[BEGIN]

REFERENCE HAIRPIN
*******************************************************************************************
ID                 : mmu-mir-99b
DESCRIPTION        : mmu-mir-99b MI0000147 Mus musculus miR-99b stem-loop
CHROMOSOME         : 17
SPAN               : 17967152 - 17967221
LENGTH             : 70
SEQUENCE           : GGCACCCACCCGTAGAACCGACCTTGCGGGGCCTTCGCCGCACACAAGCTCGTGTCTGTGGGTCCGTGTC
OVERHANG THRESHOLD : 75%
*******************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-99b
ACCID      : MI0000147
PARENT     : mmu-mir-99b
CHROMOSOME : 17
START      : 17967152
STOP       : 17967221
OFFSET     : 7..28
SEQUENCE   : CACCCGTAGAACCGACCTTGCG
STRAND     : +
******************************


TARGET
******************************
CATEGORY   : MATURESTAR
ID         : mmu-miR-99b*
ACCID      : MI0000147
PARENT     : mmu-mir-99b
CHROMOSOME : 17
START      : 17967152
STOP       : 17967221
OFFSET     : 45..66
SEQUENCE   : CAAGCTCGTGTCTGTGGGTCCG
STRAND     : +
******************************



*** MATURE ***
______________________________________________________________________
GGCACCCACCCGTAGAACCGACCTTGCGGGGCCTTCGCCGCACACAAGCTCGTGTCTGTGGGTCCGTGTC REF                  17                   17967152 - 17967221  
      CACCCGTAGAACCGACCTTGCG                                           MATURE               17                   17967159 - 17967249  mmu-miR-99b          +                    
                                            CAAGCTCGTGTCTGTGGGTCCG     MATURESTAR           17                   17967197 - 17967287  mmu-miR-99b*         +                    
______________________________________________________________________

