[BEGIN]
REFERENCE HAIRPIN
******************************************************************************************************
ID : mmu-mir-872
DESCRIPTION : mmu-mir-872 MI0005549 Mus musculus miR-872 stem-loop
CHROMOSOME : 4
SPAN : 94331848 - 94331928
LENGTH : 81
SEQUENCE : AACTTGTTAGAAGGTTACTTGTTAGTTCAGGACCTCATTACTTTCTGCCTGAACTATTGCAGTAGCCTCCTAACTGGTTAT
OVERHANG THRESHOLD : 75%
******************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-872
ACCID : MI0005549
PARENT : mmu-mir-872
CHROMOSOME : 4
START : 94331848
STOP : 94331928
OFFSET : 11..31
SEQUENCE : AAGGTTACTTGTTAGTTCAGG
STRAND : +
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-872*
ACCID : MI0005549
PARENT : mmu-mir-872
CHROMOSOME : 4
START : 94331848
STOP : 94331928
OFFSET : 50..71
SEQUENCE : TGAACTATTGCAGTAGCCTCCT
STRAND : +
******************************
*** MATURE ***
_________________________________________________________________________________
AACTTGTTAGAAGGTTACTTGTTAGTTCAGGACCTCATTACTTTCTGCCTGAACTATTGCAGTAGCCTCCTAACTGGTTAT REF 4 94331848 - 94331928
AAGGTTACTTGTTAGTTCAGG MATURE 4 94331859 - 94331959 mmu-miR-872 +
TGAACTATTGCAGTAGCCTCCT MATURESTAR 4 94331898 - 94331999 mmu-miR-872* +
_________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...........AGGTTACTTGTTAGTTCAGG................................................... read_21290_9_14_6_4_3_5 MATURE 41 33.61 29 34.12 12 32.43 20
...........AGGTTACTTGTTAGTTCAGGA.................................................. read_324776_6_3_7_0_4_3 MATURE 23 18.85 16 18.82 7 18.92 21
...........AGGTTACTTGTTAGTTCAG.................................................... read_323018_2_7_3_2_0_1 MATURE 15 12.30 12 14.12 3 8.11 19
...........AGGTTACTTGTTAGTTCA..................................................... read_66738_4_0_6_0_0_1 MATURE 11 9.02 10 11.76 1 2.70 18
...........AGGTTACTTGTTAGTTCAGGAa................................................. read_141833_2_1_0_1_1_5 MATURE 10 8.20 3 3.53 7 18.92 a 21
...........AGGTTACTTGTTAGTTCAGGt.................................................. read_165845_0_2_1_2_0_0 MATURE 5 4.10 3 3.53 2 5.41 t 20
...........AGGTTACTTGTTAtTTCAGGA.................................................. read_248583_1_0_1_0_1_0 MATURE 3 2.46 2 2.35 1 2.70 13T7
...........AGGTTACTTGTTAGTTCAGt................................................... read_236060_0_2_0_0_0_0 MATURE 2 1.64 2 2.35 0 0.00 t 19
...........AGGTTACTTGTTAGTTCAGaa.................................................. read_258498_1_0_0_0_0_1 MATURE 2 1.64 1 1.18 1 2.70 aa 19
...........AGGTTACTTGTTAGgTCAGGA.................................................. read_283131_1_0_0_0_0_0 MATURE 1 0.82 1 1.18 0 0.00 14G6
...........AGGTTACTTGTTAGTTtAGGAa................................................. read_2652_0_0_1_0_0_0 MATURE 1 0.82 1 1.18 0 0.00 a 16T4
...........AGGTTACTTGTTAGTTCAGGAg................................................. read_81634_0_1_0_0_0_0 MATURE 1 0.82 1 1.18 0 0.00 g 21
...........AGGTTACTTGTTAGTTCAGta.................................................. read_207984_0_0_0_0_0_1 MATURE 1 0.82 0 0.00 1 2.70 ta 19
...........AGGTTACTTGTTAGTTaAGGA.................................................. read_408203_0_0_0_1_0_0 MATURE 1 0.82 0 0.00 1 2.70 16A4
...........AGGTTACTTGTTAGaTCAGGAa................................................. read_105431_1_0_0_0_0_0 MATURE 1 0.82 1 1.18 0 0.00 a 14A6
...........AGGTTACTTGTTAGTTCAGGAt................................................. read_200824_0_1_0_0_0_0 MATURE 1 0.82 1 1.18 0 0.00 t 21
