[BEGIN]

REFERENCE HAIRPIN
*********************************************************************************************************************************
ID                 : mmu-mir-98
DESCRIPTION        : mmu-mir-98 MI0000586 Mus musculus miR-98 stem-loop
CHROMOSOME         : X
SPAN               : 148347757 - 148347864
LENGTH             : 108
SEQUENCE           : CTGCACATGCTGGGGTGAGGTAGTAAGTTGTATTGTTGTGGGGTAGGGATTTTAGGCCCCAGTAAGAAGATAACTATACAACTTACTACTTTCCTTGGTGTGTGGCAT
OVERHANG THRESHOLD : 75%
*********************************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-98
ACCID      : MI0000586
PARENT     : mmu-mir-98
CHROMOSOME : X
START      : 148347757
STOP       : 148347864
OFFSET     : 16..37
SEQUENCE   : TGAGGTAGTAAGTTGTATTGTT
STRAND     : +
******************************



*** MATURE ***
____________________________________________________________________________________________________________
CTGCACATGCTGGGGTGAGGTAGTAAGTTGTATTGTTGTGGGGTAGGGATTTTAGGCCCCAGTAAGAAGATAACTATACAACTTACTACTTTCCTTGGTGTGTGGCAT REF                  X                    148347757 - 148347864 
               TGAGGTAGTAAGTTGTATTGTT                                                                        MATURE               X                    148347773 - 148347901 mmu-miR-98           +                    
____________________________________________________________________________________________________________

