[BEGIN]
REFERENCE HAIRPIN
*********************************************************************************************************************************
ID : mmu-mir-98
DESCRIPTION : mmu-mir-98 MI0000586 Mus musculus miR-98 stem-loop
CHROMOSOME : X
SPAN : 148347757 - 148347864
LENGTH : 108
SEQUENCE : CTGCACATGCTGGGGTGAGGTAGTAAGTTGTATTGTTGTGGGGTAGGGATTTTAGGCCCCAGTAAGAAGATAACTATACAACTTACTACTTTCCTTGGTGTGTGGCAT
OVERHANG THRESHOLD : 75%
*********************************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-98
ACCID : MI0000586
PARENT : mmu-mir-98
CHROMOSOME : X
START : 148347757
STOP : 148347864
OFFSET : 16..37
SEQUENCE : TGAGGTAGTAAGTTGTATTGTT
STRAND : +
******************************
*** MATURE ***
____________________________________________________________________________________________________________
CTGCACATGCTGGGGTGAGGTAGTAAGTTGTATTGTTGTGGGGTAGGGATTTTAGGCCCCAGTAAGAAGATAACTATACAACTTACTACTTTCCTTGGTGTGTGGCAT REF X 148347757 - 148347864
TGAGGTAGTAAGTTGTATTGTT MATURE X 148347773 - 148347901 mmu-miR-98 +
____________________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
................GAGGTAGTAAGTTGTATTGTT........................................................................ read_16470_138_133_103_45_51_77 MATURE 547 40.55 374 39.33 173 43.47 21
................GAGGTAGTAAGTTGTATTGT......................................................................... read_364781_60_58_49_21_24_27 MATURE 239 17.72 167 17.56 72 18.09 20
................GAGGTAGTAgGTTGTATTGTT........................................................................ read_41636_23_50_49_11_10_9 MATURE 152 11.27 122 12.83 30 7.54 9G11
................GAGGTAGTAAGTTGTATTGTTt....................................................................... read_96343_15_24_25_5_6_3 MATURE 78 5.78 64 6.73 14 3.52 t 21
................GAGGTAGTAAGTTGTATTGTTa....................................................................... read_20601_2_18_13_6_3_6 MATURE 48 3.56 33 3.47 15 3.77 a 21
................GAGGTAGTAgGTTGTATTGT......................................................................... read_341525_9_17_13_2_5_2 MATURE 48 3.56 39 4.10 9 2.26 9G10
................GAGGTAGTAAGTTGTATTtTT........................................................................ read_13843_5_9_10_6_3_7 MATURE 40 2.97 24 2.52 16 4.02 18T2
................GAGGTAGTAAGTTGTATTG.......................................................................... read_321157_7_7_5_4_3_0 MATURE 26 1.93 19 2.00 7 1.76 19
................GAGGTAGTAgGTTGTATTGTTa....................................................................... read_318777_2_5_10_2_2_2 MATURE 23 1.70 17 1.79 6 1.51 a 9G11
................GAGGTAGTAAGTTGTATT........................................................................... read_31629_0_3_0_5_8_4 MATURE 20 1.48 3 0.32 17 4.27 18
................GAGGTAGTAAGTTGTATTtt......................................................................... read_189035_4_5_4_2_2_2 MATURE 19 1.41 13 1.37 6 1.51 tt 18
................GAGGTAGTAAGTTGTATgGTT........................................................................ read_378611_2_0_2_0_1_2 MATURE 7 0.52 4 0.42 3 0.75 17G3
................GAGGTAGTAAGTTGTATTGa......................................................................... read_67185_0_2_1_0_0_3 MATURE 6 0.44 3 0.32 3 0.75 a 19
................GAGGTAGTAAGTTGTATTGTTtt...................................................................... read_80895_1_1_0_0_0_3 MATURE 5 0.37 2 0.21 3 0.75 tt 21
................GAGGgAGTAAGTTGTATTGTT........................................................................ read_245416_0_0_4_0_0_1 MATURE 5 0.37 4 0.42 1 0.25 4G16
................GAGGgAGTAAGTTGTATTGT......................................................................... read_407002_1_2_2_0_0_0 MATURE 5 0.37 5 0.53 0 0.00 4G15
................GAGGTAGTAgGTTGTATTGTTat...................................................................... read_233685_3_0_2_0_0_0 MATURE 5 0.37 5 0.53 0 0.00 at 9G11
................GAGGTAGTAAGTTGTATTGTaa....................................................................... read_26354_1_2_1_0_0_1 MATURE 5 0.37 4 0.42 1 0.25 aa 20
................GAGGTAGTAAGTTGTATaGTT........................................................................ read_298002_0_1_3_0_0_1 MATURE 5 0.37 4 0.42 1 0.25 17A3
................GAGGTAGTAAGTTGTATTGTa........................................................................ read_228954_0_1_1_0_0_2 MATURE 4 0.30 2 0.21 2 0.50 a 20