                                                                  -SEQ-                       -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.......ACCCGTAGAACCGACCTTGCG...........................................   read_124263_11_19_10_7_4_7       MATURE           58        36.48           40        35.71           18        38.30                        21   
.......ACCCGTAGAACCGACCTTGC............................................     read_266001_7_10_5_4_4_4       MATURE           34        21.38           22        19.64           12        25.53                        20   
.......ACCCGTAGAACCGACCTTGCGt..........................................      read_371403_4_5_6_0_1_1       MATURE           17        10.69           15        13.39            2         4.26            t           21   
.......ACCCGTAGAACCGACCTTG.............................................      read_396657_2_3_1_1_2_1       MATURE           10         6.29            6         5.36            4         8.51                        19   
.......ACCCGTAGAACCGACCTTGCGtt.........................................      read_162641_0_2_1_0_0_0       MATURE            3         1.89            3         2.68            0         0.00           tt           21   
.......ACCCGTAGAACCGACCTTGCGa..........................................      read_117254_1_0_0_0_1_1       MATURE            3         1.89            1         0.89            2         4.26            a           21   
.......cCCCGTAGAACCGACCTTGC............................................       read_70392_0_0_0_1_1_0       MATURE            2         1.26            0         0.00            2         4.26                        19   
.......ACCCGTAGAACCGAaCTTGCG...........................................      read_337156_0_1_0_0_1_0       MATURE            2         1.26            1         0.89            1         2.13                      14A6   
.......ACCCGTAGAACCGACCTT..............................................      read_394434_0_1_0_0_1_0       MATURE            2         1.26            1         0.89            1         2.13                        18   
.......ACCCGTAGAACaGACCTTGCG...........................................      read_300959_0_1_1_0_0_0       MATURE            2         1.26            2         1.79            0         0.00                      11A9   
.......ACCCGTAGAACCGACaTTGCG...........................................      read_218811_2_0_0_0_0_0       MATURE            2         1.26            2         1.79            0         0.00                      15A5   
.......ACCCGTAGAACCGACCTTtc............................................      read_105231_0_2_0_0_0_0       MATURE            2         1.26            2         1.79            0         0.00           tc           18   
.......ACCCGTAGAACCGACCTTGCa...........................................       read_34211_1_1_0_0_0_0       MATURE            2         1.26            2         1.79            0         0.00            a           20   
.......ACCCGTAGAACCGAaCTTGC............................................      read_115871_1_0_0_0_0_1       MATURE            2         1.26            1         0.89            1         2.13                      14A5   
........CCCGTAGAACCGACCTTGCG...........................................       read_69374_0_0_0_0_1_0       MATURE            1         0.63            0         0.00            1         2.13                        20   
.......ACCCGTAGAACCGAtCTTGCG...........................................       read_50424_0_1_0_0_0_0       MATURE            1         0.63            1         0.89            0         0.00                      14T6   
.......ACCCGTAGAACCGAgCTTGCG...........................................      read_276005_1_0_0_0_0_0       MATURE            1         0.63            1         0.89            0         0.00                      14G6   
.......ACCCGTAGAACCGACtTTGC............................................      read_271752_0_0_1_0_0_0       MATURE            1         0.63            1         0.89            0         0.00                      15T4   
.......ACCCGTAGAACCGACCTTcc............................................      read_381739_0_0_0_1_0_0       MATURE            1         0.63            0         0.00            1         2.13           cc           18   
.......ACCCGTAGAACCGACCTTaca...........................................      read_366462_0_1_0_0_0_0       MATURE            1         0.63            1         0.89            0         0.00          aca           18   
.......ACCCGTAGAACtGACCTTGC............................................      read_224890_0_1_0_0_0_0       MATURE            1         0.63            1         0.89            0         0.00                      11T8   
.......ACCCaTAGAACCGACCTTGCG...........................................      read_104744_0_1_0_0_0_0       MATURE            1         0.63            1         0.89            0         0.00                      4A16   
.......ACCCGTAGAACCGtCCTTGCG...........................................      read_343852_0_0_0_0_0_1       MATURE            1         0.63            0         0.00            1         2.13                      13T7   
.......ACCCGTAGAACCGACCTTGa............................................      read_123062_0_1_0_0_0_0       MATURE            1         0.63            1         0.89            0         0.00            a           19   
.......ACCCGTAGAAtCGACCTTGC............................................      read_409040_0_1_0_0_0_0       MATURE            1         0.63            1         0.89            0         0.00                      10T9   
.......ACCCGTAGAACCGACCTTGCGGat........................................      read_133949_0_0_0_1_0_0       MATURE            1         0.63            0         0.00            1         2.13           at           22   
.......ACCCGTAGAACCGACCTaGCG...........................................      read_383623_0_1_0_0_0_0       MATURE            1         0.63            1         0.89            0         0.00                      17A3   
.......ACCCGTAGAACCGAtCTTGCGt..........................................      read_121868_1_0_0_0_0_0       MATURE            1         0.63            1         0.89            0         0.00            t         14T6   
.......ACCCGTAGAACCGAaCTTGCGa..........................................      read_388973_1_0_0_0_0_0       MATURE            1         0.63            1         0.89            0         0.00            a         14A6   
.......ACCCGTAGAACCGgCCTTGC............................................      read_122066_0_0_1_0_0_0       MATURE            1         0.63            1         0.89            0         0.00                      13G6   
.......ACCCGTAGAACCGACCTTGCGta.........................................      read_338365_1_0_0_0_0_0       MATURE            1         0.63            1         0.89            0         0.00           ta           21   
.......ACCCGTAGAACCGACCTTGtga..........................................       read_52982_0_1_0_0_0_0       MATURE            1         0.63            1         0.89            0         0.00          tga           19   
                                                                                                                    ----------                ----------                ----------   
                                                                                                                           159                       112                        47                                          
                                                                                                                                                 (70.44)                   (29.56)                                       




*** MATURESTAR ***
______________________________________________________________________
GGCACCCACCCGTAGAACCGACCTTGCGGGGCCTTCGCCGCACACAAGCTCGTGTCTGTGGGTCCGTGTC REF                  17                   17967152 - 17967221  
      CACCCGTAGAACCGACCTTGCG                                           MATURE               17                   17967159 - 17967249  mmu-miR-99b          +                    
                                            CAAGCTCGTGTCTGTGGGTCCG     MATURESTAR           17                   17967197 - 17967287  mmu-miR-99b*         +                    
______________________________________________________________________

                                                                  -SEQ-                   -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.............................................AAGCTCGTGTCTGTGGGTCCG.....   read_97919_0_0_0_0_0_1   MATURESTAR            1       100.00            0            0            1       100.00                        21   
                                                                                                                ----------                ----------                ----------   
                                                                                                                         1                         0                         1                                          
                                                                                                                                              (0.00)                  (100.00)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE             112              47             159          99.38%
     MATURESTAR               0               1               1           0.62%
                     ----------      ----------      ----------                
                            112              48             160                



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