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NOTE:
Reference is presented 5'-->3' for consistency; sequence is - strand alignment.
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REFERENCE HAIRPIN
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ID : CLUSTER-187 (mmu-mir-28c)
DESCRIPTION : CLUSTER-187
CHROMOSOME : 15
SPAN : 53445760 - 53445834
LENGTH : 75
SEQUENCE : GCTGCTTGTGTTCAATAGACTGTGAGCTCCTCAAGGGTAGGGATCATATCTCATTTGTCTTTGTAACTGCAGTGA
OVERHANG THRESHOLD : 40%
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TARGET
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CATEGORY : MATURE
ID : CLUSTER-187
ACCID : ACC1234
PARENT : CLUSTER-187
CHROMOSOME : 15
START : 53445760
STOP : 53445834
OFFSET : 11..31
SEQUENCE : TTCAATAGACTGTGAGCTCCT
STRAND : -
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*** MATURE ***
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GCTGCTTGTGTTCAATAGACTGTGAGCTCCTCAAGGGTAGGGATCATATCTCATTTGTCTTTGTAACTGCAGTGA REF 15 53445760 - 53445834
TTCAATAGACTGTGAGCTCCT MATURE 15 53445771 - 53445865 CLUSTER-187 -
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-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...........TCAATAGACTGTGAGCTCCT............................................. 287842_AGGAGCTCACAGTCTATTGA_102_126_106_25_59_53 MATURE 471 47.43 334 51.15 137 40.29 20
............CAATAGACTGTGAGCTCCT............................................. 266820_AGGAGCTCACAGTCTATTG_22_30_32_15_16_10 MATURE 125 12.59 84 12.86 41 12.06 19
..........ctaAATAGACTGTGAGCTCCT............................................. 128397_AGGAGCTCACAGTCTATTTAG_10_17_15_10_13_18 MATURE 83 8.36 42 6.43 41 12.06 cta 18
...........taAATAGACTGTGAGCTCCT............................................. 226607_AGGAGCTCACAGTCTATTTA_5_14_6_3_8_11 MATURE 47 4.73 25 3.83 22 6.47 ta 18
..........TTCAATAGACTGTGAGCTCCT............................................. 381745_AGGAGCTCACAGTCTATTGAA_9_11_10_1_5_6 MATURE 42 4.23 30 4.59 12 3.53 21
...........aCAATAGACTGTGAGCTCCT............................................. 238927_AGGAGCTCACAGTCTATTGT_10_6_5_4_4_3 MATURE 32 3.22 21 3.22 11 3.24 a 19
.............AATAGACTGTGAGCTCCT............................................. 210829_AGGAGCTCACAGTCTATT_10_5_2_1_2_6 MATURE 26 2.62 17 2.60 9 2.65 18
..........aTCAATAGACTGTGAGCTCCT............................................. 49019_AGGAGCTCACAGTCTATTGAT_6_3_4_4_3_4 MATURE 24 2.42 13 1.99 11 3.24 a 20
.........tTTCAATAGACTGTGAGCTCCT............................................. 185491_AGGAGCTCACAGTCTATTGAAA_3_1_2_1_2_2 MATURE 11 1.11 6 0.92 5 1.47 t 21
............tAATAGACTGTGAGCTCCT............................................. 202941_AGGAGCTCACAGTCTATTA_3_1_1_1_0_3 MATURE 9 0.91 5 0.77 4 1.18 t 18
............aAATAGACTGTGAGCTCCT............................................. 290008_AGGAGCTCACAGTCTATTT_2_1_0_1_3_2 MATURE 9 0.91 3 0.46 6 1.76 a 18
.........aaTCAATAGACTGTGAGCTCCT............................................. 196566_AGGAGCTCACAGTCTATTGATT_3_0_0_1_2_1 MATURE 7 0.70 3 0.46 4 1.18 aa 20
..........ataAATAGACTGTGAGCTCCT............................................. 159083_AGGAGCTCACAGTCTATTTAT_1_0_1_0_3_2 MATURE 7 0.70 2 0.31 5 1.47 ata 18
.........aTTCAATAGACTGTGAGCTCCT............................................. 148914_AGGAGCTCACAGTCTATTGAAT_2_2_0_2_0_0 MATURE 6 0.60 4 0.61 2 0.59 a 21
..........TTtAATAGACTGTGAGCTCCT............................................. 357200_AGGAGCTCACAGTCTATTAAA_1_1_2_0_0_0 MATURE 4 0.40 4 0.61 0 0.00 18A2
..........taCAATAGACTGTGAGCTCCT............................................. 33331_AGGAGCTCACAGTCTATTGTA_0_0_2_0_0_2 MATURE 4 0.40 2 0.31 2 0.59 ta 19
