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REFERENCE HAIRPIN
*********************************************************************************************
ID                 : mmu-mir-9-2
DESCRIPTION        : mmu-mir-9-2 MI0000157 Mus musculus miR-9-2 stem-loop
CHROMOSOME         : 13
SPAN               : 83878419 - 83878490
LENGTH             : 72
SEQUENCE           : GTTGTTATCTTTGGTTATCTAGCTGTATGAGTGTATTGGTCTTCATAAAGCTAGATAACCGAAAGTAAAAAC
OVERHANG THRESHOLD : 75%
*********************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-9
ACCID      : MI0000157
PARENT     : mmu-mir-9-2
CHROMOSOME : 13
START      : 83878419
STOP       : 83878490
OFFSET     : 8..30
SEQUENCE   : TCTTTGGTTATCTAGCTGTATGA
STRAND     : +
******************************


TARGET
******************************
CATEGORY   : MATURESTAR
ID         : mmu-miR-9*
ACCID      : MI0000157
PARENT     : mmu-mir-9-2
CHROMOSOME : 13
START      : 83878419
STOP       : 83878490
OFFSET     : 45..66
SEQUENCE   : ATAAAGCTAGATAACCGAAAGT
STRAND     : +
******************************



*** MATURE ***
________________________________________________________________________
GTTGTTATCTTTGGTTATCTAGCTGTATGAGTGTATTGGTCTTCATAAAGCTAGATAACCGAAAGTAAAAAC REF                  13                   83878419 - 83878490  
       TCTTTGGTTATCTAGCTGTATGA                                           MATURE               13                   83878427 - 83878520  mmu-miR-9            +                    
                                            ATAAAGCTAGATAACCGAAAGT       MATURESTAR           13                   83878464 - 83878556  mmu-miR-9*           +                    
________________________________________________________________________

                                                                    -SEQ-                       -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
........CTTTGGTTATCTAGCTGTATG............................................       read_12739_1_0_0_0_0_0       MATURE            1        33.33            1       100.00            0         0.00                        21   
........CTTTGGTTATCTAGCTGTATGt...........................................      read_128168_0_0_0_0_1_0       MATURE            1        33.33            0         0.00            1        50.00            t           21   
........CTTTGGTTATCTAGCTGTAT.............................................      read_237849_0_0_0_0_0_1       MATURE            1        33.33            0         0.00            1        50.00                        20   
                                                                                                                      ----------                ----------                ----------   
                                                                                                                               3                         1                         2                                          
                                                                                                                                                   (33.33)                   (66.67)                                       




*** MATURESTAR ***
________________________________________________________________________
GTTGTTATCTTTGGTTATCTAGCTGTATGAGTGTATTGGTCTTCATAAAGCTAGATAACCGAAAGTAAAAAC REF                  13                   83878419 - 83878490  
       TCTTTGGTTATCTAGCTGTATGA                                           MATURE               13                   83878427 - 83878520  mmu-miR-9            +                    
                                            ATAAAGCTAGATAACCGAAAGT       MATURESTAR           13                   83878464 - 83878556  mmu-miR-9*           +                    
________________________________________________________________________

                                                                    -SEQ-                       -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
..............................................AAAGCTAGATAACCGAAAGTAt.....       read_15390_0_3_0_0_0_0   MATURESTAR            3        60.00            3        60.00            0            0            t           21   
..............................................AAAGCTAGATAACCGAAAGT.......      read_216777_1_0_0_0_0_0   MATURESTAR            1        20.00            1        20.00            0            0                        20   
..............................................AAAGCTAGATAACCGAAAGTtt.....      read_335298_0_0_1_0_0_0   MATURESTAR            1        20.00            1        20.00            0            0           tt           20   
                                                                                                                      ----------                ----------                ----------   
                                                                                                                               5                         5                         0                                          
                                                                                                                                                  (100.00)                    (0.00)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE               1               2               3          37.50%
     MATURESTAR               5               0               5          62.50%
                     ----------      ----------      ----------                
                              6               2               8                



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