[BEGIN]
REFERENCE HAIRPIN
**************************************************************************************************************
ID : mmu-mir-9-1
DESCRIPTION : mmu-mir-9-1 MI0000720 Mus musculus miR-9-1 stem-loop
CHROMOSOME : 3
SPAN : 88019520 - 88019608
LENGTH : 89
SEQUENCE : CGGGGTTGGTTGTTATCTTTGGTTATCTAGCTGTATGAGTGGTGTGGAGTCTTCATAAAGCTAGATAACCGAAAGTAAAAATAACCCCA
OVERHANG THRESHOLD : 75%
**************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-9
ACCID : MI0000720
PARENT : mmu-mir-9-1
CHROMOSOME : 3
START : 88019520
STOP : 88019608
OFFSET : 16..38
SEQUENCE : TCTTTGGTTATCTAGCTGTATGA
STRAND : +
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-9*
ACCID : MI0000720
PARENT : mmu-mir-9-1
CHROMOSOME : 3
START : 88019520
STOP : 88019608
OFFSET : 55..76
SEQUENCE : ATAAAGCTAGATAACCGAAAGT
STRAND : +
******************************
*** MATURE ***
_________________________________________________________________________________________
CGGGGTTGGTTGTTATCTTTGGTTATCTAGCTGTATGAGTGGTGTGGAGTCTTCATAAAGCTAGATAACCGAAAGTAAAAATAACCCCA REF 3 88019520 - 88019608
TCTTTGGTTATCTAGCTGTATGA MATURE 3 88019536 - 88019646 mmu-miR-9 +
ATAAAGCTAGATAACCGAAAGT MATURESTAR 3 88019575 - 88019684 mmu-miR-9* +
_________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
................CTTTGGTTATCTAGCTGTATG..................................................... read_12739_1_0_0_0_0_0 MATURE 1 33.33 1 100.00 0 0.00 21
................CTTTGGTTATCTAGCTGTATGt.................................................... read_128168_0_0_0_0_1_0 MATURE 1 33.33 0 0.00 1 50.00 t 21
................CTTTGGTTATCTAGCTGTAT...................................................... read_237849_0_0_0_0_0_1 MATURE 1 33.33 0 0.00 1 50.00 20
---------- ---------- ----------
3 1 2
(33.33) (66.67)
*** MATURESTAR ***
_________________________________________________________________________________________
CGGGGTTGGTTGTTATCTTTGGTTATCTAGCTGTATGAGTGGTGTGGAGTCTTCATAAAGCTAGATAACCGAAAGTAAAAATAACCCCA REF 3 88019520 - 88019608
TCTTTGGTTATCTAGCTGTATGA MATURE 3 88019536 - 88019646 mmu-miR-9 +
ATAAAGCTAGATAACCGAAAGT MATURESTAR 3 88019575 - 88019684 mmu-miR-9* +
_________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
........................................................AAAGCTAGATAACCGAAAGTAt............ read_15390_0_3_0_0_0_0 MATURESTAR 3 60.00 3 60.00 0 0 t 21
........................................................AAAGCTAGATAACCGAAAGT.............. read_216777_1_0_0_0_0_0 MATURESTAR 1 20.00 1 20.00 0 0 20
........................................................AAAGCTAGATAACCGAAAGTtt............ read_335298_0_0_1_0_0_0 MATURESTAR 1 20.00 1 20.00 0 0 tt 20
---------- ---------- ----------
5 5 0
(100.00) (0.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 1 2 3 37.50%
MATURESTAR 5 0 5 62.50%
---------- ---------- ----------
6 2 8
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