[BEGIN]
REFERENCE HAIRPIN
*********************************************************************************************************************************
ID : mmu-mir-7a-1
DESCRIPTION : mmu-mir-7a-1 MI0000728 Mus musculus miR-7a-1 stem-loop
CHROMOSOME : 13
SPAN : 58494140 - 58494247
LENGTH : 108
SEQUENCE : TTGGATGTTGGCCTAGTTCTGTGTGGAAGACTAGTGATTTTGTTGTTTTTAGATAACTAAAACGACAACAAATCACAGTCTGCCATATGGCACAGGCCACCTCTACAG
OVERHANG THRESHOLD : 75%
*********************************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-7a
ACCID : MI0000728
PARENT : mmu-mir-7a-1
CHROMOSOME : 13
START : 58494140
STOP : 58494247
OFFSET : 24..46
SEQUENCE : TGGAAGACTAGTGATTTTGTTGT
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-7a*
ACCID : MI0000728
PARENT : mmu-mir-7a-1
CHROMOSOME : 13
START : 58494140
STOP : 58494247
OFFSET : 66..87
SEQUENCE : CAACAAATCACAGTCTGCCATA
STRAND : -
******************************
*** MATURE ***
____________________________________________________________________________________________________________
TTGGATGTTGGCCTAGTTCTGTGTGGAAGACTAGTGATTTTGTTGTTTTTAGATAACTAAAACGACAACAAATCACAGTCTGCCATATGGCACAGGCCACCTCTACAG REF 13 58494140 - 58494247
TGGAAGACTAGTGATTTTGTTGT MATURE 13 58494164 - 58494293 mmu-miR-7a -
CAACAAATCACAGTCTGCCATA MATURESTAR 13 58494206 - 58494334 mmu-miR-7a* -
____________________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
........................GGAAGACTAGTGATTTTGTTGTT.............................................................. read_317719_67_72_49_30_48_54 MATURE 320 56.84 188 60.06 132 52.80 23
........................GGAAGACTAGTGATTTTGTTGT............................................................... read_52368_21_16_15_8_6_12 MATURE 78 13.85 52 16.61 26 10.40 22
........................GGAAGACTAGTGATTTTGTTtTT.............................................................. read_59282_0_4_4_4_5_5 MATURE 22 3.91 8 2.56 14 5.60 20T2
........................GGAAGACTAGTGATTTTGTTG................................................................ read_327553_7_2_4_2_3_0 MATURE 18 3.20 13 4.15 5 2.00 21
........................GGAAGACTAGTGATTTTGTTGTTT............................................................. read_193008_0_2_5_1_3_3 MATURE 14 2.49 7 2.24 7 2.80 24
............................GACTAGTGATTTTGTTGTT.............................................................. read_47691_1_0_0_3_5_5 MATURE 14 2.49 1 0.32 13 5.20 19
........................GGAAGACTAGTGATTTTGTTtt............................................................... read_65964_1_4_1_5_2_1 MATURE 14 2.49 6 1.92 8 3.20 tt 20
........................GGAAGACTAGTGATTTTGTTGTTa............................................................. read_57303_1_4_1_1_1_2 MATURE 10 1.78 6 1.92 4 1.60 a 23
.............................ACTAGTGATTTTGTTGTT.............................................................. read_71677_0_0_0_0_6_1 MATURE 7 1.24 0 0.00 7 2.80 18
........................GGAAGACTAGTGATTTT.................................................................... read_380385_0_0_0_1_2_3 MATURE 6 1.07 0 0.00 6 2.40 17
........................GGAAGACTAGTGATTTTGTT................................................................. read_375561_1_1_1_1_0_1 MATURE 5 0.89 3 0.96 2 0.80 20
........................GGAAGACTAGTGATTTTG................................................................... read_117_2_1_0_0_1_0 MATURE 4 0.71 3 0.96 1 0.40 18
........................GGAAGACTAGTGATTTTtTTGTT.............................................................. read_101584_0_0_0_0_2_1 MATURE 3 0.53 0 0.00 3 1.20 17T5
