[BEGIN]
================================================================================
NOTE:
Reference is presented 5'-->3' for consistency; sequence is - strand alignment.
================================================================================
REFERENCE HAIRPIN
*****************************************************************************************************
ID : CLUSTER-320 (mmu-mir-1843a)
DESCRIPTION : CLUSTER-320
CHROMOSOME : 12
SPAN : 81492592 - 81492671
LENGTH : 80
SEQUENCE : AGTCTAAGGTTGTATGGAGGTGAACGATCAGACTCAGCCAGCTATTCTAAGTCAGACAGAGACCTCCATATTCATGTAGG
OVERHANG THRESHOLD : 40%
*****************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : CLUSTER-320
ACCID : ACC1234
PARENT : CLUSTER-320
CHROMOSOME : 12
START : 81492592
STOP : 81492671
OFFSET : 49..70
SEQUENCE : AAGTCAGACAGAGACCTCCATA
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : CLUSTER-320*
ACCID : ACC1234
PARENT : CLUSTER-320
CHROMOSOME : 12
START : 81492592
STOP : 81492671
OFFSET : 12..31
SEQUENCE : GTATGGAGGTGAACGATCAG
STRAND : -
******************************
*** MATURE ***
________________________________________________________________________________
AGTCTAAGGTTGTATGGAGGTGAACGATCAGACTCAGCCAGCTATTCTAAGTCAGACAGAGACCTCCATATTCATGTAGG REF 12 81492592 - 81492671
AAGTCAGACAGAGACCTCCATA MATURE 12 81492641 - 81492741 CLUSTER-320 -
GTATGGAGGTGAACGATCAG MATURESTAR 12 81492604 - 81492702 CLUSTER-320* -
________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.................................................AGTCAGACAGAGACCTCCAT............ 327900_ATGGAGGTCTCTGTCTGACT_20_27_16_7_11_10 MATURE 91 23.45 63 24.05 28 22.22 20
...............................................aAAGTCAGACAGAGACCTCCAT............ 192969_ATGGAGGTCTCTGTCTGACTTT_28_19_13_7_11_13 MATURE 91 23.45 60 22.90 31 24.60 a 21
................................................AAGTCAGACAGAGACCTCCAT............ 339998_ATGGAGGTCTCTGTCTGACTT_10_14_9_5_5_8 MATURE 51 13.14 33 12.60 18 14.29 21
..................................................GTCAGACAGAGACCTCCAT............ 393062_ATGGAGGTCTCTGTCTGAC_7_4_4_4_3_0 MATURE 22 5.67 15 5.73 7 5.56 19
...............................................TAAGTCAGACAGAGACCTCCAT............ 375321_ATGGAGGTCTCTGTCTGACTTA_7_6_7_0_0_2 MATURE 22 5.67 20 7.63 2 1.59 22
...................................................TCAGACAGAGACCTCCAT............ 295207_ATGGAGGTCTCTGTCTGA_5_7_5_0_2_1 MATURE 20 5.15 17 6.49 3 2.38 18
.................................................tGTCAGACAGAGACCTCCAT............ 115534_ATGGAGGTCTCTGTCTGACA_1_2_2_0_2_0 MATURE 7 1.80 5 1.91 2 1.59 t 19
...............................................atAGTCAGACAGAGACCTCCAT............ 277133_ATGGAGGTCTCTGTCTGACTAT_0_1_2_1_0_0 MATURE 4 1.03 3 1.15 1 0.79 at 20
..................................................aTCAGACAGAGACCTCCAT............ 247181_ATGGAGGTCTCTGTCTGAT_0_1_0_1_1_1 MATURE 4 1.03 1 0.38 3 2.38 a 18
..............................................aTAAGTCAGACAGAGACCTCCAT............ 248064_ATGGAGGTCTCTGTCTGACTTAT_0_0_1_1_1_1 MATURE 4 1.03 1 0.38 3 2.38 a 22
..............................................aaAAGTCAGACAGAGACCTCCAT............ 180918_ATGGAGGTCTCTGTCTGACTTTT_1_1_1_1_0_0 MATURE 4 1.03 3 1.15 1 0.79 aa 21
..............................................tTAAGTCAGACAGAGACCTCCAT............ 285495_ATGGAGGTCTCTGTCTGACTTAA_2_0_0_0_1_0 MATURE 3 0.77 2 0.76 1 0.79 t 22
................................................tAGTCAGACAGAGACCTCCAT............ 24522_ATGGAGGTCTCTGTCTGACTA_1_1_1_0_0_0 MATURE 3 0.77 3 1.15 0 0.00 t 20
