[BEGIN]
================================================================================
NOTE:
Reference is presented 5'-->3' for consistency; sequence is - strand alignment.
================================================================================
REFERENCE HAIRPIN
*************************************************************************************************
ID : CLUSTER-347 (mmu-mir-3096a)
DESCRIPTION : CLUSTER-347
CHROMOSOME : 5
SPAN : 23216806 - 23216881
LENGTH : 76
SEQUENCE : TGTTGGCCTCAGGTAAATCCTTTAACCCATCACAGCAGCGTATCCTGTCAGGTTAGAGTTCTCATCCTTGGCCAAG
OVERHANG THRESHOLD : 40%
*************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : CLUSTER-347
ACCID : ACC1234
PARENT : CLUSTER-347
CHROMOSOME : 5
START : 23216806
STOP : 23216881
OFFSET : 53..73
SEQUENCE : TTAGAGTTCTCATCCTTGGCC
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : CLUSTER-347*
ACCID : ACC1234
PARENT : CLUSTER-347
CHROMOSOME : 5
START : 23216806
STOP : 23216881
OFFSET : 4..22
SEQUENCE : TGGCCTCAGGTAAATCCTT
STRAND : -
******************************
*** MATURE ***
____________________________________________________________________________
TGTTGGCCTCAGGTAAATCCTTTAACCCATCACAGCAGCGTATCCTGTCAGGTTAGAGTTCTCATCCTTGGCCAAG REF 5 23216806 - 23216881
TTAGAGTTCTCATCCTTGGCC MATURE 5 23216859 - 23216954 CLUSTER-347 -
TGGCCTCAGGTAAATCCTT MATURESTAR 5 23216810 - 23216903 CLUSTER-347* -
____________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
......................................................AGAGTTCTCATCCTTGGC..... 222843_GCCAAGGATGAGAACTCT_0_0_1_39_44_64 MATURE 148 37.85 1 10.00 147 38.58 18
......................................................AGAGTTCTCATCCTTGGCC.... 200495_GGCCAAGGATGAGAACTCT_0_0_0_19_23_34 MATURE 76 19.44 0 0.00 76 19.95 19
.......................................................GAGTTCTCATCCTTGGC..... 117048_GCCAAGGATGAGAACTC_0_1_0_15_31_25 MATURE 72 18.41 1 10.00 71 18.64 17
.......................................................GAGTTCTCATCCTTGGCC.... 75811_GGCCAAGGATGAGAACTC_1_0_1_18_19_22 MATURE 61 15.60 2 20.00 59 15.49 18
........................................................AGTTCTCATCCTTGGCC.... 338915_GGCCAAGGATGAGAACT_3_0_0_2_4_5 MATURE 14 3.58 3 30.00 11 2.89 17
......................................................AGAGTTCTCATCCTTGG...... 412007_CCAAGGATGAGAACTCT_0_0_0_3_7_3 MATURE 13 3.32 0 0.00 13 3.41 17
...................................................tTTAGAGTTCTCATCCTTGGC..... 66608_GCCAAGGATGAGAACTCTAAA_0_0_0_0_0_2 MATURE 2 0.51 0 0.00 2 0.52 t 20
....................................................TTAGAGTTCTCATCCTTGGC..... 280848_GCCAAGGATGAGAACTCTAA_1_0_0_0_1_0 MATURE 2 0.51 1 10.00 1 0.26 20
....................................................agAGAGTTCTCATCCTTGGC..... 88268_GCCAAGGATGAGAACTCTCT_0_0_0_0_0_1 MATURE 1 0.26 0 0.00 1 0.26 ag 18
..................................................ttTTAGAGTTCTCATCCTTGGC..... 89804_GCCAAGGATGAGAACTCTAAAA_0_0_1_0_0_0 MATURE 1 0.26 1 10.00 0 0.00 tt 20
.....................................................TAGAGTTCTCATCCTTGGC..... 37989_GCCAAGGATGAGAACTCTA_0_1_0_0_0_0 MATURE 1 0.26 1 10.00 0 0.00 19
---------- ---------- ----------
391 10 381
(2.56) (97.44)
*** MATURESTAR ***
____________________________________________________________________________
TGTTGGCCTCAGGTAAATCCTTTAACCCATCACAGCAGCGTATCCTGTCAGGTTAGAGTTCTCATCCTTGGCCAAG REF 5 23216806 - 23216881
TTAGAGTTCTCATCCTTGGCC MATURE 5 23216859 - 23216954 CLUSTER-347 -
TGGCCTCAGGTAAATCCTT MATURESTAR 5 23216810 - 23216903 CLUSTER-347* -
____________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
....GGCCTCAGGTAAATCCT........................................................ 349024_AGGATTTACCTGAGGCC_0_0_0_0_1_0 MATURESTAR 1 33.33 0 0.00 1 50.00 17
...TGGCCTCAGGTAAATCCTT....................................................... 27169_AAGGATTTACCTGAGGCCA_0_0_0_0_1_0 MATURESTAR 1 33.33 0 0.00 1 50.00 19
...TGGCCTCAGGTAAATCCTTT...................................................... 85408_AAAGGATTTACCTGAGGCCA_0_0_1_0_0_0 MATURESTAR 1 33.33 1 100.00 0 0.00 20
---------- ---------- ----------
3 1 2
(33.33) (66.67)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 10 381 391 99.24%
MATURESTAR 1 2 3 0.76%
---------- ---------- ----------
11 383 394
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