.........taTCAATAGACTGTGAGCTCCT............................................. 98987_AGGAGCTCACAGTCTATTGATA_1_1_1_1_0_0 MATURE 4 0.40 3 0.46 1 0.29 ta 20
...........ttAATAGACTGTGAGCTCCT............................................. 385937_AGGAGCTCACAGTCTATTAA_1_1_1_1_0_0 MATURE 4 0.40 3 0.46 1 0.29 tt 18
..............ATAGACTGTGAGCTCCT............................................. 149989_AGGAGCTCACAGTCTAT_1_0_0_2_0_1 MATURE 4 0.40 1 0.15 3 0.88 17
..........caCAATAGACTGTGAGCTCCT............................................. 360313_AGGAGCTCACAGTCTATTGTG_0_1_1_1_1_0 MATURE 4 0.40 2 0.31 2 0.59 ca 19
...........gCAATAGACTGTGAGCTCCT............................................. 121555_AGGAGCTCACAGTCTATTGC_2_1_1_0_0_0 MATURE 4 0.40 4 0.61 0 0.00 g 19
...........TCAATtGACTGTGAGCTCCT............................................. 279817_AGGAGCTCACAGTCAATTGA_3_0_0_0_0_0 MATURE 3 0.30 3 0.46 0 0.00 14A5
.........cTTCAATAGACTGTGAGCTCCT............................................. 247279_AGGAGCTCACAGTCTATTGAAG_1_0_0_0_1_1 MATURE 3 0.30 1 0.15 2 0.59 c 21
..........TTaAATAGACTGTGAGCTCCT............................................. 58059_AGGAGCTCACAGTCTATTTAA_0_1_2_0_0_0 MATURE 3 0.30 3 0.46 0 0.00 18T2
.........tctaAATAGACTGTGAGCTCCT............................................. 277849_AGGAGCTCACAGTCTATTTAGA_0_0_1_0_1_1 MATURE 3 0.30 1 0.15 2 0.59 tcta 18
...........TCAATAGACTGTGAGCTCCg............................................. 345458_CGGAGCTCACAGTCTATTGA_0_1_0_1_1_0 MATURE 3 0.30 1 0.15 2 0.59 19
..........gTCAATAGACTGTGAGCTCCT............................................. 111740_AGGAGCTCACAGTCTATTGAC_0_0_1_1_1_0 MATURE 3 0.30 1 0.15 2 0.59 g 20
...........TCAATAtACTGTGAGCTCCT............................................. 352817_AGGAGCTCACAGTATATTGA_1_0_1_0_0_1 MATURE 3 0.30 2 0.31 1 0.29 13A6
...........TCAATAGACTGTGAGCcCCT............................................. 222971_AGGGGCTCACAGTCTATTGA_2_0_0_0_0_0 MATURE 2 0.20 2 0.31 0 0.00 3G16
...........aaAATAGACTGTGAGCTCCT............................................. 261467_AGGAGCTCACAGTCTATTTT_0_0_1_1_0_0 MATURE 2 0.20 1 0.15 1 0.29 aa 18
..........cgaAATAGACTGTGAGCTCCT............................................. 85445_AGGAGCTCACAGTCTATTTCG_1_1_0_0_0_0 MATURE 2 0.20 2 0.31 0 0.00 cga 18
...........TCAATAGAgTGTGAGCTCCT............................................. 278768_AGGAGCTCACACTCTATTGA_0_1_0_0_0_1 MATURE 2 0.20 1 0.15 1 0.29 11C8
...........TCAATAGACTGTGAGCTCt.............................................. 303901_AGAGCTCACAGTCTATTGA_0_1_0_0_1_0 MATURE 2 0.20 1 0.15 1 0.29 18
..........cgCAATAGACTGTGAGCTCCT............................................. 182041_AGGAGCTCACAGTCTATTGCG_0_0_0_0_1_1 MATURE 2 0.20 0 0.00 2 0.59 cg 19
.........tTTaAATAGACTGTGAGCTCCT............................................. 183459_AGGAGCTCACAGTCTATTTAAA_0_1_1_0_0_0 MATURE 2 0.20 2 0.31 0 0.00 t 18T2
........ttTTCAATAGACTGTGAGCTCCT............................................. 265645_AGGAGCTCACAGTCTATTGAAAA_1_0_1_0_0_0 MATURE 2 0.20 2 0.31 0 0.00 tt 21
...........cCAATAGACTGTGAGCTCCT............................................. 194950_AGGAGCTCACAGTCTATTGG_0_1_0_0_0_1 MATURE 2 0.20 1 0.15 1 0.29 c 19
.........tataAATAGACTGTGAGCTCCT............................................. 6926_AGGAGCTCACAGTCTATTTATA_1_1_0_0_0_0 MATURE 2 0.20 2 0.31 0 0.00 tata 18
...........TCAATAGACTGTGgGCTCCT............................................. 12857_AGGAGCCCACAGTCTATTGA_1_0_0_0_1_0 MATURE 2 0.20 1 0.15 1 0.29 6C13
...........atAATAGACTGTGAGCTCCT............................................. 141048_AGGAGCTCACAGTCTATTAT_0_0_1_0_0_0 MATURE 1 0.10 1 0.15 0 0.00 at 18