................GAGGTAGTAAGTTGTATaGT......................................................................... read_302494_0_2_0_0_1_1 MATURE 4 0.30 2 0.21 2 0.50 17A2
................GAGGTAGTAAGTTtTATTGTT........................................................................ read_215737_1_1_0_0_1_0 MATURE 3 0.22 2 0.21 1 0.25 13T7
...................GTAGTAAGTTGTATTGTT........................................................................ read_248667_0_1_0_0_1_1 MATURE 3 0.22 1 0.11 2 0.50 18
................GAGGTAGTAAGTTGTATTGTTat...................................................................... read_102418_0_2_1_0_0_0 MATURE 3 0.22 3 0.32 0 0.00 at 21
................GAGGTAGTAAGTTGTATTt.......................................................................... read_176614_0_1_0_0_1_0 MATURE 2 0.15 1 0.11 1 0.25 t 18
................GAGGTAGTAAGTTGTATTGTTaa...................................................................... read_328743_1_1_0_0_0_0 MATURE 2 0.15 2 0.21 0 0.00 aa 21
................GAGGTAGTAAGTTGTATTGTTta...................................................................... read_209758_0_1_0_0_1_0 MATURE 2 0.15 1 0.11 1 0.25 ta 21
................GAGGTAGTAgGTTGTATTGTTG....................................................................... read_149594_0_1_1_0_0_0 MATURE 2 0.15 2 0.21 0 0.00 9G12
................GAGGTAGTAAGTTGTATTGTat....................................................................... read_18794_0_1_1_0_0_0 MATURE 2 0.15 2 0.21 0 0.00 at 20
................GAGGTAGTAAGTTGTtTTGTT........................................................................ read_60419_0_0_1_0_0_1 MATURE 2 0.15 1 0.11 1 0.25 15T5
................GAGGTAGTAAGTTGTATgGT......................................................................... read_123380_0_1_1_0_0_0 MATURE 2 0.15 2 0.21 0 0.00 17G2
................GAGGTAGTAAGTTGTATTaa......................................................................... read_126127_1_1_0_0_0_0 MATURE 2 0.15 2 0.21 0 0.00 aa 18
...................GTAGTAAGTTGTATTGT......................................................................... read_104134_1_0_0_0_0_1 MATURE 2 0.15 1 0.11 1 0.25 17
................GAGGTAcTAAGTTGTATTGTT........................................................................ read_245823_0_0_1_0_0_0 MATURE 1 0.07 1 0.11 0 0.00 6C14
...................GTAGTAAGTTGTATTGTTt....................................................................... read_39567_0_1_0_0_0_0 MATURE 1 0.07 1 0.11 0 0.00 t 18
................GAGGTAGTAAGTcGTATTGTT........................................................................ read_98035_1_0_0_0_0_0 MATURE 1 0.07 1 0.11 0 0.00 12C8
................cAGGTAGTAAGTTGTATTGTTa....................................................................... read_408053_0_0_0_0_0_1 MATURE 1 0.07 0 0.00 1 0.25 a 20
................GAGGTgGTAAGTTGTATTGTTt....................................................................... read_346580_0_1_0_0_0_0 MATURE 1 0.07 1 0.11 0 0.00 t 5G15
................GAGGTAGTAAGTTtTATTGTTa....................................................................... read_407998_0_0_1_0_0_0 MATURE 1 0.07 1 0.11 0 0.00 a 13T7
................GAGGTAGTAAGTTGTATTtTTa....................................................................... read_30226_0_0_0_0_0_1 MATURE 1 0.07 0 0.00 1 0.25 a 18T2
................GAGGTAcTAAGTTGTATTGTTa....................................................................... read_158569_0_1_0_0_0_0 MATURE 1 0.07 1 0.11 0 0.00 a 6C14
................GAGGTAtTAAGTTGTATTGTT........................................................................ read_101223_0_1_0_0_0_0 MATURE 1 0.07 1 0.11 0 0.00 6T14
................GAGGTAGTAAGTTGTAgTGTT........................................................................ read_354653_1_0_0_0_0_0 MATURE 1 0.07 1 0.11 0 0.00 16G4
................GAGGTAGTAAGTTGTATTa.......................................................................... read_195033_0_0_1_0_0_0 MATURE 1 0.07 1 0.11 0 0.00 a 18
................GAGGTAGTAAGTTGTAcTGTTt....................................................................... read_129062_1_0_0_0_0_0 MATURE 1 0.07 1 0.11 0 0.00 t 16C4
................GAGGTAGTAAGTTGTATTtTTtctgt................................................................... read_81977_0_0_0_0_1_0 MATURE 1 0.07 0 0.00 1 0.25 tctgt 18T2
................GAGGTAcTAAGTTGTATTGTTt....................................................................... read_392848_0_1_0_0_0_0 MATURE 1 0.07 1 0.11 0 0.00 t 6C14
