[BEGIN]
REFERENCE HAIRPIN
***************************************************************************************************
ID : mmu-mir-875
DESCRIPTION : mmu-mir-875 MI0005551 Mus musculus miR-875 stem-loop
CHROMOSOME : 15
SPAN : 35590725 - 35590802
LENGTH : 78
SEQUENCE : TCTGTGGTACTATACCTCAGTTTTATCAGGTGTTCATTAAAATCACCTGAAAATACTGAGGCTATGTTTCACTGAGCA
OVERHANG THRESHOLD : 75%
***************************************************************************************************
TARGET
******************************
CATEGORY : MATURE-3P
ID : mmu-miR-875-3p
ACCID : MI0005551
PARENT : mmu-mir-875
CHROMOSOME : 15
START : 35590725
STOP : 35590802
OFFSET : 46..66
SEQUENCE : CCTGAAAATACTGAGGCTATG
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURE-5P
ID : mmu-miR-875-5p
ACCID : MI0005551
PARENT : mmu-mir-875
CHROMOSOME : 15
START : 35590725
STOP : 35590802
OFFSET : 11..32
SEQUENCE : TATACCTCAGTTTTATCAGGTG
STRAND : -
******************************
*** MATURE-3P ***
______________________________________________________________________________
TCTGTGGTACTATACCTCAGTTTTATCAGGTGTTCATTAAAATCACCTGAAAATACTGAGGCTATGTTTCACTGAGCA REF 15 35590725 - 35590802
CCTGAAAATACTGAGGCTATG MATURE-3P 15 35590771 - 35590868 mmu-miR-875-3p -
TATACCTCAGTTTTATCAGGTG MATURE-5P 15 35590736 - 35590834 mmu-miR-875-5p -
______________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..............................................CTGAAAATACTGAGGCTATGT............ read_204438_1_0_0_0_0_0 MATURE-3P 1 100.00 1 100.00 0 0 21
---------- ---------- ----------
1 1 0
(100.00) (0.00)
*** MATURE-5P ***
______________________________________________________________________________
TCTGTGGTACTATACCTCAGTTTTATCAGGTGTTCATTAAAATCACCTGAAAATACTGAGGCTATGTTTCACTGAGCA REF 15 35590725 - 35590802
CCTGAAAATACTGAGGCTATG MATURE-3P 15 35590771 - 35590868 mmu-miR-875-3p -
TATACCTCAGTTTTATCAGGTG MATURE-5P 15 35590736 - 35590834 mmu-miR-875-5p -
______________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...........ATACCTCAGTTTTATCAGGTGT.............................................. read_377581_0_3_2_0_0_0 MATURE-5P 5 55.56 5 71.43 0 0.00 22
...........ATACCTCAGTTTTATCAGGT................................................ read_328109_0_1_0_0_0_1 MATURE-5P 2 22.22 1 14.29 1 50.00 20
...........ATACCTCAGTTTTATCAGGTG............................................... read_103247_1_0_0_0_0_0 MATURE-5P 1 11.11 1 14.29 0 0.00 21
...........ATACCTCAGTTTTATCAGtTGT.............................................. read_350449_0_0_0_1_0_0 MATURE-5P 1 11.11 0 0.00 1 50.00 18T3
---------- ---------- ----------
9 7 2
(77.78) (22.22)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE-3P 1 0 1 10.00%
MATURE-5P 7 2 9 90.00%
---------- ---------- ----------
8 2 10
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