                                                                                                        -SEQ-                            -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
................GAGGTAGTAAGTTGTATTGTT........................................................................   read_16470_138_133_103_45_51_77       MATURE          547        40.55          374        39.33          173        43.47                        21   
................GAGGTAGTAAGTTGTATTGT.........................................................................     read_364781_60_58_49_21_24_27       MATURE          239        17.72          167        17.56           72        18.09                        20   
................GAGGTAGTAgGTTGTATTGTT........................................................................       read_41636_23_50_49_11_10_9       MATURE          152        11.27          122        12.83           30         7.54                      9G11   
................GAGGTAGTAAGTTGTATTGTTt.......................................................................         read_96343_15_24_25_5_6_3       MATURE           78         5.78           64         6.73           14         3.52            t           21   
................GAGGTAGTAAGTTGTATTGTTa.......................................................................          read_20601_2_18_13_6_3_6       MATURE           48         3.56           33         3.47           15         3.77            a           21   
................GAGGTAGTAgGTTGTATTGT.........................................................................         read_341525_9_17_13_2_5_2       MATURE           48         3.56           39         4.10            9         2.26                      9G10   
................GAGGTAGTAAGTTGTATTtTT........................................................................           read_13843_5_9_10_6_3_7       MATURE           40         2.97           24         2.52           16         4.02                      18T2   
................GAGGTAGTAAGTTGTATTG..........................................................................           read_321157_7_7_5_4_3_0       MATURE           26         1.93           19         2.00            7         1.76                        19   
................GAGGTAGTAgGTTGTATTGTTa.......................................................................          read_318777_2_5_10_2_2_2       MATURE           23         1.70           17         1.79            6         1.51            a         9G11   
................GAGGTAGTAAGTTGTATT...........................................................................            read_31629_0_3_0_5_8_4       MATURE           20         1.48            3         0.32           17         4.27                        18   
................GAGGTAGTAAGTTGTATTtt.........................................................................           read_189035_4_5_4_2_2_2       MATURE           19         1.41           13         1.37            6         1.51           tt           18   
................GAGGTAGTAAGTTGTATgGTT........................................................................           read_378611_2_0_2_0_1_2       MATURE            7         0.52            4         0.42            3         0.75                      17G3   
................GAGGTAGTAAGTTGTATTGa.........................................................................            read_67185_0_2_1_0_0_3       MATURE            6         0.44            3         0.32            3         0.75            a           19   
................GAGGTAGTAAGTTGTATTGTTtt......................................................................            read_80895_1_1_0_0_0_3       MATURE            5         0.37            2         0.21            3         0.75           tt           21   
................GAGGgAGTAAGTTGTATTGTT........................................................................           read_245416_0_0_4_0_0_1       MATURE            5         0.37            4         0.42            1         0.25                      4G16   
................GAGGgAGTAAGTTGTATTGT.........................................................................           read_407002_1_2_2_0_0_0       MATURE            5         0.37            5         0.53            0         0.00                      4G15   
................GAGGTAGTAgGTTGTATTGTTat......................................................................           read_233685_3_0_2_0_0_0       MATURE            5         0.37            5         0.53            0         0.00           at         9G11   
................GAGGTAGTAAGTTGTATTGTaa.......................................................................            read_26354_1_2_1_0_0_1       MATURE            5         0.37            4         0.42            1         0.25           aa           20   
................GAGGTAGTAAGTTGTATaGTT........................................................................           read_298002_0_1_3_0_0_1       MATURE            5         0.37            4         0.42            1         0.25                      17A3   
................GAGGTAGTAAGTTGTATTGTa........................................................................           read_228954_0_1_1_0_0_2       MATURE            4         0.30            2         0.21            2         0.50            a           20   
................GAGGTAGTAAGTTGTATaGT.........................................................................           read_302494_0_2_0_0_1_1       MATURE            4         0.30            2         0.21            2         0.50                      17A2   
................GAGGTAGTAAGTTtTATTGTT........................................................................           read_215737_1_1_0_0_1_0       MATURE            3         0.22            2         0.21            1         0.25                      13T7   
...................GTAGTAAGTTGTATTGTT........................................................................           read_248667_0_1_0_0_1_1       MATURE            3         0.22            1         0.11            2         0.50                        18   
................GAGGTAGTAAGTTGTATTGTTat......................................................................           read_102418_0_2_1_0_0_0       MATURE            3         0.22            3         0.32            0         0.00           at           21   
................GAGGTAGTAAGTTGTATTt..........................................................................           read_176614_0_1_0_0_1_0       MATURE            2         0.15            1         0.11            1         0.25            t           18   
................GAGGTAGTAAGTTGTATTGTTaa......................................................................           read_328743_1_1_0_0_0_0       MATURE            2         0.15            2         0.21            0         0.00           aa           21   
................GAGGTAGTAAGTTGTATTGTTta......................................................................           read_209758_0_1_0_0_1_0       MATURE            2         0.15            1         0.11            1         0.25           ta           21   
................GAGGTAGTAgGTTGTATTGTTG.......................................................................           read_149594_0_1_1_0_0_0       MATURE            2         0.15            2         0.21            0         0.00                      9G12   
................GAGGTAGTAAGTTGTATTGTat.......................................................................            read_18794_0_1_1_0_0_0       MATURE            2         0.15            2         0.21            0         0.00           at           20   
................GAGGTAGTAAGTTGTtTTGTT........................................................................            read_60419_0_0_1_0_0_1       MATURE            2         0.15            1         0.11            1         0.25                      15T5   
................GAGGTAGTAAGTTGTATgGT.........................................................................           read_123380_0_1_1_0_0_0       MATURE            2         0.15            2         0.21            0         0.00                      17G2   
................GAGGTAGTAAGTTGTATTaa.........................................................................           read_126127_1_1_0_0_0_0       MATURE            2         0.15            2         0.21            0         0.00           aa           18   
...................GTAGTAAGTTGTATTGT.........................................................................           read_104134_1_0_0_0_0_1       MATURE            2         0.15            1         0.11            1         0.25                        17   
................GAGGTAcTAAGTTGTATTGTT........................................................................           read_245823_0_0_1_0_0_0       MATURE            1         0.07            1         0.11            0         0.00                      6C14   
...................GTAGTAAGTTGTATTGTTt.......................................................................            read_39567_0_1_0_0_0_0       MATURE            1         0.07            1         0.11            0         0.00            t           18   
................GAGGTAGTAAGTcGTATTGTT........................................................................            read_98035_1_0_0_0_0_0       MATURE            1         0.07            1         0.11            0         0.00                      12C8   
................cAGGTAGTAAGTTGTATTGTTa.......................................................................           read_408053_0_0_0_0_0_1       MATURE            1         0.07            0         0.00            1         0.25            a           20   
................GAGGTgGTAAGTTGTATTGTTt.......................................................................           read_346580_0_1_0_0_0_0       MATURE            1         0.07            1         0.11            0         0.00            t         5G15   
................GAGGTAGTAAGTTtTATTGTTa.......................................................................           read_407998_0_0_1_0_0_0       MATURE            1         0.07            1         0.11            0         0.00            a         13T7   
................GAGGTAGTAAGTTGTATTtTTa.......................................................................            read_30226_0_0_0_0_0_1       MATURE            1         0.07            0         0.00            1         0.25            a         18T2   
................GAGGTAcTAAGTTGTATTGTTa.......................................................................           read_158569_0_1_0_0_0_0       MATURE            1         0.07            1         0.11            0         0.00            a         6C14   
................GAGGTAtTAAGTTGTATTGTT........................................................................           read_101223_0_1_0_0_0_0       MATURE            1         0.07            1         0.11            0         0.00                      6T14   
................GAGGTAGTAAGTTGTAgTGTT........................................................................           read_354653_1_0_0_0_0_0       MATURE            1         0.07            1         0.11            0         0.00                      16G4   
................GAGGTAGTAAGTTGTATTa..........................................................................           read_195033_0_0_1_0_0_0       MATURE            1         0.07            1         0.11            0         0.00            a           18   
................GAGGTAGTAAGTTGTAcTGTTt.......................................................................           read_129062_1_0_0_0_0_0       MATURE            1         0.07            1         0.11            0         0.00            t         16C4   
................GAGGTAGTAAGTTGTATTtTTtctgt...................................................................            read_81977_0_0_0_0_1_0       MATURE            1         0.07            0         0.00            1         0.25        tctgt         18T2   
................GAGGTAcTAAGTTGTATTGTTt.......................................................................           read_392848_0_1_0_0_0_0       MATURE            1         0.07            1         0.11            0         0.00            t         6C14   
................GAGGTAGTAAGTTGcATTGTTt.......................................................................           read_267335_0_0_0_1_0_0       MATURE            1         0.07            0         0.00            1         0.25            t         14C6   
...............TGAGGTAGTAgGTTGTATTGT.........................................................................           read_153768_0_0_1_0_0_0       MATURE            1         0.07            1         0.11            0         0.00                     10G10   
................GAGGTAGTAAGTTGTATTGTTc.......................................................................            read_87218_0_0_0_1_0_0       MATURE            1         0.07            0         0.00            1         0.25            c           21   
................GAGGTAGTAAGTTtTATTGT.........................................................................           read_278426_0_1_0_0_0_0       MATURE            1         0.07            1         0.11            0         0.00                      13T6   
................GAGGTAGTAAGTTGTgTTGT.........................................................................             read_9601_0_0_0_0_0_1       MATURE            1         0.07            0         0.00            1         0.25                      15G4   
................GAGGTAGTAAGTTGTATTGTct.......................................................................           read_357455_0_1_0_0_0_0       MATURE            1         0.07            1         0.11            0         0.00           ct           20   
................GAGGTAtTAAGTTGTATTGT.........................................................................            read_21931_0_0_0_0_1_0       MATURE            1         0.07            0         0.00            1         0.25                      6T13   
................GAGGTAGTAAGTcGTATTGT.........................................................................           read_332332_0_0_1_0_0_0       MATURE            1         0.07            1         0.11            0         0.00                      12C7   
................GAGGTAGcAAGTTGTATTGT.........................................................................           read_276351_0_1_0_0_0_0       MATURE            1         0.07            1         0.11            0         0.00                      7C12   
................GAGGTAGTAAGTTGTcTTGTT........................................................................            read_50507_0_1_0_0_0_0       MATURE            1         0.07            1         0.11            0         0.00                      15C5   
................GAGGaAGTAAGTTGTATTGTT........................................................................            read_19090_0_1_0_0_0_0       MATURE            1         0.07            1         0.11            0         0.00                      4A16   
................GAGGTAGTAAGTTGTATaGTTa.......................................................................           read_374204_1_0_0_0_0_0       MATURE            1         0.07            1         0.11            0         0.00            a         17A3   
................GAGGTgGTAAGTTGTATTGT.........................................................................            read_73373_0_1_0_0_0_0       MATURE            1         0.07            1         0.11            0         0.00                      5G14   
................GAGGTAGTAAGTTGTATTGat........................................................................           read_243990_0_0_0_1_0_0       MATURE            1         0.07            0         0.00            1         0.25           at           19   
................GAGGTAGTAAGTTGTATTGTc........................................................................           read_397304_0_0_0_0_1_0       MATURE            1         0.07            0         0.00            1         0.25            c           20   
................GAGGTAGTAAGTTGTATTGTTG.......................................................................           read_161288_0_0_0_1_0_0       MATURE            1         0.07            0         0.00            1         0.25                        22   
................GAGGTAGTAAGTTGTAT............................................................................            read_10847_1_0_0_0_0_0       MATURE            1         0.07            1         0.11            0         0.00                        17   
                                                                                                                                                               ----------                ----------                ----------   
                                                                                                                                                                     1349                       951                       398                                          
                                                                                                                                                                                            (70.50)                   (29.50)                                       




