[BEGIN]

REFERENCE HAIRPIN
*************************************************************************************************************************
ID                 : mmu-mir-674
DESCRIPTION        : mmu-mir-674 MI0004611 Mus musculus mir-674 stem-loop
CHROMOSOME         : 2
SPAN               : 117010863 - 117010962
LENGTH             : 100
SEQUENCE           : GGCCTAGTCATCACCCTGAGCCTTGCACTGAGATGGGAGTGGTGTAAGGCTCAGGTATGCACAGCTCCCATCTCAGAACAAGGCTCGGGTGTGCTCAGCT
OVERHANG THRESHOLD : 75%
*************************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-674
ACCID      : MI0004611
PARENT     : mmu-mir-674
CHROMOSOME : 2
START      : 117010863
STOP       : 117010962
OFFSET     : 25..46
SEQUENCE   : GCACTGAGATGGGAGTGGTGTA
STRAND     : +
******************************


TARGET
******************************
CATEGORY   : MATURESTAR
ID         : mmu-miR-674*
ACCID      : MI0004611
PARENT     : mmu-mir-674
CHROMOSOME : 2
START      : 117010863
STOP       : 117010962
OFFSET     : 60..81
SEQUENCE   : CACAGCTCCCATCTCAGAACAA
STRAND     : +
******************************



*** MATURE ***
____________________________________________________________________________________________________
GGCCTAGTCATCACCCTGAGCCTTGCACTGAGATGGGAGTGGTGTAAGGCTCAGGTATGCACAGCTCCCATCTCAGAACAAGGCTCGGGTGTGCTCAGCT REF                  2                    117010863 - 117010962 
                        GCACTGAGATGGGAGTGGTGTA                                                       MATURE               2                    117010888 - 117011008 mmu-miR-674          +                    
                                                           CACAGCTCCCATCTCAGAACAA                    MATURESTAR           2                    117010923 - 117011043 mmu-miR-674*         +                    
____________________________________________________________________________________________________