................GAGGTAGTAAGTTGcATTGTTt....................................................................... read_267335_0_0_0_1_0_0 MATURE 1 0.07 0 0.00 1 0.25 t 14C6
...............TGAGGTAGTAgGTTGTATTGT......................................................................... read_153768_0_0_1_0_0_0 MATURE 1 0.07 1 0.11 0 0.00 10G10
................GAGGTAGTAAGTTGTATTGTTc....................................................................... read_87218_0_0_0_1_0_0 MATURE 1 0.07 0 0.00 1 0.25 c 21
................GAGGTAGTAAGTTtTATTGT......................................................................... read_278426_0_1_0_0_0_0 MATURE 1 0.07 1 0.11 0 0.00 13T6
................GAGGTAGTAAGTTGTgTTGT......................................................................... read_9601_0_0_0_0_0_1 MATURE 1 0.07 0 0.00 1 0.25 15G4
................GAGGTAGTAAGTTGTATTGTct....................................................................... read_357455_0_1_0_0_0_0 MATURE 1 0.07 1 0.11 0 0.00 ct 20
................GAGGTAtTAAGTTGTATTGT......................................................................... read_21931_0_0_0_0_1_0 MATURE 1 0.07 0 0.00 1 0.25 6T13
................GAGGTAGTAAGTcGTATTGT......................................................................... read_332332_0_0_1_0_0_0 MATURE 1 0.07 1 0.11 0 0.00 12C7
................GAGGTAGcAAGTTGTATTGT......................................................................... read_276351_0_1_0_0_0_0 MATURE 1 0.07 1 0.11 0 0.00 7C12
................GAGGTAGTAAGTTGTcTTGTT........................................................................ read_50507_0_1_0_0_0_0 MATURE 1 0.07 1 0.11 0 0.00 15C5
................GAGGaAGTAAGTTGTATTGTT........................................................................ read_19090_0_1_0_0_0_0 MATURE 1 0.07 1 0.11 0 0.00 4A16
................GAGGTAGTAAGTTGTATaGTTa....................................................................... read_374204_1_0_0_0_0_0 MATURE 1 0.07 1 0.11 0 0.00 a 17A3
................GAGGTgGTAAGTTGTATTGT......................................................................... read_73373_0_1_0_0_0_0 MATURE 1 0.07 1 0.11 0 0.00 5G14
................GAGGTAGTAAGTTGTATTGat........................................................................ read_243990_0_0_0_1_0_0 MATURE 1 0.07 0 0.00 1 0.25 at 19
................GAGGTAGTAAGTTGTATTGTc........................................................................ read_397304_0_0_0_0_1_0 MATURE 1 0.07 0 0.00 1 0.25 c 20
................GAGGTAGTAAGTTGTATTGTTG....................................................................... read_161288_0_0_0_1_0_0 MATURE 1 0.07 0 0.00 1 0.25 22
................GAGGTAGTAAGTTGTAT............................................................................ read_10847_1_0_0_0_0_0 MATURE 1 0.07 1 0.11 0 0.00 17
---------- ---------- ----------
1349 951 398
(70.50) (29.50)
*** OTHER ***
____________________________________________________________________________________________________________
CTGCACATGCTGGGGTGAGGTAGTAAGTTGTATTGTTGTGGGGTAGGGATTTTAGGCCCCAGTAAGAAGATAACTATACAACTTACTACTTTCCTTGGTGTGTGGCAT REF X 148347757 - 148347864
TGAGGTAGTAAGTTGTATTGTT MATURE X 148347773 - 148347901 mmu-miR-98 +
____________________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..........................................................................TATACAACTTACTACTTTCCT.............. read_122525_1_2_1_1_0_1 OTHER 6 42.86 4 66.67 2 25.00 21
...........................................................................ATACAACTTACTACTTTCCT.............. read_42960_1_0_0_1_0_1 OTHER 3 21.43 1 16.67 2 25.00 20
...........................................................................ATACAACTTACTACTTTCCTT............. read_91446_0_0_0_0_0_2 OTHER 2 14.29 0 0.00 2 25.00 21
..........................................................................TATACAACTTACTACTTTCC............... read_93862_0_0_0_0_1_0 OTHER 1 7.14 0 0.00 1 12.50 20
..........................................................................TATACAACTTACTACTTTCCTT............. read_150436_0_0_0_1_0_0 OTHER 1 7.14 0 0.00 1 12.50 22
...........................................................................ATACAACTTACTACTTTCC............... read_245030_1_0_0_0_0_0 OTHER 1 7.14 1 16.67 0 0.00 19
---------- ---------- ----------
14 6 8
(42.86) (57.14)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 951 398 1349 98.97%
OTHER 6 8 14 1.03%
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957 406 1363
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