[BEGIN]
REFERENCE HAIRPIN
****************************************************************************************************
ID : mmu-mir-700
DESCRIPTION : mmu-mir-700 MI0004684 Mus musculus miR-700 stem-loop
CHROMOSOME : 4
SPAN : 134972470 - 134972548
LENGTH : 79
SEQUENCE : TTCACTGGGAGTAAGGCTCCTTCCTGTGCTTGCAGGGGAGAAATACGAACTGCACGCGGGAACCGAGTCCACCCCCAGT
OVERHANG THRESHOLD : 75%
****************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-700
ACCID : MI0004684
PARENT : mmu-mir-700
CHROMOSOME : 4
START : 134972470
STOP : 134972548
OFFSET : 53..73
SEQUENCE : CACGCGGGAACCGAGTCCACC
STRAND : -
******************************
*** MATURE ***
_______________________________________________________________________________
TTCACTGGGAGTAAGGCTCCTTCCTGTGCTTGCAGGGGAGAAATACGAACTGCACGCGGGAACCGAGTCCACCCCCAGT REF 4 134972470 - 134972548
CACGCGGGAACCGAGTCCACC MATURE 4 134972523 - 134972621 mmu-miR-700 -
_______________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.....................................................ACGCGGGAACCGAGTCCACC....... read_382561_1_2_0_0_1_0 MATURE 4 40.00 3 37.50 1 50.00 20
.....................................................ACGCGGGAACCGAGTCCACCtat.... read_50345_0_1_0_0_1_0 MATURE 2 20.00 1 12.50 1 50.00 tat 20
.....................................................ACGCGGGAACCGAGTCCACCagt.... read_124531_1_0_0_0_0_0 MATURE 1 10.00 1 12.50 0 0.00 agt 20
.....................................................ACGCGGGAACCGAGTCCAt........ read_57834_1_0_0_0_0_0 MATURE 1 10.00 1 12.50 0 0.00 t 18
.....................................................ACGCGGGAACCGAGTCCACCatt.... read_246981_0_0_1_0_0_0 MATURE 1 10.00 1 12.50 0 0.00 att 20
.....................................................ACGCGGGAACCGAGTCCACCt...... read_350566_0_0_1_0_0_0 MATURE 1 10.00 1 12.50 0 0.00 t 20
---------- ---------- ----------
10 8 2
(80.00) (20.00)
*** OTHER ***
_______________________________________________________________________________
TTCACTGGGAGTAAGGCTCCTTCCTGTGCTTGCAGGGGAGAAATACGAACTGCACGCGGGAACCGAGTCCACCCCCAGT REF 4 134972470 - 134972548
CACGCGGGAACCGAGTCCACC MATURE 4 134972523 - 134972621 mmu-miR-700 -
_______________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
............AAGGCTCCTTCCTGTGCTTGC............................................... read_34861_1_3_0_1_0_1 OTHER 6 35.29 4 50.00 2 22.22 21
............AAGGCTCCTTCCTGTGCTTGCAGt............................................ read_67806_1_0_1_0_0_0 OTHER 2 11.76 2 25.00 0 0.00 t 23
............AAGGCTCCTTCCTGTGCTT................................................. read_318896_0_0_1_0_0_1 OTHER 2 11.76 1 12.50 1 11.11 19
............AAGGCTCCTTaCTGTGCTTGCAGt............................................ read_55673_0_0_0_0_0_1 OTHER 1 5.88 0 0.00 1 11.11 t 10A12
............AAGGCTCCTTCCTGTGCTTG................................................ read_105803_0_1_0_0_0_0 OTHER 1 5.88 1 12.50 0 0.00 20
............AAGGCTCCTTCCTGTGCTTGt............................................... read_41789_0_0_0_0_1_0 OTHER 1 5.88 0 0.00 1 11.11 t 20
............AAGGCTCCTTCCTGTGCT.................................................. read_394734_0_0_0_1_0_0 OTHER 1 5.88 0 0.00 1 11.11 18
............AAGGCTCCTTCCTGTGCTTGCt.............................................. read_396852_0_0_0_1_0_0 OTHER 1 5.88 0 0.00 1 11.11 t 21
............AAGGCTCCTTCCcGTGCTTGCAGt............................................ read_1657_0_0_0_0_1_0 OTHER 1 5.88 0 0.00 1 11.11 t 12C10
............AAGGCTCCTTCCTGTGCTTGCAG............................................. read_975_0_0_0_1_0_0 OTHER 1 5.88 0 0.00 1 11.11 23
---------- ---------- ----------
17 8 9
(47.06) (52.94)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 8 2 10 37.04%
OTHER 8 9 17 62.96%
---------- ---------- ----------
16 11 27
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