.......tttTTaAATAGACTGTGAGCTCCT............................................. 4260_AGGAGCTCACAGTCTATTTAAAAA_0_0_1_0_0_0 MATURE 1 0.10 1 0.15 0 0.00 ttt 18T2
...........gaAATAGACTGTGAGCTCCT............................................. 218737_AGGAGCTCACAGTCTATTTC_0_1_0_0_0_0 MATURE 1 0.10 1 0.15 0 0.00 ga 18
..........TTCAATAGACTGaGAGCTCCT............................................. 36838_AGGAGCTCTCAGTCTATTGAA_0_0_0_0_0_1 MATURE 1 0.10 0 0.00 1 0.29 8T12
...........TCAAaAGACTGTGAGCTCCT............................................. 65494_AGGAGCTCACAGTCTTTTGA_0_0_1_0_0_0 MATURE 1 0.10 1 0.15 0 0.00 15T4
..........cttAATAGACTGTGAGCTCCT............................................. 340527_AGGAGCTCACAGTCTATTAAG_0_0_0_0_1_0 MATURE 1 0.10 0 0.00 1 0.29 ctt 18
.........ataCAATAGACTGTGAGCTCCT............................................. 195088_AGGAGCTCACAGTCTATTGTAT_0_1_0_0_0_0 MATURE 1 0.10 1 0.15 0 0.00 ata 19
..........tctAATAGACTGTGAGCTCCT............................................. 387622_AGGAGCTCACAGTCTATTAGA_1_0_0_0_0_0 MATURE 1 0.10 1 0.15 0 0.00 tct 18
.........ttaCAATAGACTGTGAGCTCCT............................................. 8487_AGGAGCTCACAGTCTATTGTAA_0_0_1_0_0_0 MATURE 1 0.10 1 0.15 0 0.00 tta 19
.........tTTCAATtGACTGTGAGCTCCT............................................. 358157_AGGAGCTCACAGTCAATTGAAA_1_0_0_0_0_0 MATURE 1 0.10 1 0.15 0 0.00 t 14A6
...........TCAATAGgCTGTGAGCTCCT............................................. 411581_AGGAGCTCACAGCCTATTGA_0_0_0_1_0_0 MATURE 1 0.10 0 0.00 1 0.29 12C7
..........TTCAATAGACTGTtAGCTCCT............................................. 20261_AGGAGCTAACAGTCTATTGAA_0_0_1_0_0_0 MATURE 1 0.10 1 0.15 0 0.00 7A13
...........TCAATAGACTGTGAtCTCCT............................................. 102590_AGGAGATCACAGTCTATTGA_0_1_0_0_0_0 MATURE 1 0.10 1 0.15 0 0.00 5A14
........aaaTCAATAGACTGTGAGCTCCT............................................. 100982_AGGAGCTCACAGTCTATTGATTT_0_0_0_0_1_0 MATURE 1 0.10 0 0.00 1 0.29 aaa 20
............CAATAGACTGTGAGCTCCTt............................................ 245426_AAGGAGCTCACAGTCTATTG_0_0_0_0_1_0 MATURE 1 0.10 0 0.00 1 0.29 19
.......aaaTTCAATAGACTGTGAGCTCCT............................................. 334500_AGGAGCTCACAGTCTATTGAATTT_0_1_0_0_0_0 MATURE 1 0.10 1 0.15 0 0.00 aaa 21
..........agCAATAGACTGTGAGCTCCT............................................. 371574_AGGAGCTCACAGTCTATTGCT_0_0_1_0_0_0 MATURE 1 0.10 1 0.15 0 0.00 ag 19
...........TCAATAGtCTGTGAGCTCCT............................................. 411509_AGGAGCTCACAGACTATTGA_0_1_0_0_0_0 MATURE 1 0.10 1 0.15 0 0.00 12A7
........aataCAATAGACTGTGAGCTCCT............................................. 223552_AGGAGCTCACAGTCTATTGTATT_0_0_1_0_0_0 MATURE 1 0.10 1 0.15 0 0.00 aata 19
..........TTgAATAGACTGTGAGCTCCT............................................. 360308_AGGAGCTCACAGTCTATTCAA_1_0_0_0_0_0 MATURE 1 0.10 1 0.15 0 0.00 18C2
...........TCAATAGACgGTGAGCTCCT............................................. 312821_AGGAGCTCACCGTCTATTGA_0_1_0_0_0_0 MATURE 1 0.10 1 0.15 0 0.00 10C9
.........aataAATAGACTGTGAGCTCCT............................................. 328430_AGGAGCTCACAGTCTATTTATT_0_0_1_0_0_0 MATURE 1 0.10 1 0.15 0 0.00 aata 18
..........actAATAGACTGTGAGCTCCT............................................. 319313_AGGAGCTCACAGTCTATTAGT_0_0_1_0_0_0 MATURE 1 0.10 1 0.15 0 0.00 act 18
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993 653 340
(65.76) (34.24)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
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MATURE 653 340 993 100.00%
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653 340 993
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