...............................................cAAGTCAGACAGAGACCTCCAT............ 60338_ATGGAGGTCTCTGTCTGACTTG_0_1_1_0_1_0 MATURE 3 0.77 2 0.76 1 0.79 c 21
..............................................acAAGTCAGACAGAGACCTCCAT............ 84154_ATGGAGGTCTCTGTCTGACTTGT_0_2_0_1_0_0 MATURE 3 0.77 2 0.76 1 0.79 ac 21
.................................................ttTCAGACAGAGACCTCCAT............ 82857_ATGGAGGTCTCTGTCTGAAA_2_0_1_0_0_0 MATURE 3 0.77 3 1.15 0 0.00 tt 18
..................................................tTCAGACAGAGACCTCCAT............ 201670_ATGGAGGTCTCTGTCTGAA_0_0_0_1_1_1 MATURE 3 0.77 0 0.00 3 2.38 t 18
...............................................ttAGTCAGACAGAGACCTCCAT............ 121516_ATGGAGGTCTCTGTCTGACTAA_0_2_0_1_0_0 MATURE 3 0.77 2 0.76 1 0.79 tt 20
..............................................taAAGTCAGACAGAGACCTCCAT............ 114176_ATGGAGGTCTCTGTCTGACTTTA_0_0_1_0_1_1 MATURE 3 0.77 1 0.38 2 1.59 ta 21
................................................AAGTaAGACAGAGACCTCCAT............ 192181_ATGGAGGTCTCTGTCTTACTT_0_2_0_0_0_0 MATURE 2 0.52 2 0.76 0 0.00 16T4
................................................AAGTCAGACAGAGACCTCgAT............ 152452_ATCGAGGTCTCTGTCTGACTT_0_0_0_2_0_0 MATURE 2 0.52 0 0.00 2 1.59 2C18
..................................................GTCAGACAGAGACCTCCATg........... 276668_CATGGAGGTCTCTGTCTGAC_1_0_0_0_0_1 MATURE 2 0.52 1 0.38 1 0.79 19
................................................atGTCAGACAGAGACCTCCAT............ 241036_ATGGAGGTCTCTGTCTGACAT_0_1_0_0_0_1 MATURE 2 0.52 1 0.38 1 0.79 at 19
.................................................AGTaAGACAGAGACCTCCAT............ 109_ATGGAGGTCTCTGTCTTACT_0_1_0_0_1_0 MATURE 2 0.52 1 0.38 1 0.79 16T3
................................................AAaTCAGACAGAGACCTCCAT............ 308064_ATGGAGGTCTCTGTCTGATTT_0_1_0_0_1_0 MATURE 2 0.52 1 0.38 1 0.79 18T2
...............................................aAAGTCAGAtAGAGACCTCCAT............ 20917_ATGGAGGTCTCTATCTGACTTT_1_0_0_0_0_0 MATURE 1 0.26 1 0.38 0 0.00 a 12A8
.................................................AGTCAGACAGAGACaTCCAT............ 118941_ATGGATGTCTCTGTCTGACT_0_1_0_0_0_0 MATURE 1 0.26 1 0.38 0 0.00 5T14
...............................................aAAGTCAGACAGAGACCTCC.............. 201253_GGAGGTCTCTGTCTGACTTT_0_0_1_0_0_0 MATURE 1 0.26 1 0.38 0 0.00 a 19
................................................AAGaCAGACAGAGACCTCCAT............ 370944_ATGGAGGTCTCTGTCTGTCTT_0_0_1_0_0_0 MATURE 1 0.26 1 0.38 0 0.00 17T3
..............................................caAAGTCAGACAGAGACCTCCAT............ 203059_ATGGAGGTCTCTGTCTGACTTTG_0_0_0_0_0_1 MATURE 1 0.26 0 0.00 1 0.79 ca 21
...............................................aAAGTCAGACAGAtACCTCCAT............ 162572_ATGGAGGTATCTGTCTGACTTT_0_1_0_0_0_0 MATURE 1 0.26 1 0.38 0 0.00 a 8A12
..............................................aTAAGTaAGACAGAGACCTCCAT............ 257572_ATGGAGGTCTCTGTCTTACTTAT_0_1_0_0_0_0 MATURE 1 0.26 1 0.38 0 0.00 a 16T5
................................................AAGgCAGACAGAGACCTCCAT............ 400562_ATGGAGGTCTCTGTCTGCCTT_0_0_0_0_1_0 MATURE 1 0.26 0 0.00 1 0.79 17C3
...............................................atgGTCAGACAGAGACCTCCAT............ 170662_ATGGAGGTCTCTGTCTGACCAT_0_0_0_0_1_0 MATURE 1 0.26 0 0.00 1 0.79 atg 19
.................................................atTCAGACAGAGACCTCCAT............ 192117_ATGGAGGTCTCTGTCTGAAT_0_0_0_1_0_0 MATURE 1 0.26 0 0.00 1 0.79 at 18
