[BEGIN]
REFERENCE HAIRPIN
*************************************************************************************************************************
ID : mmu-mir-674
DESCRIPTION : mmu-mir-674 MI0004611 Mus musculus mir-674 stem-loop
CHROMOSOME : 2
SPAN : 117010863 - 117010962
LENGTH : 100
SEQUENCE : GGCCTAGTCATCACCCTGAGCCTTGCACTGAGATGGGAGTGGTGTAAGGCTCAGGTATGCACAGCTCCCATCTCAGAACAAGGCTCGGGTGTGCTCAGCT
OVERHANG THRESHOLD : 75%
*************************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-674
ACCID : MI0004611
PARENT : mmu-mir-674
CHROMOSOME : 2
START : 117010863
STOP : 117010962
OFFSET : 25..46
SEQUENCE : GCACTGAGATGGGAGTGGTGTA
STRAND : +
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-674*
ACCID : MI0004611
PARENT : mmu-mir-674
CHROMOSOME : 2
START : 117010863
STOP : 117010962
OFFSET : 60..81
SEQUENCE : CACAGCTCCCATCTCAGAACAA
STRAND : +
******************************
*** MATURE ***
____________________________________________________________________________________________________
GGCCTAGTCATCACCCTGAGCCTTGCACTGAGATGGGAGTGGTGTAAGGCTCAGGTATGCACAGCTCCCATCTCAGAACAAGGCTCGGGTGTGCTCAGCT REF 2 117010863 - 117010962
GCACTGAGATGGGAGTGGTGTA MATURE 2 117010888 - 117011008 mmu-miR-674 +
CACAGCTCCCATCTCAGAACAA MATURESTAR 2 117010923 - 117011043 mmu-miR-674* +
____________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.........................CACTGAGATGGGAGTGGTGTAt...................................................... read_40289_66_66_36_16_25_22 MATURE 231 30.20 168 33.73 63 23.60 t 21
.........................CACTGAGATGGGAGTGGTGT........................................................ read_340732_52_40_19_22_29_15 MATURE 177 23.14 111 22.29 66 24.72 20
.........................CACTGAGATGGGAGTGGTGTAA...................................................... read_295913_22_26_14_5_8_13 MATURE 88 11.50 62 12.45 26 9.74 22
.........................CACTGAGATGGGAGTGGTGTA....................................................... read_306353_9_9_7_9_9_7 MATURE 50 6.54 25 5.02 25 9.36 21
........................GCACTGAGATGGGAGTGGTGT........................................................ read_375417_4_5_5_3_4_3 MATURE 24 3.14 14 2.81 10 3.75 21
.........................CACTGAGATGGGAGTGGTGTAg...................................................... read_82801_4_5_2_1_2_3 MATURE 17 2.22 11 2.21 6 2.25 g 21
.........................CACTGAGATGGGAGTGGTGTAAt..................................................... read_326015_6_2_5_1_1_1 MATURE 16 2.09 13 2.61 3 1.12 t 22
.........................CACTGAGATGGGAGTGGTG......................................................... read_37572_2_4_0_3_2_1 MATURE 12 1.57 6 1.20 6 2.25 19
.........................CACTGAGATGGGAGTGGTGTAAa..................................................... read_341498_3_4_1_2_2_0 MATURE 12 1.57 8 1.61 4 1.50 a 22
.........................CACTGAGATGGGAGTGGT.......................................................... read_52720_2_0_1_4_4_0 MATURE 11 1.44 3 0.60 8 3.00 18
.........................CACTGAGATGGGAGTGGTGTtt...................................................... read_92251_6_3_0_0_0_1 MATURE 10 1.31 9 1.81 1 0.37 tt 20
.........................CACTGAGATGGGAGTGGTGTt....................................................... read_93633_0_4_0_1_2_1 MATURE 8 1.05 4 0.80 4 1.50 t 20
.........................CACTGAGATGGGAGTGGTGTAtt..................................................... read_82372_3_1_1_1_1_0 MATURE 7 0.92 5 1.00 2 0.75 tt 21
..........................ACTGAGATGGGAGTGGTGTAt...................................................... read_131375_2_0_3_0_0_1 MATURE 6 0.78 5 1.00 1 0.37 t 20
.........................CACTGAGATGGGAGTGGTGTta...................................................... read_117905_2_1_2_0_1_0 MATURE 6 0.78 5 1.00 1 0.37 ta 20
........................GCACTGAGATGGGAGTGGTGTAt...................................................... read_109596_1_1_1_0_0_1 MATURE 4 0.52 3 0.60 1 0.37 t 22
..........................ACTGAGATGGGAGTGGTGT........................................................ read_83944_1_1_0_1_1_0 MATURE 4 0.52 2 0.40 2 0.75 19