...........AGGTTACTTGTTAGTTCAGGAaa................................................ read_182245_0_1_0_0_0_0 MATURE 1 0.82 1 1.18 0 0.00 aa 21
...........AGGTTACTTGTTAGTcCAGG................................................... read_389577_0_1_0_0_0_0 MATURE 1 0.82 1 1.18 0 0.00 15C4
...........AGGTTACTTGTTAGTTC...................................................... read_218419_0_0_0_0_1_0 MATURE 1 0.82 0 0.00 1 2.70 17
---------- ---------- ----------
122 85 37
(69.67) (30.33)
*** MATURESTAR ***
_________________________________________________________________________________
AACTTGTTAGAAGGTTACTTGTTAGTTCAGGACCTCATTACTTTCTGCCTGAACTATTGCAGTAGCCTCCTAACTGGTTAT REF 4 94331848 - 94331928
AAGGTTACTTGTTAGTTCAGG MATURE 4 94331859 - 94331959 mmu-miR-872 +
TGAACTATTGCAGTAGCCTCCT MATURESTAR 4 94331898 - 94331999 mmu-miR-872* +
_________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..................................................GAACTATTGCAGTAGCCTCCT........... read_356081_10_9_8_1_3_7 MATURESTAR 38 52.78 27 51.92 11 55.00 21
..................................................GAACTATTGCAGTAGCCTCCTt.......... read_113799_1_4_0_1_0_0 MATURESTAR 6 8.33 5 9.62 1 5.00 t 21
..................................................GAACTATTGCAGTAGCCTCC............ read_367971_0_1_3_0_1_0 MATURESTAR 5 6.94 4 7.69 1 5.00 20
..................................................GAACTATTGCAGTAGCCTC............. read_292277_0_1_1_3_0_0 MATURESTAR 5 6.94 2 3.85 3 15.00 19
..................................................GAACTATTGCAGTAGCCT.............. read_23089_2_1_1_0_0_0 MATURESTAR 4 5.56 4 7.69 0 0.00 18
..................................................GAACTATTGCAGTAGCCTCa............ read_51476_1_1_0_0_0_0 MATURESTAR 2 2.78 2 3.85 0 0.00 a 19
..................................................GAACTATTGCAGTAGCCTCCTtt......... read_270764_0_0_0_0_0_2 MATURESTAR 2 2.78 0 0.00 2 10.00 tt 21
..................................................GAACTATTGCAGTAGCCTaa............ read_4527_0_1_0_0_0_0 MATURESTAR 1 1.39 1 1.92 0 0.00 aa 18
..................................................GAACTATTGCAGTAGCCTa............. read_102460_0_0_1_0_0_0 MATURESTAR 1 1.39 1 1.92 0 0.00 a 18
..................................................GAACTATTGCAGTAGCCTCCTtat........ read_77221_0_0_1_0_0_0 MATURESTAR 1 1.39 1 1.92 0 0.00 tat 21
..................................................GAACTATTGCAGTAGCCTCt............ read_233490_0_0_0_1_0_0 MATURESTAR 1 1.39 0 0.00 1 5.00 t 19
..................................................GAACTATTGCAGTAtCCTCCT........... read_285442_1_0_0_0_0_0 MATURESTAR 1 1.39 1 1.92 0 0.00 14T6
..................................................GAACTATTGCAGTAGCtTCCT........... read_71970_0_0_1_0_0_0 MATURESTAR 1 1.39 1 1.92 0 0.00 16T4
..................................................GAACTATTGCgGTAGCCTCCT........... read_194126_0_0_1_0_0_0 MATURESTAR 1 1.39 1 1.92 0 0.00 10G10
..................................................GAACTATTGCAGTAGCCTttt........... read_381756_0_0_0_0_1_0 MATURESTAR 1 1.39 0 0.00 1 5.00 ttt 18
..................................................GAACTATTGCAGTAGaCTCCT........... read_11482_0_0_1_0_0_0 MATURESTAR 1 1.39 1 1.92 0 0.00 15A5
..................................................GAACTATTGCAGTAGCCTCCTAt......... read_147214_0_0_1_0_0_0 MATURESTAR 1 1.39 1 1.92 0 0.00 t 22
---------- ---------- ----------
72 52 20
(72.22) (27.78)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 85 37 122 62.89%
MATURESTAR 52 20 72 37.11%
---------- ---------- ----------
137 57 194
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