........................GGAAGACTAGTGATgTTGTTGTT.............................................................. read_79783_3_0_0_0_0_0 MATURE 3 0.53 3 0.96 0 0.00 14G8
........................GGAAGACTAGTGATTTTGT.................................................................. read_129733_0_1_0_0_2_0 MATURE 3 0.53 1 0.32 2 0.80 19
........................GGAAGACTAGTGATcTTGTTGTT.............................................................. read_69408_3_0_0_0_0_0 MATURE 3 0.53 3 0.96 0 0.00 14C8
.........................GAAGACTAGTGATTTTGTTGTT.............................................................. read_344967_0_1_1_0_0_0 MATURE 2 0.36 2 0.64 0 0.00 22
............................GACTAGTGATTTTGTTGT............................................................... read_139406_0_0_0_1_0_1 MATURE 2 0.36 0 0.00 2 0.80 18
........................GGAAGACTAGTGATTTcGTTGTT.............................................................. read_142136_2_0_0_0_0_0 MATURE 2 0.36 2 0.64 0 0.00 16C6
........................GGAAGACTAGTGATcTTGTTGT............................................................... read_369720_2_0_0_0_0_0 MATURE 2 0.36 2 0.64 0 0.00 14C7
........................GGAAGACTAGcGATTTTGTTGTT.............................................................. read_41948_0_0_0_1_0_1 MATURE 2 0.36 0 0.00 2 0.80 10C12
..............................CTAGTGATTTTGTTGTT.............................................................. read_14785_0_0_0_2_0_0 MATURE 2 0.36 0 0.00 2 0.80 17
.............................ACTAGTGATTTTGTTGT............................................................... read_332696_0_0_0_0_0_2 MATURE 2 0.36 0 0.00 2 0.80 17
........................GGAAGACTAGTGATTTTaTTGTT.............................................................. read_171334_0_0_1_1_0_0 MATURE 2 0.36 1 0.32 1 0.40 17A5
........................GGAAGACTAGTGtTTTTGTTGTT.............................................................. read_349579_0_0_1_0_0_0 MATURE 1 0.18 1 0.32 0 0.00 12T10
.........................GAAGACTAGTGATTTTGTTGTTT............................................................. read_328659_1_0_0_0_0_0 MATURE 1 0.18 1 0.32 0 0.00 23
........................GGAAGACTAGTGcTTTTGTTGTT.............................................................. read_190402_0_0_1_0_0_0 MATURE 1 0.18 1 0.32 0 0.00 12C10
............................GACTAGTGATTTTGTTGTTT............................................................. read_29145_1_0_0_0_0_0 MATURE 1 0.18 1 0.32 0 0.00 20
........................GGAAGACTAGTGATTTTGTTGa............................................................... read_223201_0_0_1_0_0_0 MATURE 1 0.18 1 0.32 0 0.00 a 21
...........................AGACTAGTGATTTTGTTGT............................................................... read_151610_0_0_0_1_0_0 MATURE 1 0.18 0 0.00 1 0.40 19
........................GGAAGACTAGTGATTTTGTTGaa.............................................................. read_259602_0_1_0_0_0_0 MATURE 1 0.18 1 0.32 0 0.00 aa 21
........................GGAAGACTAGTGATTTTGTTt................................................................ read_322991_0_0_0_0_1_0 MATURE 1 0.18 0 0.00 1 0.40 t 20
........................GGAAGACTAGTGtTTTTGTTGT............................................................... read_219870_0_0_1_0_0_0 MATURE 1 0.18 1 0.32 0 0.00 12T9
........................GGAAGACTAtTGATTTTGTTGTT.............................................................. read_357866_0_0_1_0_0_0 MATURE 1 0.18 1 0.32 0 0.00 9T13
........................GGAAGACTAGTGATTTTGTTGct.............................................................. read_320559_0_0_0_0_1_0 MATURE 1 0.18 0 0.00 1 0.40 ct 21