                                                                                                -SEQ-                             -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.........................CACTGAGATGGGAGTGGTGTAt......................................................       read_40289_66_66_36_16_25_22       MATURE          231        30.20          168        33.73           63        23.60            t           21   
.........................CACTGAGATGGGAGTGGTGT........................................................      read_340732_52_40_19_22_29_15       MATURE          177        23.14          111        22.29           66        24.72                        20   
.........................CACTGAGATGGGAGTGGTGTAA......................................................        read_295913_22_26_14_5_8_13       MATURE           88        11.50           62        12.45           26         9.74                        22   
.........................CACTGAGATGGGAGTGGTGTA.......................................................            read_306353_9_9_7_9_9_7       MATURE           50         6.54           25         5.02           25         9.36                        21   
........................GCACTGAGATGGGAGTGGTGT........................................................            read_375417_4_5_5_3_4_3       MATURE           24         3.14           14         2.81           10         3.75                        21   
.........................CACTGAGATGGGAGTGGTGTAg......................................................             read_82801_4_5_2_1_2_3       MATURE           17         2.22           11         2.21            6         2.25            g           21   
.........................CACTGAGATGGGAGTGGTGTAAt.....................................................            read_326015_6_2_5_1_1_1       MATURE           16         2.09           13         2.61            3         1.12            t           22   
.........................CACTGAGATGGGAGTGGTG.........................................................             read_37572_2_4_0_3_2_1       MATURE           12         1.57            6         1.20            6         2.25                        19   
.........................CACTGAGATGGGAGTGGTGTAAa.....................................................            read_341498_3_4_1_2_2_0       MATURE           12         1.57            8         1.61            4         1.50            a           22   
.........................CACTGAGATGGGAGTGGT..........................................................             read_52720_2_0_1_4_4_0       MATURE           11         1.44            3         0.60            8         3.00                        18   
.........................CACTGAGATGGGAGTGGTGTtt......................................................             read_92251_6_3_0_0_0_1       MATURE           10         1.31            9         1.81            1         0.37           tt           20   
.........................CACTGAGATGGGAGTGGTGTt.......................................................             read_93633_0_4_0_1_2_1       MATURE            8         1.05            4         0.80            4         1.50            t           20   
.........................CACTGAGATGGGAGTGGTGTAtt.....................................................             read_82372_3_1_1_1_1_0       MATURE            7         0.92            5         1.00            2         0.75           tt           21   
..........................ACTGAGATGGGAGTGGTGTAt......................................................            read_131375_2_0_3_0_0_1       MATURE            6         0.78            5         1.00            1         0.37            t           20   
.........................CACTGAGATGGGAGTGGTGTta......................................................            read_117905_2_1_2_0_1_0       MATURE            6         0.78            5         1.00            1         0.37           ta           20   
........................GCACTGAGATGGGAGTGGTGTAt......................................................            read_109596_1_1_1_0_0_1       MATURE            4         0.52            3         0.60            1         0.37            t           22   
..........................ACTGAGATGGGAGTGGTGT........................................................             read_83944_1_1_0_1_1_0       MATURE            4         0.52            2         0.40            2         0.75                        19   
.........................CACTGAGATGGGAGTGGTGTAc......................................................            read_122668_1_0_1_0_1_0       MATURE            3         0.39            2         0.40            1         0.37            c           21   
.........................CACTGAGATGGGAGTGGTGTga......................................................            read_166621_0_1_0_0_1_1       MATURE            3         0.39            1         0.20            2         0.75           ga           20   
..........................ACTGAGATGGGAGTGGTGTAA......................................................             read_89966_1_1_0_0_1_0       MATURE            3         0.39            2         0.40            1         0.37                        21   
.........................CACTtAGATGGGAGTGGTGT........................................................            read_273525_1_0_1_0_0_1       MATURE            3         0.39            2         0.40            1         0.37                      4T15   
.........................CACTGAGATGGGAGTGtTGTAt......................................................             read_11891_1_0_0_0_0_2       MATURE            3         0.39            1         0.20            2         0.75            t         16T4   
.........................CACTGAGATGGGAGTGGTGTtat.....................................................            read_212975_0_0_0_0_1_1       MATURE            2         0.26            0         0.00            2         0.75          tat           20   
.........................CACTGAGATGGGAGTGGTGaa.......................................................            read_310416_1_0_0_0_1_0       MATURE            2         0.26            1         0.20            1         0.37           aa           19   
........................GCACTGAGATGGGAGTGGT..........................................................            read_237779_0_1_0_1_0_0       MATURE            2         0.26            1         0.20            1         0.37                        19   
.........................CACTGAGATGGGAGTGGTtTAA......................................................            read_237714_0_2_0_0_0_0       MATURE            2         0.26            2         0.40            0         0.00                      18T3   
.........................CACTGAGATGGGAGgGGTGTAA......................................................            read_289593_0_1_1_0_0_0       MATURE            2         0.26            2         0.40            0         0.00                      14G7   
.........................CACTGAGATGGGAGTGGTGTAta.....................................................            read_139783_0_1_1_0_0_0       MATURE            2         0.26            2         0.40            0         0.00           ta           21   
.........................CACTGAGATGGGAGTGGTGTc.......................................................            read_192356_1_0_0_0_0_1       MATURE            2         0.26            1         0.20            1         0.37            c           20   
............................TGAGATGGGAGTGGTGTAt......................................................            read_123095_1_0_0_0_0_1       MATURE            2         0.26            1         0.20            1         0.37            t           18   
.........................CACTGAGATGGGAGTGGTGa........................................................            read_225641_0_0_1_0_0_1       MATURE            2         0.26            1         0.20            1         0.37            a           19   
.........................CACTGAGATGGGAGTGGTtTAt......................................................             read_94635_0_1_0_0_0_1       MATURE            2         0.26            1         0.20            1         0.37            t         18T2   
.........................CACTGAGATGGGAGTGGTGTgt......................................................            read_148339_0_1_1_0_0_0       MATURE            2         0.26            2         0.40            0         0.00           gt           20   
.........................CACTGAGATGGGAGTGGTtt........................................................            read_374141_1_0_0_1_0_0       MATURE            2         0.26            1         0.20            1         0.37           tt           18   
..........................ACTGAGATGGGAGTGGTGTc.......................................................            read_390167_0_0_1_0_0_0       MATURE            1         0.13            1         0.20            0         0.00            c           19   
.........................CACTGAGATGGGAGTGGTGcat......................................................             read_62217_1_0_0_0_0_0       MATURE            1         0.13            1         0.20            0         0.00          cat           19   
...........................CTGAGATGGGAGTGGTGTA.......................................................             read_41464_0_0_0_0_1_0       MATURE            1         0.13            0         0.00            1         0.37                        19   
.........................CACTGAGATGGGAGTGGTaaa.......................................................            read_130388_0_0_0_0_1_0       MATURE            1         0.13            0         0.00            1         0.37          aaa           18   
........................GCACTGAGATGGGAGTGGTG.........................................................            read_257121_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.37                        20   