.........................CACTGAGATGGGAGTGGTGTAc...................................................... read_122668_1_0_1_0_1_0 MATURE 3 0.39 2 0.40 1 0.37 c 21
.........................CACTGAGATGGGAGTGGTGTga...................................................... read_166621_0_1_0_0_1_1 MATURE 3 0.39 1 0.20 2 0.75 ga 20
..........................ACTGAGATGGGAGTGGTGTAA...................................................... read_89966_1_1_0_0_1_0 MATURE 3 0.39 2 0.40 1 0.37 21
.........................CACTtAGATGGGAGTGGTGT........................................................ read_273525_1_0_1_0_0_1 MATURE 3 0.39 2 0.40 1 0.37 4T15
.........................CACTGAGATGGGAGTGtTGTAt...................................................... read_11891_1_0_0_0_0_2 MATURE 3 0.39 1 0.20 2 0.75 t 16T4
.........................CACTGAGATGGGAGTGGTGTtat..................................................... read_212975_0_0_0_0_1_1 MATURE 2 0.26 0 0.00 2 0.75 tat 20
.........................CACTGAGATGGGAGTGGTGaa....................................................... read_310416_1_0_0_0_1_0 MATURE 2 0.26 1 0.20 1 0.37 aa 19
........................GCACTGAGATGGGAGTGGT.......................................................... read_237779_0_1_0_1_0_0 MATURE 2 0.26 1 0.20 1 0.37 19
.........................CACTGAGATGGGAGTGGTtTAA...................................................... read_237714_0_2_0_0_0_0 MATURE 2 0.26 2 0.40 0 0.00 18T3
.........................CACTGAGATGGGAGgGGTGTAA...................................................... read_289593_0_1_1_0_0_0 MATURE 2 0.26 2 0.40 0 0.00 14G7
.........................CACTGAGATGGGAGTGGTGTAta..................................................... read_139783_0_1_1_0_0_0 MATURE 2 0.26 2 0.40 0 0.00 ta 21
.........................CACTGAGATGGGAGTGGTGTc....................................................... read_192356_1_0_0_0_0_1 MATURE 2 0.26 1 0.20 1 0.37 c 20
............................TGAGATGGGAGTGGTGTAt...................................................... read_123095_1_0_0_0_0_1 MATURE 2 0.26 1 0.20 1 0.37 t 18
.........................CACTGAGATGGGAGTGGTGa........................................................ read_225641_0_0_1_0_0_1 MATURE 2 0.26 1 0.20 1 0.37 a 19
.........................CACTGAGATGGGAGTGGTtTAt...................................................... read_94635_0_1_0_0_0_1 MATURE 2 0.26 1 0.20 1 0.37 t 18T2
.........................CACTGAGATGGGAGTGGTGTgt...................................................... read_148339_0_1_1_0_0_0 MATURE 2 0.26 2 0.40 0 0.00 gt 20
.........................CACTGAGATGGGAGTGGTtt........................................................ read_374141_1_0_0_1_0_0 MATURE 2 0.26 1 0.20 1 0.37 tt 18
..........................ACTGAGATGGGAGTGGTGTc....................................................... read_390167_0_0_1_0_0_0 MATURE 1 0.13 1 0.20 0 0.00 c 19
.........................CACTGAGATGGGAGTGGTGcat...................................................... read_62217_1_0_0_0_0_0 MATURE 1 0.13 1 0.20 0 0.00 cat 19
...........................CTGAGATGGGAGTGGTGTA....................................................... read_41464_0_0_0_0_1_0 MATURE 1 0.13 0 0.00 1 0.37 19
.........................CACTGAGATGGGAGTGGTaaa....................................................... read_130388_0_0_0_0_1_0 MATURE 1 0.13 0 0.00 1 0.37 aaa 18
........................GCACTGAGATGGGAGTGGTG......................................................... read_257121_0_0_0_0_0_1 MATURE 1 0.13 0 0.00 1 0.37 20
........................GCACTGAGATGGGAGTGGTGTAA...................................................... read_163568_0_0_0_0_1_0 MATURE 1 0.13 0 0.00 1 0.37 23
.........................CACTGAGATGGGAGTGGTGaAA...................................................... read_33052_0_0_0_0_1_0 MATURE 1 0.13 0 0.00 1 0.37 19A2
.........................CACTGAGAcGGGAGTGGTGTAA...................................................... read_69_0_1_0_0_0_0 MATURE 1 0.13 1 0.20 0 0.00 8C13
.........................CACTGAGATGGGAGTGGTat........................................................ read_363699_0_1_0_0_0_0 MATURE 1 0.13 1 0.20 0 0.00 at 18
..........................ACTGAGATGGGAGTGGTGTAttt.................................................... read_2442_0_1_0_0_0_0 MATURE 1 0.13 1 0.20 0 0.00 ttt 20