...............................................tcAGTCAGACAGAGACCTCCAT............ 405875_ATGGAGGTCTCTGTCTGACTGA_1_0_0_0_0_0 MATURE 1 0.26 1 0.38 0 0.00 tc 20
.................................................AGTCAtACAGAGACCTCCAT............ 372676_ATGGAGGTCTCTGTATGACT_0_0_0_0_0_1 MATURE 1 0.26 0 0.00 1 0.79 14A5
...................................................TCAGACAGAGACCTCCATAT.......... 48051_ATATGGAGGTCTCTGTCTGA_0_0_0_0_1_0 MATURE 1 0.26 0 0.00 1 0.79 20
...............................................tttGTCAGACAGAGACCTCCAT............ 106563_ATGGAGGTCTCTGTCTGACAAA_0_0_0_0_1_0 MATURE 1 0.26 0 0.00 1 0.79 ttt 19
................................................AAGTCAtACAGAGACCTCCAT............ 103453_ATGGAGGTCTCTGTATGACTT_0_0_1_0_0_0 MATURE 1 0.26 1 0.38 0 0.00 14A6
.................................................AGTCAGACAGAGACCTaCAT............ 273458_ATGTAGGTCTCTGTCTGACT_0_1_0_0_0_0 MATURE 1 0.26 1 0.38 0 0.00 3T16
...............................................TAAGTCAGAgAGAGACCTCCAT............ 242494_ATGGAGGTCTCTCTCTGACTTA_0_0_1_0_0_0 MATURE 1 0.26 1 0.38 0 0.00 12C9
.................................................AGTCAGgCAGAGACCTCCAT............ 333580_ATGGAGGTCTCTGCCTGACT_0_1_0_0_0_0 MATURE 1 0.26 1 0.38 0 0.00 13C6
...............................................aAAGTCgGACAGAGACCTCCAT............ 395861_ATGGAGGTCTCTGTCCGACTTT_0_0_1_0_0_0 MATURE 1 0.26 1 0.38 0 0.00 a 15C5
..............................................aTAAGTCAtACAGAGACCTCCAT............ 407624_ATGGAGGTCTCTGTATGACTTAT_1_0_0_0_0_0 MATURE 1 0.26 1 0.38 0 0.00 a 14A7
..............................................aTAAGTCAGACAGAtACCTCCAT............ 35054_ATGGAGGTATCTGTCTGACTTAT_0_0_1_0_0_0 MATURE 1 0.26 1 0.38 0 0.00 a 8A13
.................................................AGaCAGACAGAGACCTCCAT............ 22828_ATGGAGGTCTCTGTCTGTCT_0_1_0_0_0_0 MATURE 1 0.26 1 0.38 0 0.00 17T2
................................................AAGTCAGACAGAGAgCTCCAT............ 231979_ATGGAGCTCTCTGTCTGACTT_0_0_0_0_1_0 MATURE 1 0.26 0 0.00 1 0.79 6C14
.................................................AGTCAGACAGAaACCTCCAT............ 1757_ATGGAGGTTTCTGTCTGACT_0_0_0_0_1_0 MATURE 1 0.26 0 0.00 1 0.79 8T11
.................................................AGTCAcACAGAGACCTCCAT............ 117807_ATGGAGGTCTCTGTGTGACT_1_0_0_0_0_0 MATURE 1 0.26 1 0.38 0 0.00 14G5
.................................................AGcCAGACAGAGACCTCCAT............ 298494_ATGGAGGTCTCTGTCTGGCT_0_0_0_0_0_1 MATURE 1 0.26 0 0.00 1 0.79 17G2
.................................................cGTCAGACAGAGACCTCCAT............ 404760_ATGGAGGTCTCTGTCTGACG_0_1_0_0_0_0 MATURE 1 0.26 1 0.38 0 0.00 c 19
...............................................aAAGcCAGACAGAGACCTCCAT............ 124718_ATGGAGGTCTCTGTCTGGCTTT_0_0_0_0_0_1 MATURE 1 0.26 0 0.00 1 0.79 a 17G3
...............................................aAAGaCAGACAGAGACCTCCAT............ 383787_ATGGAGGTCTCTGTCTGTCTTT_0_0_0_0_1_0 MATURE 1 0.26 0 0.00 1 0.79 a 17T3
...............................................aAAGTCAGcCAGAGACCTCCAT............ 321550_ATGGAGGTCTCTGGCTGACTTT_0_0_1_0_0_0 MATURE 1 0.26 1 0.38 0 0.00 a 13G7
...............................................aAAGTCAGACAGAGACCcCCAT............ 290515_ATGGGGGTCTCTGTCTGACTTT_0_0_1_0_0_0 MATURE 1 0.26 1 0.38 0 0.00 a 4G16
...............................................aAAGTCAGACAGgGACCTCCAT............ 361865_ATGGAGGTCCCTGTCTGACTTT_0_1_0_0_0_0 MATURE 1 0.26 1 0.38 0 0.00 a 9C11
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388 262 126
(67.53) (32.47)
