[BEGIN]
REFERENCE HAIRPIN
**************************************************************************************************************
ID : mmu-mir-676
DESCRIPTION : mmu-mir-676 MI0005003 Mus musculus miR-676 stem-loop
CHROMOSOME : X
SPAN : 97576436 - 97576524
LENGTH : 89
SEQUENCE : CTTTGCCTGAATGCATGACTCTACAACCTTAGGACTTGCAGAATTAAAGGAATGCCGTCCTGAGGTTGTTGAGCTGTGCGTTTCTGGGC
OVERHANG THRESHOLD : 75%
**************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-676
ACCID : MI0005003
PARENT : mmu-mir-676
CHROMOSOME : X
START : 97576436
STOP : 97576524
OFFSET : 55..75
SEQUENCE : CCGTCCTGAGGTTGTTGAGCT
STRAND : +
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-676*
ACCID : MI0005003
PARENT : mmu-mir-676
CHROMOSOME : X
START : 97576436
STOP : 97576524
OFFSET : 18..39
SEQUENCE : ACTCTACAACCTTAGGACTTGC
STRAND : +
******************************
*** MATURE ***
_________________________________________________________________________________________
CTTTGCCTGAATGCATGACTCTACAACCTTAGGACTTGCAGAATTAAAGGAATGCCGTCCTGAGGTTGTTGAGCTGTGCGTTTCTGGGC REF X 97576436 - 97576524
CCGTCCTGAGGTTGTTGAGCT MATURE X 97576491 - 97576599 mmu-miR-676 +
ACTCTACAACCTTAGGACTTGC MATURESTAR X 97576454 - 97576563 mmu-miR-676* +
_________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.......................................................CGTCCTGAGGTTGTTGAGCTt.............. read_141221_0_0_1_0_0_0 MATURE 1 20.00 1 33.33 0 0.00 t 20
.......................................................CGTCCTGAGGTTGTTGAGCT............... read_83488_0_1_0_0_0_0 MATURE 1 20.00 1 33.33 0 0.00 20
.......................................................CGTCCTGAGGTTGTTGAGCTtt............. read_204287_0_0_0_0_0_1 MATURE 1 20.00 0 0.00 1 50.00 tt 20
.......................................................CGTCCTGAGGTTGTTGAGCTaa............. read_260031_0_1_0_0_0_0 MATURE 1 20.00 1 33.33 0 0.00 aa 20
.......................................................CGTCCTGAGGTTGTTGAGCTta............. read_64758_0_0_0_0_0_1 MATURE 1 20.00 0 0.00 1 50.00 ta 20
---------- ---------- ----------
5 3 2
(60.00) (40.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 3 2 5 100.00%
---------- ---------- ----------
3 2 5
[END]