[BEGIN]
REFERENCE HAIRPIN
**********************************************************************************************************************************
ID : mmu-mir-689-1
DESCRIPTION : mmu-mir-689-1 MI0004654 Mus musculus miR-689-1 stem-loop
CHROMOSOME : 1
SPAN : 169270532 - 169270640
LENGTH : 109
SEQUENCE : CCCGGATAGCCGGGTCCCCGTCCGTCCCCGCTCGGCGGGGTCCCCGCGTCCTCCCCGCAGCGGCGCGGGGTCTCCCCCCGCCGGGCGTCGGGACCGGGATCCGGTGCGG
OVERHANG THRESHOLD : 75%
**********************************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-689
ACCID : MI0004654
PARENT : mmu-mir-689-1
CHROMOSOME : 1
START : 169270532
STOP : 169270640
OFFSET : 23..43
SEQUENCE : CGTCCCCGCTCGGCGGGGTCC
STRAND : -
******************************
*** MATURE ***
_____________________________________________________________________________________________________________
CCCGGATAGCCGGGTCCCCGTCCGTCCCCGCTCGGCGGGGTCCCCGCGTCCTCCCCGCAGCGGCGCGGGGTCTCCCCCCGCCGGGCGTCGGGACCGGGATCCGGTGCGG REF 1 169270532 - 169270640
CGTCCCCGCTCGGCGGGGTCC MATURE 1 169270555 - 169270683 mmu-miR-689 -
_____________________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..............................CTCGGCGGGGTCCCCGC............................................................... read_73051_0_0_0_2_0_0 MATURE 2 13.33 0 0.00 2 15.38 17
.............................GCTCGGCGGGGTCCCCGCGT............................................................. read_46558_0_1_0_1_0_0 MATURE 2 13.33 1 50.00 1 7.69 20
.........................CCCCGCTCGGCGGGGTC.................................................................... read_231269_0_0_0_1_0_1 MATURE 2 13.33 0 0.00 2 15.38 17
...........GGGTCCCCGTCCGTCCCCGCTCGG........................................................................... read_329945_0_0_0_1_0_0 MATURE 1 6.67 0 0.00 1 7.69 24
............................CGCTCGGCGGGGTaCCCGCGT............................................................. read_166663_0_0_0_0_0_1 MATURE 1 6.67 0 0.00 1 7.69 13A7
...........GGGTCCCCGTCCGTCCC.................................................................................. read_32790_0_0_0_0_0_1 MATURE 1 6.67 0 0.00 1 7.69 17
.............................GCTCGGCGGGGTCCCCGCGTC............................................................ read_258181_0_1_0_0_0_0 MATURE 1 6.67 1 50.00 0 0.00 21
.............GTCCCCGTCCGTCCCCGCTC............................................................................. read_264214_0_0_0_0_1_0 MATURE 1 6.67 0 0.00 1 7.69 20
...................GTCCGTCCCCGCTCGGC.......................................................................... read_193453_0_0_0_0_0_1 MATURE 1 6.67 0 0.00 1 7.69 17
...................GTCCGTCCCCGCTCGGCGGGG...................................................................... read_408620_0_0_0_0_1_0 MATURE 1 6.67 0 0.00 1 7.69 21
...........................CCGCTCGGCGGGGTCCCCG................................................................ read_75786_0_0_0_0_0_1 MATURE 1 6.67 0 0.00 1 7.69 19
..........................CCCGCTCGGCGGGGTCC................................................................... read_252251_0_0_0_0_0_1 MATURE 1 6.67 0 0.00 1 7.69 17
---------- ---------- ----------
15 2 13
(13.33) (86.67)
*** OTHER ***
_____________________________________________________________________________________________________________
CCCGGATAGCCGGGTCCCCGTCCGTCCCCGCTCGGCGGGGTCCCCGCGTCCTCCCCGCAGCGGCGCGGGGTCTCCCCCCGCCGGGCGTCGGGACCGGGATCCGGTGCGG REF 1 169270532 - 169270640
CGTCCCCGCTCGGCGGGGTCC MATURE 1 169270555 - 169270683 mmu-miR-689 -
_____________________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.....ATAGCCGGGTCCCCGTC........................................................................................ read_325898_1_0_0_0_0_1 OTHER 2 9.09 1 25.00 1 5.56 17
............................................................................CCCGCCGGGCGTCGGGACCG.............. read_390054_0_0_0_1_1_0 OTHER 2 9.09 0 0.00 2 11.11 20
............................................................................CCCGCCGGGCGTCGGGACC............... read_293211_0_0_0_1_1_0 OTHER 2 9.09 0 0.00 2 11.11 19
....GATAGCCGGGTCCCCGT......................................................................................... read_20150_1_0_0_1_0_0 OTHER 2 9.09 1 25.00 1 5.56 17
..............................................................................CGCCGGGCGTCGGGACC............... read_373782_0_0_0_0_1_0 OTHER 1 4.55 0 0.00 1 5.56 17
..................................................................GGGGTCTCCCCCCGCCGGGCGT...................... read_256358_0_0_0_0_0_1 OTHER 1 4.55 0 0.00 1 5.56 22
................................................................................CCGGGCGTCGGGACCGGG............ read_299194_0_0_0_0_0_1 OTHER 1 4.55 0 0.00 1 5.56 18
.....ATAGCCGGGTCCCCGTCC....................................................................................... read_153492_0_0_0_1_0_0 OTHER 1 4.55 0 0.00 1 5.56 18
................................................................................CCGGGCGTCGGGACCGG............. read_66873_0_0_0_1_0_0 OTHER 1 4.55 0 0.00 1 5.56 17
....................................................................GGTCTCCCCCCGCCGGGCGT...................... read_243662_0_0_0_1_0_0 OTHER 1 4.55 0 0.00 1 5.56 20
.......AGCCGGGTCCCCGTCCGTCCC.................................................................................. read_290875_1_0_0_0_0_0 OTHER 1 4.55 1 25.00 0 0.00 21
.....ATAGCCGGGTCCCCGTCCct..................................................................................... read_225164_0_0_0_1_0_0 OTHER 1 4.55 0 0.00 1 5.56 ct 18
CCCGGATAGCCGGGTCCCCGTCC....................................................................................... read_225358_0_1_0_0_0_0 OTHER 1 4.55 1 25.00 0 0.00 23
....GATAGCCGGGTCCCCGTC........................................................................................ read_90400_0_0_0_0_1_0 OTHER 1 4.55 0 0.00 1 5.56 18
..CGGATAGCCGGcTCCCCGTCCG...................................................................................... read_159854_0_0_0_0_1_0 OTHER 1 4.55 0 0.00 1 5.56 11C10
...............................................................................GCCGGGCGTCGGGACCGGGgTCCGGT..... read_292213_0_0_0_0_1_0 OTHER 1 4.55 0 0.00 1 5.56 19G6
.............................................................................CCGCCGGGCGTCGGGACC............... read_306106_0_0_0_1_0_0 OTHER 1 4.55 0 0.00 1 5.56 18
.......AGCCGGGTCCCCGTCCG...................................................................................... read_214810_0_0_0_0_1_0 OTHER 1 4.55 0 0.00 1 5.56 17
---------- ---------- ----------
22 4 18
(18.18) (81.82)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 2 13 15 40.54%
OTHER 4 18 22 59.46%
---------- ---------- ----------
6 31 37
[END]