*** MATURESTAR ***
________________________________________________________________________________
AGTCTAAGGTTGTATGGAGGTGAACGATCAGACTCAGCCAGCTATTCTAAGTCAGACAGAGACCTCCATATTCATGTAGG REF 12 81492592 - 81492671
AAGTCAGACAGAGACCTCCATA MATURE 12 81492641 - 81492741 CLUSTER-320 -
GTATGGAGGTGAACGATCAG MATURESTAR 12 81492604 - 81492702 CLUSTER-320* -
________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..........TGTATGGAGGTGAACGATCAG.................................................. 90084_CTGATCGTTCACCTCCATACA_2_3_2_1_1_3 MATURESTAR 12 24.00 7 24.14 5 23.81 21
...........GTATGGAGGTGAACGATCAG.................................................. 4064_CTGATCGTTCACCTCCATAC_1_5_2_2_0_1 MATURESTAR 11 22.00 8 27.59 3 14.29 20
.............ATGGAGGTGAACGATCAG.................................................. 52216_CTGATCGTTCACCTCCAT_1_0_0_0_4_4 MATURESTAR 9 18.00 1 3.45 8 38.10 18
............TATGGAGGTGAACGATCAG.................................................. 292959_CTGATCGTTCACCTCCATA_2_0_1_1_1_0 MATURESTAR 5 10.00 3 10.34 2 9.52 19
..........aGTATGGAGGTGAACGATCAG.................................................. 261292_CTGATCGTTCACCTCCATACT_1_1_2_0_0_0 MATURESTAR 4 8.00 4 13.79 0 0.00 a 20
.........aTGTATGGAGGTGAACGATCAG.................................................. 408376_CTGATCGTTCACCTCCATACAT_1_0_0_0_0_1 MATURESTAR 2 4.00 1 3.45 1 4.76 a 21
...........GTATGGAGGTGAAaGATCAG.................................................. 395120_CTGATCTTTCACCTCCATAC_0_1_0_0_0_0 MATURESTAR 1 2.00 1 3.45 0 0.00 6T13
..........TGTATGGAGGTGAAaGATCAG.................................................. 45848_CTGATCTTTCACCTCCATACA_1_0_0_0_0_0 MATURESTAR 1 2.00 1 3.45 0 0.00 6T14
...........tTATGGAGGTGAACGATCAG.................................................. 89667_CTGATCGTTCACCTCCATAA_0_1_0_0_0_0 MATURESTAR 1 2.00 1 3.45 0 0.00 t 19
.........aaGTATGGAGGTGAACGATCAG.................................................. 189452_CTGATCGTTCACCTCCATACTT_0_0_0_0_1_0 MATURESTAR 1 2.00 0 0.00 1 4.76 aa 20
...........GTATGGgGGTGAACGATCAG.................................................. 124728_CTGATCGTTCACCCCCATAC_0_1_0_0_0_0 MATURESTAR 1 2.00 1 3.45 0 0.00 13C6
...........GTATGGAGGgGAACGATCAG.................................................. 386176_CTGATCGTTCCCCTCCATAC_1_0_0_0_0_0 MATURESTAR 1 2.00 1 3.45 0 0.00 10C9
..............TGGAGGTGAACGATCAGACT............................................... 202572_AGTCTGATCGTTCACCTCCA_0_0_0_1_0_0 MATURESTAR 1 2.00 0 0.00 1 4.76 20
---------- ---------- ----------
50 29 21
(58.00) (42.00)
*** OTHER ***
________________________________________________________________________________
AGTCTAAGGTTGTATGGAGGTGAACGATCAGACTCAGCCAGCTATTCTAAGTCAGACAGAGACCTCCATATTCATGTAGG REF 12 81492592 - 81492671
AAGTCAGACAGAGACCTCCATA MATURE 12 81492641 - 81492741 CLUSTER-320 -
GTATGGAGGTGAACGATCAG MATURESTAR 12 81492604 - 81492702 CLUSTER-320* -
________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..............................GACTCAGCCAGCTATTCTA................................ 395824_TAGAATAGCTGGCTGAGTC_0_0_0_1_0_0 OTHER 1 50.00 0 0 1 50.00 19
...............................ACTCAGCCAGCTATTCTAAGTC............................ 35444_GACTTAGAATAGCTGGCTGAGT_0_0_0_0_0_1 OTHER 1 50.00 0 0 1 50.00 22
---------- ---------- ----------
2 0 2
(0.00) (100.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 262 126 388 88.18%
MATURESTAR 29 21 50 11.36%
OTHER 0 2 2 0.45%
---------- ---------- ----------
291 149 440
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