[BEGIN]
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NOTE:
Reference is presented 5'-->3' for consistency; sequence is - strand alignment.
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REFERENCE HAIRPIN
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ID : CLUSTER-40 (mmu-mir-3961)
DESCRIPTION : CLUSTER-40
CHROMOSOME : 13
SPAN : 82837274 - 82837332
LENGTH : 59
SEQUENCE : TTGTCCAACTGAGCTGAGGGCAGCTGATACTCAACTGCTCTGAGTGCATTTGGTCCTCT
OVERHANG THRESHOLD : 40%
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TARGET
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CATEGORY : MATURE
ID : CLUSTER-40
ACCID : ACC1234
PARENT : CLUSTER-40
CHROMOSOME : 13
START : 82837274
STOP : 82837332
OFFSET : 4..21
SEQUENCE : TCCAACTGAGCTGAGGGC
STRAND : -
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*** MATURE ***
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TTGTCCAACTGAGCTGAGGGCAGCTGATACTCAACTGCTCTGAGTGCATTTGGTCCTCT REF 13 82837274 - 82837332
TCCAACTGAGCTGAGGGC MATURE 13 82837278 - 82837353 CLUSTER-40 -
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-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
cTGTCCAACTGAGCTGAGGGCg...................................... 363727_CGCCCTCAGCTCAGTTGGACAGAGCAA_1_1_0_3_5_1 MATURE 11 39.29 2 50.00 9 37.50 ttgctc 20
ctaTCCAACTGAGCTGAGGGCA...................................... 122059_TGCCCTCAGCTCAGTTGGATAGAGCAA_0_1_0_1_2_0 MATURE 4 14.29 1 25.00 3 12.50 ttgctcta 19
.taTCCAACTGAGCTGAGGGCg...................................... 399006_CGCCCTCAGCTCAGTTGGATA_0_0_1_1_1_0 MATURE 3 10.71 1 25.00 2 8.33 ta 18
ctaTCCAACTGAGCTGAGGGCg...................................... 179031_CGCCCTCAGCTCAGTTGGATAG_0_0_0_1_2_0 MATURE 3 10.71 0 0.00 3 12.50 cta 18
ctaTCCAACTGAGCTGAGGGCA...................................... 394815_TGCCCTCAGCTCAGTTGGATAGAGCAC_0_0_0_0_2_0 MATURE 2 7.14 0 0.00 2 8.33 gtgctcta 19
ctaTCCAACTGAGCTGAGGGCA...................................... 349211_TGCCCTCAGCTCAGTTGGATAGAGCTA_0_0_0_1_0_0 MATURE 1 3.57 0 0.00 1 4.17 tagctcta 19
cTGTCCAACTGAGCTGAGGGCg...................................... 220265_CGCCCTCAGCTCAGTTGGACAGAGCAC_0_0_0_0_1_0 MATURE 1 3.57 0 0.00 1 4.17 gtgctc 20
..aTCCAACTGAGCTGAGGGCg...................................... 394768_CGCCCTCAGCTCAGTTGGAT_0_0_0_0_1_0 MATURE 1 3.57 0 0.00 1 4.17 a 18
...TCCAACTGAGCTGAGGGCg...................................... 253747_CGCCCTCAGCTCAGTTGGA_0_0_0_0_1_0 MATURE 1 3.57 0 0.00 1 4.17 18
..tTCCAACTGAGCTGAGGGCg...................................... 273152_CGCCCTCAGCTCAGTTGGAA_0_0_0_0_1_0 MATURE 1 3.57 0 0.00 1 4.17 t 18
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28 4 24
(14.29) (85.71)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
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MATURE 4 24 28 100.00%
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4 24 28
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