[BEGIN]

REFERENCE HAIRPIN
**********************************************************************************************************************
ID                 : mmu-mir-7a-2
DESCRIPTION        : mmu-mir-7a-2 MI0000729 Mus musculus miR-7a-2 stem-loop
CHROMOSOME         : 7
SPAN               : 86033163 - 86033259
LENGTH             : 97
SEQUENCE           : GGTCGGGCCAGCCCCGTTTGGAAGACTAGTGATTTTGTTGTTGTGTCTCTGTATCCAACAACAAGTCCCAGTCTGCCACATGGTGCTGGTCATTTCA
OVERHANG THRESHOLD : 75%
**********************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-7a
ACCID      : MI0000729
PARENT     : mmu-mir-7a-2
CHROMOSOME : 7
START      : 86033163
STOP       : 86033259
OFFSET     : 19..41
SEQUENCE   : TGGAAGACTAGTGATTTTGTTGT
STRAND     : +
******************************



*** MATURE ***
_________________________________________________________________________________________________
GGTCGGGCCAGCCCCGTTTGGAAGACTAGTGATTTTGTTGTTGTGTCTCTGTATCCAACAACAAGTCCCAGTCTGCCACATGGTGCTGGTCATTTCA REF                  7                    86033163 - 86033259  
                  TGGAAGACTAGTGATTTTGTTGT                                                         MATURE               7                    86033182 - 86033300  mmu-miR-7a           +                    
_________________________________________________________________________________________________

