[BEGIN]

REFERENCE HAIRPIN
****************************************************************************************************
ID                 : mmu-mir-700
DESCRIPTION        : mmu-mir-700 MI0004684 Mus musculus miR-700 stem-loop
CHROMOSOME         : 4
SPAN               : 134972470 - 134972548
LENGTH             : 79
SEQUENCE           : TTCACTGGGAGTAAGGCTCCTTCCTGTGCTTGCAGGGGAGAAATACGAACTGCACGCGGGAACCGAGTCCACCCCCAGT
OVERHANG THRESHOLD : 75%
****************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-700
ACCID      : MI0004684
PARENT     : mmu-mir-700
CHROMOSOME : 4
START      : 134972470
STOP       : 134972548
OFFSET     : 53..73
SEQUENCE   : CACGCGGGAACCGAGTCCACC
STRAND     : -
******************************



*** MATURE ***
_______________________________________________________________________________
TTCACTGGGAGTAAGGCTCCTTCCTGTGCTTGCAGGGGAGAAATACGAACTGCACGCGGGAACCGAGTCCACCCCCAGT REF                  4                    134972470 - 134972548 
                                                    CACGCGGGAACCGAGTCCACC       MATURE               4                    134972523 - 134972621 mmu-miR-700          -                    
_______________________________________________________________________________

                                                                           -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.....................................................ACGCGGGAACCGAGTCCACC.......   read_382561_1_2_0_0_1_0       MATURE            4        40.00            3        37.50            1        50.00                        20   
.....................................................ACGCGGGAACCGAGTCCACCtat....    read_50345_0_1_0_0_1_0       MATURE            2        20.00            1        12.50            1        50.00          tat           20   
.....................................................ACGCGGGAACCGAGTCCACCagt....   read_124531_1_0_0_0_0_0       MATURE            1        10.00            1        12.50            0         0.00          agt           20   
.....................................................ACGCGGGAACCGAGTCCAt........    read_57834_1_0_0_0_0_0       MATURE            1        10.00            1        12.50            0         0.00            t           18   
.....................................................ACGCGGGAACCGAGTCCACCatt....   read_246981_0_0_1_0_0_0       MATURE            1        10.00            1        12.50            0         0.00          att           20   
.....................................................ACGCGGGAACCGAGTCCACCt......   read_350566_0_0_1_0_0_0       MATURE            1        10.00            1        12.50            0         0.00            t           20   
                                                                                                                          ----------                ----------                ----------   
                                                                                                                                  10                         8                         2                                          
                                                                                                                                                       (80.00)                   (20.00)                                       




*** OTHER ***
_______________________________________________________________________________
TTCACTGGGAGTAAGGCTCCTTCCTGTGCTTGCAGGGGAGAAATACGAACTGCACGCGGGAACCGAGTCCACCCCCAGT REF                  4                    134972470 - 134972548 
                                                    CACGCGGGAACCGAGTCCACC       MATURE               4                    134972523 - 134972621 mmu-miR-700          -                    
_______________________________________________________________________________

                                                                           -SEQ-                       -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
............AAGGCTCCTTCCTGTGCTTGC...............................................       read_34861_1_3_0_1_0_1        OTHER            6        35.29            4        50.00            2        22.22                        21   
............AAGGCTCCTTCCTGTGCTTGCAGt............................................       read_67806_1_0_1_0_0_0        OTHER            2        11.76            2        25.00            0         0.00            t           23   
............AAGGCTCCTTCCTGTGCTT.................................................      read_318896_0_0_1_0_0_1        OTHER            2        11.76            1        12.50            1        11.11                        19   
............AAGGCTCCTTaCTGTGCTTGCAGt............................................       read_55673_0_0_0_0_0_1        OTHER            1         5.88            0         0.00            1        11.11            t        10A12   
............AAGGCTCCTTCCTGTGCTTG................................................      read_105803_0_1_0_0_0_0        OTHER            1         5.88            1        12.50            0         0.00                        20   
............AAGGCTCCTTCCTGTGCTTGt...............................................       read_41789_0_0_0_0_1_0        OTHER            1         5.88            0         0.00            1        11.11            t           20   
............AAGGCTCCTTCCTGTGCT..................................................      read_394734_0_0_0_1_0_0        OTHER            1         5.88            0         0.00            1        11.11                        18   
............AAGGCTCCTTCCTGTGCTTGCt..............................................      read_396852_0_0_0_1_0_0        OTHER            1         5.88            0         0.00            1        11.11            t           21   
............AAGGCTCCTTCCcGTGCTTGCAGt............................................        read_1657_0_0_0_0_1_0        OTHER            1         5.88            0         0.00            1        11.11            t        12C10   
............AAGGCTCCTTCCTGTGCTTGCAG.............................................         read_975_0_0_0_1_0_0        OTHER            1         5.88            0         0.00            1        11.11                        23   
                                                                                                                             ----------                ----------                ----------   
                                                                                                                                     17                         8                         9                                          
                                                                                                                                                          (47.06)                   (52.94)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE               8               2              10          37.04%
          OTHER               8               9              17          62.96%
                     ----------      ----------      ----------                
                             16              11              27                



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