........................GGAAGACTAGTGATTTTGTTGTaaa............................................................ read_75314_0_0_0_1_0_0 MATURE 1 0.18 0 0.00 1 0.40 aaa 22
........................GGAAGACTAGTGgTTTTGTTGTT.............................................................. read_403905_0_1_0_0_0_0 MATURE 1 0.18 1 0.32 0 0.00 12G10
........................GGAAGACTAGTGATTTTGTTtTTa............................................................. read_201137_0_1_0_0_0_0 MATURE 1 0.18 1 0.32 0 0.00 a 20T2
........................GGAAGACTAGTGATTTTGTTGTTaa............................................................ read_149466_0_0_0_1_0_0 MATURE 1 0.18 0 0.00 1 0.40 aa 23
........................GGAAGACTAGTGATaTTGTTGTT.............................................................. read_318933_1_0_0_0_0_0 MATURE 1 0.18 1 0.32 0 0.00 14A8
..............................CTAGTGATTTTGTTGTTT............................................................. read_64253_0_0_0_0_0_1 MATURE 1 0.18 0 0.00 1 0.40 18
........................aGAAGACTAGTGATTTTGTTGTT.............................................................. read_122950_1_0_0_0_0_0 MATURE 1 0.18 1 0.32 0 0.00 22
........................GGAAGACTAGTGATTTTGTTGTTctgt.......................................................... read_202012_0_0_0_0_0_1 MATURE 1 0.18 0 0.00 1 0.40 ctgt 23
........................GGAAGACTAGTGATTTTGTg................................................................. read_104454_0_0_0_1_0_0 MATURE 1 0.18 0 0.00 1 0.40 g 19
........................GGAAGACTAGTGATTTTGcTGT............................................................... read_207352_0_0_0_0_1_0 MATURE 1 0.18 0 0.00 1 0.40 18C3
........................GGAAGACTAGTGAcTTTGTTGT............................................................... read_104949_0_0_0_0_1_0 MATURE 1 0.18 0 0.00 1 0.40 13C8
........................GGAAaACTAGTGATTTTGTTGTT.............................................................. read_106681_0_0_0_0_1_0 MATURE 1 0.18 0 0.00 1 0.40 4A18
---------- ---------- ----------
563 313 250
(55.60) (44.40)
*** MATURESTAR ***
____________________________________________________________________________________________________________
TTGGATGTTGGCCTAGTTCTGTGTGGAAGACTAGTGATTTTGTTGTTTTTAGATAACTAAAACGACAACAAATCACAGTCTGCCATATGGCACAGGCCACCTCTACAG REF 13 58494140 - 58494247
TGGAAGACTAGTGATTTTGTTGT MATURE 13 58494164 - 58494293 mmu-miR-7a -
CAACAAATCACAGTCTGCCATA MATURESTAR 13 58494206 - 58494334 mmu-miR-7a* -
____________________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..................................................................AACAAATCACAGTCTGCCATA...................... read_63955_32_36_29_4_9_11 MATURESTAR 121 37.46 97 37.31 24 38.10 21
..................................................................AACAAATCACAGTCTGCCAT....................... read_242009_26_18_28_4_3_6 MATURESTAR 85 26.32 72 27.69 13 20.63 20
...................................................................ACAAATCACAGTCTGCCATA...................... read_173191_4_12_9_1_0_1 MATURESTAR 27 8.36 25 9.62 2 3.17 20
..................................................................AACAAATCACAGTCTGCCATt...................... read_67526_3_8_5_1_0_1 MATURESTAR 18 5.57 16 6.15 2 3.17 t 20
..................................................................AACAAATCACAGTCTGCCATAT..................... read_198189_5_5_3_2_2_0 MATURESTAR 17 5.26 13 5.00 4 6.35 22
..................................................................AACAAATCACAGTCTGCCA........................ read_384662_5_3_1_2_2_0 MATURESTAR 13 4.02 9 3.46 4 6.35 19
..................................................................AACAAATCACAGTCTGCCATAa..................... read_169993_1_3_1_0_3_2 MATURESTAR 10 3.10 5 1.92 5 7.94 a 21