                                                                                             -SEQ-                          -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...................GGAAGACTAGTGATTTTGTTGTT........................................................   read_317719_67_72_49_30_48_54       MATURE          320        57.14          188        60.45          132        53.01                        23   
...................GGAAGACTAGTGATTTTGTTGT.........................................................      read_52368_21_16_15_8_6_12       MATURE           78        13.93           52        16.72           26        10.44                        22   
...................GGAAGACTAGTGATTTTGTTtTT........................................................          read_59282_0_4_4_4_5_5       MATURE           22         3.93            8         2.57           14         5.62                      20T2   
...................GGAAGACTAGTGATTTTGTTG..........................................................         read_327553_7_2_4_2_3_0       MATURE           18         3.21           13         4.18            5         2.01                        21   
...................GGAAGACTAGTGATTTTGTTGTTt.......................................................         read_193008_0_2_5_1_3_3       MATURE           14         2.50            7         2.25            7         2.81            t           23   
.......................GACTAGTGATTTTGTTGTT........................................................          read_47691_1_0_0_3_5_5       MATURE           14         2.50            1         0.32           13         5.22                        19   
...................GGAAGACTAGTGATTTTGTTtt.........................................................          read_65964_1_4_1_5_2_1       MATURE           14         2.50            6         1.93            8         3.21           tt           20   
...................GGAAGACTAGTGATTTTGTTGTTa.......................................................          read_57303_1_4_1_1_1_2       MATURE           10         1.79            6         1.93            4         1.61            a           23   
........................ACTAGTGATTTTGTTGTT........................................................          read_71677_0_0_0_0_6_1       MATURE            7         1.25            0         0.00            7         2.81                        18   
...................GGAAGACTAGTGATTTT..............................................................         read_380385_0_0_0_1_2_3       MATURE            6         1.07            0         0.00            6         2.41                        17   
...................GGAAGACTAGTGATTTTGTT...........................................................         read_375561_1_1_1_1_0_1       MATURE            5         0.89            3         0.96            2         0.80                        20   
...................GGAAGACTAGTGATTTTG.............................................................            read_117_2_1_0_0_1_0       MATURE            4         0.71            3         0.96            1         0.40                        18   
...................GGAAGACTAGTGATcTTGTTGTT........................................................          read_69408_3_0_0_0_0_0       MATURE            3         0.54            3         0.96            0         0.00                      14C8   
...................GGAAGACTAGTGATTTTtTTGTT........................................................         read_101584_0_0_0_0_2_1       MATURE            3         0.54            0         0.00            3         1.20                      17T5   
...................GGAAGACTAGTGATTTTGT............................................................         read_129733_0_1_0_0_2_0       MATURE            3         0.54            1         0.32            2         0.80                        19   
...................GGAAGACTAGTGATgTTGTTGTT........................................................          read_79783_3_0_0_0_0_0       MATURE            3         0.54            3         0.96            0         0.00                      14G8   
...................GGAAGACTAGTGATcTTGTTGT.........................................................         read_369720_2_0_0_0_0_0       MATURE            2         0.36            2         0.64            0         0.00                      14C7   
....................GAAGACTAGTGATTTTGTTGTT........................................................         read_344967_0_1_1_0_0_0       MATURE            2         0.36            2         0.64            0         0.00                        22   
.......................GACTAGTGATTTTGTTGT.........................................................         read_139406_0_0_0_1_0_1       MATURE            2         0.36            0         0.00            2         0.80                        18   
...................GGAAGACTAGcGATTTTGTTGTT........................................................          read_41948_0_0_0_1_0_1       MATURE            2         0.36            0         0.00            2         0.80                     10C12   
........................ACTAGTGATTTTGTTGT.........................................................         read_332696_0_0_0_0_0_2       MATURE            2         0.36            0         0.00            2         0.80                        17   
...................GGAAGACTAGTGATTTcGTTGTT........................................................         read_142136_2_0_0_0_0_0       MATURE            2         0.36            2         0.64            0         0.00                      16C6   
.........................CTAGTGATTTTGTTGTT........................................................          read_14785_0_0_0_2_0_0       MATURE            2         0.36            0         0.00            2         0.80                        17   
...................GGAAGACTAGTGATTTTaTTGTT........................................................         read_171334_0_0_1_1_0_0       MATURE            2         0.36            1         0.32            1         0.40                      17A5   
...................GGAAGACTAtTGATTTTGTTGTT........................................................         read_357866_0_0_1_0_0_0       MATURE            1         0.18            1         0.32            0         0.00                      9T13   
...................GGAAGACTAGTGcTTTTGTTGTT........................................................         read_190402_0_0_1_0_0_0       MATURE            1         0.18            1         0.32            0         0.00                     12C10   
...................GGAAGACTAGTGATTTTGTTGa.........................................................         read_223201_0_0_1_0_0_0       MATURE            1         0.18            1         0.32            0         0.00            a           21   
......................AGACTAGTGATTTTGTTGT.........................................................         read_151610_0_0_0_1_0_0       MATURE            1         0.18            0         0.00            1         0.40                        19   
...................GGAAGACTAGTGATTTTGTTGaa........................................................         read_259602_0_1_0_0_0_0       MATURE            1         0.18            1         0.32            0         0.00           aa           21   
...................GGAAGACTAGTGtTTTTGTTGT.........................................................         read_219870_0_0_1_0_0_0       MATURE            1         0.18            1         0.32            0         0.00                      12T9   
...................GGAAGACTAGTGATTTTGTTt..........................................................         read_322991_0_0_0_0_1_0       MATURE            1         0.18            0         0.00            1         0.40            t           20   
...................GGAAGACTAGTGATTTTGTTtTTa.......................................................         read_201137_0_1_0_0_0_0       MATURE            1         0.18            1         0.32            0         0.00            a         20T2   
...................GGAAGACTAGTGATTTTGTTGTTaa......................................................         read_149466_0_0_0_1_0_0       MATURE            1         0.18            0         0.00            1         0.40           aa           23   
...................GGAAGACTAGTGATaTTGTTGTT........................................................         read_318933_1_0_0_0_0_0       MATURE            1         0.18            1         0.32            0         0.00                      14A8   
...................GGAAGACTAGTGATTTTGTTGTaaa......................................................          read_75314_0_0_0_1_0_0       MATURE            1         0.18            0         0.00            1         0.40          aaa           22   
...................GGAAGACTAGTGATTTTGTTGct........................................................         read_320559_0_0_0_0_1_0       MATURE            1         0.18            0         0.00            1         0.40           ct           21   
...................aGAAGACTAGTGATTTTGTTGTT........................................................         read_122950_1_0_0_0_0_0       MATURE            1         0.18            1         0.32            0         0.00                        22   
...................GGAAGACTAGTGATTTTGTTGTTcTGT....................................................         read_202012_0_0_0_0_0_1       MATURE            1         0.18            0         0.00            1         0.40                      23C3   
...................GGAAGACTAGTGATTTTGTg...........................................................         read_104454_0_0_0_1_0_0       MATURE            1         0.18            0         0.00            1         0.40            g           19   
...................GGAAGACTAGTGATTTTGcTGT.........................................................         read_207352_0_0_0_0_1_0       MATURE            1         0.18            0         0.00            1         0.40                      18C3   
...................GGAAGACTAGTGtTTTTGTTGTT........................................................         read_349579_0_0_1_0_0_0       MATURE            1         0.18            1         0.32            0         0.00                     12T10   
...................GGAAGACTAGTGAcTTTGTTGT.........................................................         read_104949_0_0_0_0_1_0       MATURE            1         0.18            0         0.00            1         0.40                      13C8   
...................GGAAGACTAGTGgTTTTGTTGTT........................................................         read_403905_0_1_0_0_0_0       MATURE            1         0.18            1         0.32            0         0.00                     12G10   
...................GGAAaACTAGTGATTTTGTTGTT........................................................         read_106681_0_0_0_0_1_0       MATURE            1         0.18            0         0.00            1         0.40                      4A18   
                                                                                                                                                  ----------                ----------                ----------   
                                                                                                                                                         560                       311                       249                                          
                                                                                                                                                                               (55.54)                   (44.46)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE             311             249             560         100.00%
                     ----------      ----------      ----------                
                            311             249             560                



[END]