........................GCACTGAGATGGGAGTGGTGTAA......................................................            read_163568_0_0_0_0_1_0       MATURE            1         0.13            0         0.00            1         0.37                        23   
.........................CACTGAGATGGGAGTGGTGaAA......................................................             read_33052_0_0_0_0_1_0       MATURE            1         0.13            0         0.00            1         0.37                      19A2   
.........................CACTGAGAcGGGAGTGGTGTAA......................................................                read_69_0_1_0_0_0_0       MATURE            1         0.13            1         0.20            0         0.00                      8C13   
.........................CACTGAGATGGGAGTGGTat........................................................            read_363699_0_1_0_0_0_0       MATURE            1         0.13            1         0.20            0         0.00           at           18   
..........................ACTGAGATGGGAGTGGTGTAttt....................................................              read_2442_0_1_0_0_0_0       MATURE            1         0.13            1         0.20            0         0.00          ttt           20   
.............................GAGATGGGAGTGGTGTA.......................................................            read_159987_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.37                        17   
.........................CACTGAGATGGGAGTGGTta........................................................             read_46126_1_0_0_0_0_0       MATURE            1         0.13            1         0.20            0         0.00           ta           18   
.........................CACTGgGATGGGAGTGGTGTAt......................................................            read_386273_0_0_0_0_1_0       MATURE            1         0.13            0         0.00            1         0.37            t         5G15   
........................GCACTGAGATGGGAGTGGTGTgt......................................................             read_46310_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.37           gt           21   
.........................CACTGAGATGGGAGTGGTtat.......................................................             read_12139_0_1_0_0_0_0       MATURE            1         0.13            1         0.20            0         0.00          tat           18   
.........................CACTGAGATGGGAGTGGTGTAtat....................................................             read_39824_0_0_0_1_0_0       MATURE            1         0.13            0         0.00            1         0.37          tat           21   
.........................CACTGAGATGGGAGTGGTGTAAaa....................................................            read_195021_0_0_0_1_0_0       MATURE            1         0.13            0         0.00            1         0.37           aa           22   
.........................CACTGAGATGGGAGTGGTGTttt.....................................................            read_236658_0_1_0_0_0_0       MATURE            1         0.13            1         0.20            0         0.00          ttt           20   
.........................CACTGAGATGGGcGTGGTGT........................................................            read_224999_0_0_0_0_1_0       MATURE            1         0.13            0         0.00            1         0.37                      12C7   
.........................CAgTGAGATGGGAGTGGTGTAA......................................................            read_133024_0_0_0_1_0_0       MATURE            1         0.13            0         0.00            1         0.37                      2G19   
..........................ACTGAGATGGGAGTGGTGTAAa.....................................................            read_307980_0_0_0_0_1_0       MATURE            1         0.13            0         0.00            1         0.37            a           21   
.........................CACTGAGATGGGAGTGGTGgat......................................................             read_25289_1_0_0_0_0_0       MATURE            1         0.13            1         0.20            0         0.00          gat           19   
.........................CACTGAGATGGGAGTGGTGTAAtt....................................................            read_231283_0_1_0_0_0_0       MATURE            1         0.13            1         0.20            0         0.00           tt           22   
.........................CACTGAtATGGGAGTGGTGTAt......................................................            read_118091_0_1_0_0_0_0       MATURE            1         0.13            1         0.20            0         0.00            t         6T14   
.........................CACTGAGATGGGAGTGGTGTAttt....................................................            read_405362_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.37          ttt           21   
.........................CACTGAGATGGGAGTGG...........................................................            read_237044_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.37                        17   
.........................CACTGAGATGGGAGTGGTGTAAG.....................................................            read_290473_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.37                        23   
.........................CACTGAGATGGGAGTGGTGTAAat....................................................            read_376519_1_0_0_0_0_0       MATURE            1         0.13            1         0.20            0         0.00           at           22   
.........................CACTGAGATGGGAGTGGTGTAtgt....................................................            read_185668_0_0_0_0_1_0       MATURE            1         0.13            0         0.00            1         0.37          tgt           21   
........................GCACTGAGATGGGgGTGGTGT........................................................            read_245080_0_0_1_0_0_0       MATURE            1         0.13            1         0.20            0         0.00                      13G7   
.........................CACTGAGATGGGAGTGGTtTAAa.....................................................            read_227799_1_0_0_0_0_0       MATURE            1         0.13            1         0.20            0         0.00            a         18T3   
.........................CACTGAGATGGGAGTGGTtg........................................................            read_241045_0_1_0_0_0_0       MATURE            1         0.13            1         0.20            0         0.00           tg           18   
.........................CACTGAGATGGGAGTGGTGTAga.....................................................             read_50425_1_0_0_0_0_0       MATURE            1         0.13            1         0.20            0         0.00           ga           21   
.........................CACTGAGATGGGAGTGaTGTAt......................................................             read_64926_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.37            t         16A4   
..........................ACTGAGATGGGAGTGGTGTA.......................................................            read_110108_0_0_0_0_1_0       MATURE            1         0.13            0         0.00            1         0.37                        20   
.........................CACTGAGATGGtAGTGGTGTAt......................................................             read_47706_0_0_0_1_0_0       MATURE            1         0.13            0         0.00            1         0.37            t         11T9   
........................GCACTGAGATGGGAGTGGTGTttt.....................................................            read_149066_0_1_0_0_0_0       MATURE            1         0.13            1         0.20            0         0.00          ttt           21   
........................GCACTGAGATGGGAGTGGTGTA.......................................................            read_388748_0_0_0_0_0_1       MATURE            1         0.13            0         0.00            1         0.37                        22   
.........................CACTGAGATGGGAGTGGcGTAt......................................................             read_78331_0_0_0_1_0_0       MATURE            1         0.13            0         0.00            1         0.37            t         17C3   
.........................CACTGAGATGGGAGTGGTGTct......................................................            read_201446_0_1_0_0_0_0       MATURE            1         0.13            1         0.20            0         0.00           ct           20   
.........................CACTGAGATGGGAGTGGTGTAtc.....................................................            read_412165_1_0_0_0_0_0       MATURE            1         0.13            1         0.20            0         0.00           tc           21   
.........................CACTGAGATGGGAGTGGTGataa.....................................................             read_32040_0_0_1_0_0_0       MATURE            1         0.13            1         0.20            0         0.00         ataa           19   
.........................CACTGAGATGGGAGTGGTtttt......................................................             read_12937_0_1_0_0_0_0       MATURE            1         0.13            1         0.20            0         0.00         tttt           18   
                                                                                                                                                        ----------                ----------                ----------   
                                                                                                                                                               765                       498                       267                                          
                                                                                                                                                                                     (65.10)                   (34.90)                                       




