[BEGIN]
REFERENCE HAIRPIN
*********************************************************************************************
ID : mmu-mir-9-2
DESCRIPTION : mmu-mir-9-2 MI0000157 Mus musculus miR-9-2 stem-loop
CHROMOSOME : 13
SPAN : 83878419 - 83878490
LENGTH : 72
SEQUENCE : GTTGTTATCTTTGGTTATCTAGCTGTATGAGTGTATTGGTCTTCATAAAGCTAGATAACCGAAAGTAAAAAC
OVERHANG THRESHOLD : 75%
*********************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-9
ACCID : MI0000157
PARENT : mmu-mir-9-2
CHROMOSOME : 13
START : 83878419
STOP : 83878490
OFFSET : 8..30
SEQUENCE : TCTTTGGTTATCTAGCTGTATGA
STRAND : +
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-9*
ACCID : MI0000157
PARENT : mmu-mir-9-2
CHROMOSOME : 13
START : 83878419
STOP : 83878490
OFFSET : 45..66
SEQUENCE : ATAAAGCTAGATAACCGAAAGT
STRAND : +
******************************
*** MATURE ***
________________________________________________________________________
GTTGTTATCTTTGGTTATCTAGCTGTATGAGTGTATTGGTCTTCATAAAGCTAGATAACCGAAAGTAAAAAC REF 13 83878419 - 83878490
TCTTTGGTTATCTAGCTGTATGA MATURE 13 83878427 - 83878520 mmu-miR-9 +
ATAAAGCTAGATAACCGAAAGT MATURESTAR 13 83878464 - 83878556 mmu-miR-9* +
________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
........CTTTGGTTATCTAGCTGTATG............................................ read_12739_1_0_0_0_0_0 MATURE 1 33.33 1 100.00 0 0.00 21
........CTTTGGTTATCTAGCTGTATGt........................................... read_128168_0_0_0_0_1_0 MATURE 1 33.33 0 0.00 1 50.00 t 21
........CTTTGGTTATCTAGCTGTAT............................................. read_237849_0_0_0_0_0_1 MATURE 1 33.33 0 0.00 1 50.00 20
---------- ---------- ----------
3 1 2
(33.33) (66.67)
*** MATURESTAR ***
________________________________________________________________________
GTTGTTATCTTTGGTTATCTAGCTGTATGAGTGTATTGGTCTTCATAAAGCTAGATAACCGAAAGTAAAAAC REF 13 83878419 - 83878490
TCTTTGGTTATCTAGCTGTATGA MATURE 13 83878427 - 83878520 mmu-miR-9 +
ATAAAGCTAGATAACCGAAAGT MATURESTAR 13 83878464 - 83878556 mmu-miR-9* +
________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..............................................AAAGCTAGATAACCGAAAGTAt..... read_15390_0_3_0_0_0_0 MATURESTAR 3 60.00 3 60.00 0 0 t 21
..............................................AAAGCTAGATAACCGAAAGT....... read_216777_1_0_0_0_0_0 MATURESTAR 1 20.00 1 20.00 0 0 20
..............................................AAAGCTAGATAACCGAAAGTtt..... read_335298_0_0_1_0_0_0 MATURESTAR 1 20.00 1 20.00 0 0 tt 20
---------- ---------- ----------
5 5 0
(100.00) (0.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 1 2 3 37.50%
MATURESTAR 5 0 5 62.50%
---------- ---------- ----------
6 2 8
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