...................................................................ACAAATCACAGTCTGCCAT....................... read_358332_5_0_0_1_1_0 MATURESTAR 7 2.17 5 1.92 2 3.17 19
..................................................................AACAAATCACAGTCTGCC......................... read_23191_1_1_0_0_0_1 MATURESTAR 3 0.93 2 0.77 1 1.59 18
..................................................................AACAAATCACAGTCTGCCAa....................... read_36080_2_1_0_0_0_0 MATURESTAR 3 0.93 3 1.15 0 0.00 a 19
...................................................................ACAAATCACAGTCTGCCATAa..................... read_371799_1_0_0_0_1_1 MATURESTAR 3 0.93 1 0.38 2 3.17 a 20
...................................................................ACAAATCACAGTCTGCCATAT..................... read_211197_1_1_0_0_0_0 MATURESTAR 2 0.62 2 0.77 0 0.00 21
..................................................................AACAAATCACAGgCTGCCATA...................... read_83572_0_0_0_0_1_0 MATURESTAR 1 0.31 0 0.00 1 1.59 12G8
..................................................................AACAAATCACAGTCTtCCAT....................... read_238975_0_1_0_0_0_0 MATURESTAR 1 0.31 1 0.38 0 0.00 15T4
..................................................................AACAAATCACAGTCTGCCAgag..................... read_290595_0_1_0_0_0_0 MATURESTAR 1 0.31 1 0.38 0 0.00 gag 19
..................................................................AACAAATCACAGTCTGCCtTA...................... read_223040_0_0_1_0_0_0 MATURESTAR 1 0.31 1 0.38 0 0.00 18T2
................................................................ACAACAAATCACAGTCTGCCAa....................... read_328143_0_0_0_1_0_0 MATURESTAR 1 0.31 0 0.00 1 1.59 a 21
..................................................................AACAAATCACAGTCaGCCATA...................... read_41047_1_0_0_0_0_0 MATURESTAR 1 0.31 1 0.38 0 0.00 14A6
...................................................................ACAAATCACAGTCTGCCATt...................... read_269606_0_0_1_0_0_0 MATURESTAR 1 0.31 1 0.38 0 0.00 t 19
...................................................................ACAAATCACAGTCTGCC......................... read_55426_0_0_0_0_1_0 MATURESTAR 1 0.31 0 0.00 1 1.59 17
...................................................................ACAAATCACAGTCTGCCAa....................... read_140986_0_0_0_0_0_1 MATURESTAR 1 0.31 0 0.00 1 1.59 a 18
..................................................................cACAAATCACAGTCTGCCATA...................... read_252788_1_0_0_0_0_0 MATURESTAR 1 0.31 1 0.38 0 0.00 20
...................................................................ACAAATCACAGTCTGCCATca..................... read_119377_1_0_0_0_0_0 MATURESTAR 1 0.31 1 0.38 0 0.00 ca 19
....................................................................CAAATCACAGTCTGCCATA...................... read_267870_1_0_0_0_0_0 MATURESTAR 1 0.31 1 0.38 0 0.00 19
..................................................................AACAAATCACAGTCTGtCATA...................... read_123921_0_1_0_0_0_0 MATURESTAR 1 0.31 1 0.38 0 0.00 16T4
...................................................................ACAAATCACAGTCTGCCtTAT..................... read_126605_0_0_1_0_0_0 MATURESTAR 1 0.31 1 0.38 0 0.00 17T3
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323 260 63
(80.50) (19.50)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
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MATURE 313 250 563 63.54%
MATURESTAR 260 63 323 36.46%
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573 313 886
[END]