[BEGIN]
================================================================================
NOTE:
Reference is presented 5'-->3' for consistency; sequence is - strand alignment.
================================================================================
REFERENCE HAIRPIN
***********************************************************************************************
ID : CLUSTER-367 (mmu-mir-3964)
DESCRIPTION : CLUSTER-367
CHROMOSOME : 15
SPAN : 29643086 - 29643159
LENGTH : 74
SEQUENCE : GGCCCATTTAGTGCTTTCTACCTTATGAAGCTGTGAGTTCTCCTTGCTAGCTACATAACTTGGAAAGCAGGCCC
OVERHANG THRESHOLD : 40%
***********************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : CLUSTER-367
ACCID : ACC1234
PARENT : CLUSTER-367
CHROMOSOME : 15
START : 29643086
STOP : 29643159
OFFSET : 7..27
SEQUENCE : TTTAGTGCTTTCTACCTTATG
STRAND : -
******************************
*** MATURE ***
__________________________________________________________________________
GGCCCATTTAGTGCTTTCTACCTTATGAAGCTGTGAGTTCTCCTTGCTAGCTACATAACTTGGAAAGCAGGCCC REF 15 29643086 - 29643159
TTTAGTGCTTTCTACCTTATG MATURE 15 29643093 - 29643186 CLUSTER-367 -
__________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
......TTTAGTGCTTTCTACtTTAT................................................. 121731_ATAAAGTAGAAAGCACTAAA_14_18_16_7_12_14 MATURE 81 33.33 48 31.58 33 36.26 4A15
......agTAGTGCTTTCTACCTTAT................................................. 191948_ATAAGGTAGAAAGCACTACT_12_13_13_3_3_6 MATURE 50 20.58 38 25.00 12 13.19 ag 18
.......gTAGTGCTTTCTACCTTATGg............................................... 92259_CCATAAGGTAGAAAGCACTAC_9_6_5_9_7_5 MATURE 41 16.87 20 13.16 21 23.08 g 19
.........AGTGCTTTCTACCTTATGg............................................... 23120_CCATAAGGTAGAAAGCACT_5_4_3_0_3_5 MATURE 20 8.23 12 7.89 8 8.79 18
.......gTAGTGCTTTCTACCTTAT................................................. 10461_ATAAGGTAGAAAGCACTAC_2_3_2_1_2_3 MATURE 13 5.35 7 4.61 6 6.59 g 18
........TAGTGCTTTCTACCTTATGg............................................... 344487_CCATAAGGTAGAAAGCACTA_6_2_2_0_0_2 MATURE 12 4.94 10 6.58 2 2.20 19
.......TTAGTGCTTTCTACtTTATGA............................................... 302275_TCATAAAGTAGAAAGCACTAA_2_1_1_0_1_0 MATURE 5 2.06 4 2.63 1 1.10 6A14
.......TTAGTGCTTTCTACCTTATGg............................................... 206719_CCATAAGGTAGAAAGCACTAA_2_0_1_0_1_0 MATURE 4 1.65 3 1.97 1 1.10 20
......tgTAGTGCTTTCTACCTTAT................................................. 214447_ATAAGGTAGAAAGCACTACA_2_1_0_0_0_0 MATURE 3 1.23 3 1.97 0 0.00 tg 18
........TAGTGCTTTCTACCTTAT................................................. 111530_ATAAGGTAGAAAGCACTA_0_0_2_0_1_0 MATURE 3 1.23 2 1.32 1 1.10 18
.........AGTGCTTTCTACCTTAT................................................. 46307_ATAAGGTAGAAAGCACT_0_1_1_0_0_0 MATURE 2 0.82 2 1.32 0 0.00 17
.....tagTAGTGCTTTCTACCTTAT................................................. 212005_ATAAGGTAGAAAGCACTACTA_0_0_1_0_0_1 MATURE 2 0.82 1 0.66 1 1.10 tag 18
.......aTAGTGCTTTCTACCTTATGg............................................... 209523_CCATAAGGTAGAAAGCACTAT_1_0_0_0_0_1 MATURE 2 0.82 1 0.66 1 1.10 a 19
.....ATTTAGTGCTTTCTACtTTAT................................................. 285035_ATAAAGTAGAAAGCACTAAAT_0_0_0_1_0_0 MATURE 1 0.41 0 0.00 1 1.10 4A16
......TTTAGTGCTTTCTACaTTAT................................................. 359876_ATAATGTAGAAAGCACTAAA_0_0_0_0_0_1 MATURE 1 0.41 0 0.00 1 1.10 4T15
......aaTAGTGCTTTCTACCTTAT................................................. 90696_ATAAGGTAGAAAGCACTATT_0_0_1_0_0_0 MATURE 1 0.41 1 0.66 0 0.00 aa 18
.......aTAGTGCTTTCTACCTTAT................................................. 133249_ATAAGGTAGAAAGCACTAT_0_0_0_1_0_0 MATURE 1 0.41 0 0.00 1 1.10 a 18
.......ggAGTGCTTTCTACCTTATGg............................................... 178952_CCATAAGGTAGAAAGCACTCC_0_0_0_0_0_1 MATURE 1 0.41 0 0.00 1 1.10 gg 18
---------- ---------- ----------
243 152 91
(62.55) (37.45)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 152 91 243 100.00%
---------- ---------- ----------
152 91 243
[END]