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REFERENCE HAIRPIN
**************************************************************************************
ID                 : mmu-mir-99a
DESCRIPTION        : mmu-mir-99a MI0000146 Mus musculus miR-99a stem-loop
CHROMOSOME         : 16
SPAN               : 77599181 - 77599245
LENGTH             : 65
SEQUENCE           : CATAAACCCGTAGATCCGATCTTGTGGTGAAGTGGACCGCGCAAGCTCGTTTCTATGGGTCTGTG
OVERHANG THRESHOLD : 75%
**************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-99a
ACCID      : MI0000146
PARENT     : mmu-mir-99a
CHROMOSOME : 16
START      : 77599181
STOP       : 77599245
OFFSET     : 5..26
SEQUENCE   : AACCCGTAGATCCGATCTTGTG
STRAND     : +
******************************



*** MATURE ***
_________________________________________________________________
CATAAACCCGTAGATCCGATCTTGTGGTGAAGTGGACCGCGCAAGCTCGTTTCTATGGGTCTGTG REF                  16                   77599181 - 77599245  
    AACCCGTAGATCCGATCTTGTG                                        MATURE               16                   77599186 - 77599271  mmu-miR-99a          +                    
_________________________________________________________________

                                                             -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.....ACCCGTAGATCCGATCTTGT.........................................   read_395447_2_3_1_1_3_1       MATURE           11        25.00            6        18.18            5        45.45                        20   
.....ACCCGTAGATCCGATCTTGTG........................................   read_150527_3_3_3_1_0_0       MATURE           10        22.73            9        27.27            1         9.09                        21   
.....ACCCGTAGATCCGATCTTGTGt.......................................   read_368600_1_5_2_0_1_1       MATURE           10        22.73            8        24.24            2        18.18            t           21   
.....ACCCGTAGATCCGATCTTG..........................................   read_171855_1_3_0_0_0_2       MATURE            6        13.64            4        12.12            2        18.18                        19   
.....ACCCGTAGATCCGATCTT...........................................   read_309297_1_1_0_0_0_0       MATURE            2         4.55            2         6.06            0         0.00                        18   
.....ACCCGTAGATCCGATCTTGTGa.......................................   read_177728_1_1_0_0_0_0       MATURE            2         4.55            2         6.06            0         0.00            a           21   
.....ACCCGTAGATCCGATCTTGTGaa......................................    read_72254_0_1_0_0_0_0       MATURE            1         2.27            1         3.03            0         0.00           aa           21   
.....ACCCGTAGATCtGATCTTGT.........................................    read_84126_0_0_0_0_0_1       MATURE            1         2.27            0         0.00            1         9.09                      11T8   
.....ACCCGTAGATCCGATCT............................................   read_225683_0_1_0_0_0_0       MATURE            1         2.27            1         3.03            0         0.00                        17   
                                                                                                            ----------                ----------                ----------   
                                                                                                                    44                        33                        11                                          
                                                                                                                                         (75.00)                   (25.00)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE              33              11              44         100.00%
                     ----------      ----------      ----------                
                             33              11              44                



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