*** MATURESTAR ***
____________________________________________________________________________________________________
GGCCTAGTCATCACCCTGAGCCTTGCACTGAGATGGGAGTGGTGTAAGGCTCAGGTATGCACAGCTCCCATCTCAGAACAAGGCTCGGGTGTGCTCAGCT REF                  2                    117010863 - 117010962 
                        GCACTGAGATGGGAGTGGTGTA                                                       MATURE               2                    117010888 - 117011008 mmu-miR-674          +                    
                                                           CACAGCTCCCATCTCAGAACAA                    MATURESTAR           2                    117010923 - 117011043 mmu-miR-674*         +                    
____________________________________________________________________________________________________

                                                                                                -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
............................................................ACAGCTCCCATCTCAGAAC......................   read_230563_5_8_6_2_2_4   MATURESTAR           27        29.35           19        31.15            8        25.81                        19   
............................................................ACAGCTCCCATCTCAGAACAA....................   read_125112_7_3_4_4_1_5   MATURESTAR           24        26.09           14        22.95           10        32.26                        21   
............................................................ACAGCTCCCATCTCAGAACA.....................   read_231095_9_7_0_2_2_2   MATURESTAR           22        23.91           16        26.23            6        19.35                        20   
............................................................ACAGCTCCCATCTCAGAACAAt...................   read_120250_1_3_2_0_2_0   MATURESTAR            8         8.70            6         9.84            2         6.45            t           21   
............................................................ACAGCTCCCATCTCAGAAt......................   read_288746_0_1_1_2_0_0   MATURESTAR            4         4.35            2         3.28            2         6.45            t           18   
............................................................ACAGCTCCCATCTCAGAACAt....................    read_40317_0_2_1_0_0_0   MATURESTAR            3         3.26            3         4.92            0         0.00            t           20   
............................................................ACAGCTCCCATCTCAGAACAAa...................   read_256632_0_0_1_0_0_1   MATURESTAR            2         2.17            1         1.64            1         3.23            a           21   
............................................................ACAGCTCCCATCTCAGA........................   read_220686_0_0_0_0_1_0   MATURESTAR            1         1.09            0         0.00            1         3.23                        17   
............................................................ACAGCTtCCATCTCAGAACA.....................   read_211129_0_0_0_0_1_0   MATURESTAR            1         1.09            0         0.00            1         3.23                      6T13   
                                                                                                                                               ----------                ----------                ----------   
                                                                                                                                                       92                        61                        31                                          
                                                                                                                                                                            (66.30)                   (33.70)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE             498             267             765          89.26%
     MATURESTAR              61              31              92          10.74%
                     ----------      ----------      ----------                
                            559             298             857                



[END]
