[BEGIN]

================================================================================
NOTE:
Reference is presented 5'-->3' for consistency; sequence is - strand alignment.
================================================================================

REFERENCE HAIRPIN
***********************************************************************************************
ID                 : CLUSTER-367 (mmu-mir-3964)
DESCRIPTION        : CLUSTER-367
CHROMOSOME         : 15
SPAN               : 29643086 - 29643159
LENGTH             : 74
SEQUENCE           : GGCCCATTTAGTGCTTTCTACCTTATGAAGCTGTGAGTTCTCCTTGCTAGCTACATAACTTGGAAAGCAGGCCC
OVERHANG THRESHOLD : 40%
***********************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : CLUSTER-367
ACCID      : ACC1234
PARENT     : CLUSTER-367
CHROMOSOME : 15
START      : 29643086
STOP       : 29643159
OFFSET     : 7..27
SEQUENCE   : TTTAGTGCTTTCTACCTTATG
STRAND     : -
******************************



*** MATURE ***
__________________________________________________________________________
GGCCCATTTAGTGCTTTCTACCTTATGAAGCTGTGAGTTCTCCTTGCTAGCTACATAACTTGGAAAGCAGGCCC REF                  15                   29643086 - 29643159
      TTTAGTGCTTTCTACCTTATG                                                MATURE               15                   29643093 - 29643186  CLUSTER-367          -
__________________________________________________________________________

                                                                      -SEQ-                                         -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-
......TTTAGTGCTTTCTACtTTAT.................................................   121731_ATAAAGTAGAAAGCACTAAA_14_18_16_7_12_14       MATURE           81        33.33           48        31.58           33        36.26                      4A15
......agTAGTGCTTTCTACCTTAT.................................................     191948_ATAAGGTAGAAAGCACTACT_12_13_13_3_3_6       MATURE           50        20.58           38        25.00           12        13.19           ag           18
.......gTAGTGCTTTCTACCTTATGg...............................................        92259_CCATAAGGTAGAAAGCACTAC_9_6_5_9_7_5       MATURE           41        16.87           20        13.16           21        23.08            g           19
.........AGTGCTTTCTACCTTATGg...............................................          23120_CCATAAGGTAGAAAGCACT_5_4_3_0_3_5       MATURE           20         8.23           12         7.89            8         8.79                        18
.......gTAGTGCTTTCTACCTTAT.................................................          10461_ATAAGGTAGAAAGCACTAC_2_3_2_1_2_3       MATURE           13         5.35            7         4.61            6         6.59            g           18
........TAGTGCTTTCTACCTTATGg...............................................        344487_CCATAAGGTAGAAAGCACTA_6_2_2_0_0_2       MATURE           12         4.94           10         6.58            2         2.20                        19
.......TTAGTGCTTTCTACtTTATGA...............................................       302275_TCATAAAGTAGAAAGCACTAA_2_1_1_0_1_0       MATURE            5         2.06            4         2.63            1         1.10                      6A14
.......TTAGTGCTTTCTACCTTATGg...............................................       206719_CCATAAGGTAGAAAGCACTAA_2_0_1_0_1_0       MATURE            4         1.65            3         1.97            1         1.10                        20
......tgTAGTGCTTTCTACCTTAT.................................................        214447_ATAAGGTAGAAAGCACTACA_2_1_0_0_0_0       MATURE            3         1.23            3         1.97            0         0.00           tg           18
........TAGTGCTTTCTACCTTAT.................................................          111530_ATAAGGTAGAAAGCACTA_0_0_2_0_1_0       MATURE            3         1.23            2         1.32            1         1.10                        18
.........AGTGCTTTCTACCTTAT.................................................            46307_ATAAGGTAGAAAGCACT_0_1_1_0_0_0       MATURE            2         0.82            2         1.32            0         0.00                        17
.....tagTAGTGCTTTCTACCTTAT.................................................       212005_ATAAGGTAGAAAGCACTACTA_0_0_1_0_0_1       MATURE            2         0.82            1         0.66            1         1.10          tag           18
.......aTAGTGCTTTCTACCTTATGg...............................................       209523_CCATAAGGTAGAAAGCACTAT_1_0_0_0_0_1       MATURE            2         0.82            1         0.66            1         1.10            a           19
.....ATTTAGTGCTTTCTACtTTAT.................................................       285035_ATAAAGTAGAAAGCACTAAAT_0_0_0_1_0_0       MATURE            1         0.41            0         0.00            1         1.10                      4A16
......TTTAGTGCTTTCTACaTTAT.................................................        359876_ATAATGTAGAAAGCACTAAA_0_0_0_0_0_1       MATURE            1         0.41            0         0.00            1         1.10                      4T15
......aaTAGTGCTTTCTACCTTAT.................................................         90696_ATAAGGTAGAAAGCACTATT_0_0_1_0_0_0       MATURE            1         0.41            1         0.66            0         0.00           aa           18
.......aTAGTGCTTTCTACCTTAT.................................................         133249_ATAAGGTAGAAAGCACTAT_0_0_0_1_0_0       MATURE            1         0.41            0         0.00            1         1.10            a           18
.......ggAGTGCTTTCTACCTTATGg...............................................       178952_CCATAAGGTAGAAAGCACTCC_0_0_0_0_0_1       MATURE            1         0.41            0         0.00            1         1.10           gg           18
                                                                                                                                          ----------                ----------                ----------
                                                                                                                                                 243                       152                        91
                                                                                                                                                                       (62.55)                   (37.45)




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE             152              91             243         100.00%
                     ----------      ----------      ----------
                            152              91             243



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