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================================================================================
NOTE:
Reference is presented 5'-->3' for consistency; sequence is - strand alignment.
================================================================================

REFERENCE HAIRPIN
********************************************************************************
ID                 : CLUSTER-40 (mmu-mir-3961)
DESCRIPTION        : CLUSTER-40
CHROMOSOME         : 13
SPAN               : 82837274 - 82837332
LENGTH             : 59
SEQUENCE           : TTGTCCAACTGAGCTGAGGGCAGCTGATACTCAACTGCTCTGAGTGCATTTGGTCCTCT
OVERHANG THRESHOLD : 40%
********************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : CLUSTER-40
ACCID      : ACC1234
PARENT     : CLUSTER-40
CHROMOSOME : 13
START      : 82837274
STOP       : 82837332
OFFSET     : 4..21
SEQUENCE   : TCCAACTGAGCTGAGGGC
STRAND     : -
******************************



*** MATURE ***
___________________________________________________________
TTGTCCAACTGAGCTGAGGGCAGCTGATACTCAACTGCTCTGAGTGCATTTGGTCCTCT REF                  13                   82837274 - 82837332
   TCCAACTGAGCTGAGGGC                                       MATURE               13                   82837278 - 82837353  CLUSTER-40           -
___________________________________________________________

                                                       -SEQ-                                           -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-
cTGTCCAACTGAGCTGAGGGCg......................................   363727_CGCCCTCAGCTCAGTTGGACAGAGCAA_1_1_0_3_5_1       MATURE           11        39.29            2        50.00            9        37.50       ttgctc           20
ctaTCCAACTGAGCTGAGGGCA......................................   122059_TGCCCTCAGCTCAGTTGGATAGAGCAA_0_1_0_1_2_0       MATURE            4        14.29            1        25.00            3        12.50     ttgctcta           19
.taTCCAACTGAGCTGAGGGCg......................................         399006_CGCCCTCAGCTCAGTTGGATA_0_0_1_1_1_0       MATURE            3        10.71            1        25.00            2         8.33           ta           18
ctaTCCAACTGAGCTGAGGGCg......................................        179031_CGCCCTCAGCTCAGTTGGATAG_0_0_0_1_2_0       MATURE            3        10.71            0         0.00            3        12.50          cta           18
ctaTCCAACTGAGCTGAGGGCA......................................   394815_TGCCCTCAGCTCAGTTGGATAGAGCAC_0_0_0_0_2_0       MATURE            2         7.14            0         0.00            2         8.33     gtgctcta           19
ctaTCCAACTGAGCTGAGGGCA......................................   349211_TGCCCTCAGCTCAGTTGGATAGAGCTA_0_0_0_1_0_0       MATURE            1         3.57            0         0.00            1         4.17     tagctcta           19
cTGTCCAACTGAGCTGAGGGCg......................................   220265_CGCCCTCAGCTCAGTTGGACAGAGCAC_0_0_0_0_1_0       MATURE            1         3.57            0         0.00            1         4.17       gtgctc           20
..aTCCAACTGAGCTGAGGGCg......................................          394768_CGCCCTCAGCTCAGTTGGAT_0_0_0_0_1_0       MATURE            1         3.57            0         0.00            1         4.17            a           18
...TCCAACTGAGCTGAGGGCg......................................           253747_CGCCCTCAGCTCAGTTGGA_0_0_0_0_1_0       MATURE            1         3.57            0         0.00            1         4.17                        18
..tTCCAACTGAGCTGAGGGCg......................................          273152_CGCCCTCAGCTCAGTTGGAA_0_0_0_0_1_0       MATURE            1         3.57            0         0.00            1         4.17            t           18
                                                                                                                             ----------                ----------                ----------
                                                                                                                                     28                         4                        24
                                                                                                                                                          (14.29)                   (85.71)




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE               4              24              28         100.00%
                     ----------      ----------      ----------
                              4              24              28



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