*** OTHER ***
____________________________________________________________________________________________________________
CTGCACATGCTGGGGTGAGGTAGTAAGTTGTATTGTTGTGGGGTAGGGATTTTAGGCCCCAGTAAGAAGATAACTATACAACTTACTACTTTCCTTGGTGTGTGGCAT REF                  X                    148347757 - 148347864 
               TGAGGTAGTAAGTTGTATTGTT                                                                        MATURE               X                    148347773 - 148347901 mmu-miR-98           +                    
____________________________________________________________________________________________________________

                                                                                                        -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
..........................................................................TATACAACTTACTACTTTCCT..............   read_122525_1_2_1_1_0_1        OTHER            6        42.86            4        66.67            2        25.00                        21   
...........................................................................ATACAACTTACTACTTTCCT..............    read_42960_1_0_0_1_0_1        OTHER            3        21.43            1        16.67            2        25.00                        20   
...........................................................................ATACAACTTACTACTTTCCTT.............    read_91446_0_0_0_0_0_2        OTHER            2        14.29            0         0.00            2        25.00                        21   
..........................................................................TATACAACTTACTACTTTCC...............    read_93862_0_0_0_0_1_0        OTHER            1         7.14            0         0.00            1        12.50                        20   
..........................................................................TATACAACTTACTACTTTCCTT.............   read_150436_0_0_0_1_0_0        OTHER            1         7.14            0         0.00            1        12.50                        22   
...........................................................................ATACAACTTACTACTTTCC...............   read_245030_1_0_0_0_0_0        OTHER            1         7.14            1        16.67            0         0.00                        19   
                                                                                                                                                       ----------                ----------                ----------   
                                                                                                                                                               14                         6                         8                                          
                                                                                                                                                                                    (42.86)                   (57.14)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE             951             398            1349          98.97%
          OTHER               6               8              14           1.03%
                     ----------      ----------      ----------                
                            957             406            1363                



[END]
