[BEGIN]
================================================================================
NOTE:
Reference is presented 5'-->3' for consistency; sequence is - strand alignment.
================================================================================
REFERENCE HAIRPIN
********************************************************************************************
ID : CLUSTER-333 (mmu-mir-3963)
DESCRIPTION : CLUSTER-333
CHROMOSOME : 3
SPAN : 150686756 - 150686826
LENGTH : 71
SEQUENCE : GGAAAATATTCCACCTAAAACCTGTAAGATATTAAACAATATCACCAGTGTCAGAAGTGGGATACATCCCA
OVERHANG THRESHOLD : 40%
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TARGET
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CATEGORY : MATURE
ID : CLUSTER-333
ACCID : ACC1234
PARENT : CLUSTER-333
CHROMOSOME : 3
START : 150686756
STOP : 150686826
OFFSET : 48..66
SEQUENCE : GTGTCAGAAGTGGGATACA
STRAND : -
******************************
*** MATURE ***
_______________________________________________________________________
GGAAAATATTCCACCTAAAACCTGTAAGATATTAAACAATATCACCAGTGTCAGAAGTGGGATACATCCCA REF 3 150686756 - 150686826
GTGTCAGAAGTGGGATACA MATURE 3 150686804 - 150686892 CLUSTER-333 -
_______________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.............................................tgGTGTCAGAAGTGGGATACg...... 139329_CGTATCCCACTTCTGACACCA_77_74_48_66_69_65 MATURE 399 94.10 199 93.87 200 94.34 tg 18
.............................................tgGTGTCAGAAGTGGGATAC....... 319588_GTATCCCACTTCTGACACCA_2_4_2_0_0_2 MATURE 10 2.36 8 3.77 2 0.94 tg 18
..............................................gGTGTCAGAAGTGGGATACg...... 297339_CGTATCCCACTTCTGACACC_1_1_0_2_3_1 MATURE 8 1.89 2 0.94 6 2.83 g 18
.............................................ggGTGTCAGAAGTGGGATACg...... 25199_CGTATCCCACTTCTGACACCC_0_0_0_0_2_0 MATURE 2 0.47 0 0.00 2 0.94 gg 18
.............................................tgGTGTCAGAAGTGGGATACA...... 316097_TGTATCCCACTTCTGACACCA_0_0_0_0_1_0 MATURE 1 0.24 0 0.00 1 0.47 tg 19
...............................................GTGTCAGAAGTGGGATACg...... 147984_CGTATCCCACTTCTGACAC_1_0_0_0_0_0 MATURE 1 0.24 1 0.47 0 0.00 18
.............................................agGTGTCAGAAGTGGGATACg...... 220083_CGTATCCCACTTCTGACACCT_0_0_1_0_0_0 MATURE 1 0.24 1 0.47 0 0.00 ag 18
.............................................cgGTGTCAGAAGTGGGATACg...... 55179_CGTATCCCACTTCTGACACCG_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.47 cg 18
.............................................ttGTGTCAGAAGTGGGATACg...... 236768_CGTATCCCACTTCTGACACAA_0_1_0_0_0_0 MATURE 1 0.24 1 0.47 0 0.00 tt 18
---------- ---------- ----------
424 212 212
(50.00) (50.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 212 212 424 100.00%
---------- ---------- ----------
212 212 424
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