_0_1 MATURE 1 0.40 0 0.00 1 0.85 c 20
.........cATCAGTTATCACAGTACTGTa............................................. 38809_TACAGTACTGTGATAACTGATG_0_0_0_0_1_0 MATURE 1 0.40 0 0.00 1 0.85 c 20
.........tgTCAGTTATCACAGTACTGT.............................................. 116121_ACAGTACTGTGATAACTGACA_0_1_0_0_0_0 MATURE 1 0.40 1 0.77 0 0.00 tg 19
.........acTCAGTTATCACAGTACTGT.............................................. 281645_ACAGTACTGTGATAACTGAGT_1_0_0_0_0_0 MATURE 1 0.40 1 0.77 0 0.00 ac 19
.........ctaCAGTTATCACAGTACTGT.............................................. 24729_ACAGTACTGTGATAACTGTAG_1_0_0_0_0_0 MATURE 1 0.40 1 0.77 0 0.00 cta 18
.........atTCAGTTATCACAGTACTGc.............................................. 165274_GCAGTACTGTGATAACTGAAT_0_0_0_1_0_0 MATURE 1 0.40 0 0.00 1 0.85 at 18
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248 130 118
(52.42) (47.58)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
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MATURE 130 118 248 100.00%
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130 118 248
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