.............................GAGATGGGAGTGGTGTA....................................................... read_159987_0_0_0_0_0_1 MATURE 1 0.13 0 0.00 1 0.37 17
.........................CACTGAGATGGGAGTGGTta........................................................ read_46126_1_0_0_0_0_0 MATURE 1 0.13 1 0.20 0 0.00 ta 18
.........................CACTGgGATGGGAGTGGTGTAt...................................................... read_386273_0_0_0_0_1_0 MATURE 1 0.13 0 0.00 1 0.37 t 5G15
........................GCACTGAGATGGGAGTGGTGTgt...................................................... read_46310_0_0_0_0_0_1 MATURE 1 0.13 0 0.00 1 0.37 gt 21
.........................CACTGAGATGGGAGTGGTtat....................................................... read_12139_0_1_0_0_0_0 MATURE 1 0.13 1 0.20 0 0.00 tat 18
.........................CACTGAGATGGGAGTGGTGTAtat.................................................... read_39824_0_0_0_1_0_0 MATURE 1 0.13 0 0.00 1 0.37 tat 21
.........................CACTGAGATGGGAGTGGTGTAAaa.................................................... read_195021_0_0_0_1_0_0 MATURE 1 0.13 0 0.00 1 0.37 aa 22
.........................CACTGAGATGGGAGTGGTGTttt..................................................... read_236658_0_1_0_0_0_0 MATURE 1 0.13 1 0.20 0 0.00 ttt 20
.........................CACTGAGATGGGcGTGGTGT........................................................ read_224999_0_0_0_0_1_0 MATURE 1 0.13 0 0.00 1 0.37 12C7
.........................CAgTGAGATGGGAGTGGTGTAA...................................................... read_133024_0_0_0_1_0_0 MATURE 1 0.13 0 0.00 1 0.37 2G19
..........................ACTGAGATGGGAGTGGTGTAAa..................................................... read_307980_0_0_0_0_1_0 MATURE 1 0.13 0 0.00 1 0.37 a 21
.........................CACTGAGATGGGAGTGGTGgat...................................................... read_25289_1_0_0_0_0_0 MATURE 1 0.13 1 0.20 0 0.00 gat 19
.........................CACTGAGATGGGAGTGGTGTAAtt.................................................... read_231283_0_1_0_0_0_0 MATURE 1 0.13 1 0.20 0 0.00 tt 22
.........................CACTGAtATGGGAGTGGTGTAt...................................................... read_118091_0_1_0_0_0_0 MATURE 1 0.13 1 0.20 0 0.00 t 6T14
.........................CACTGAGATGGGAGTGGTGTAttt.................................................... read_405362_0_0_0_0_0_1 MATURE 1 0.13 0 0.00 1 0.37 ttt 21
.........................CACTGAGATGGGAGTGG........................................................... read_237044_0_0_0_0_0_1 MATURE 1 0.13 0 0.00 1 0.37 17
.........................CACTGAGATGGGAGTGGTGTAAG..................................................... read_290473_0_0_0_0_0_1 MATURE 1 0.13 0 0.00 1 0.37 23
.........................CACTGAGATGGGAGTGGTGTAAat.................................................... read_376519_1_0_0_0_0_0 MATURE 1 0.13 1 0.20 0 0.00 at 22
.........................CACTGAGATGGGAGTGGTGTAtgt.................................................... read_185668_0_0_0_0_1_0 MATURE 1 0.13 0 0.00 1 0.37 tgt 21
........................GCACTGAGATGGGgGTGGTGT........................................................ read_245080_0_0_1_0_0_0 MATURE 1 0.13 1 0.20 0 0.00 13G7
.........................CACTGAGATGGGAGTGGTtTAAa..................................................... read_227799_1_0_0_0_0_0 MATURE 1 0.13 1 0.20 0 0.00 a 18T3
.........................CACTGAGATGGGAGTGGTtg........................................................ read_241045_0_1_0_0_0_0 MATURE 1 0.13 1 0.20 0 0.00 tg 18
.........................CACTGAGATGGGAGTGGTGTAga..................................................... read_50425_1_0_0_0_0_0 MATURE 1 0.13 1 0.20 0 0.00 ga 21
.........................CACTGAGATGGGAGTGaTGTAt...................................................... read_64926_0_0_0_0_0_1 MATURE 1 0.13 0 0.00 1 0.37 t 16A4
..........................ACTGAGATGGGAGTGGTGTA....................................................... read_110108_0_0_0_0_1_0 MATURE 1 0.13 0 0.00 1 0.37 20
.........................CACTGAGATGGtAGTGGTGTAt...................................................... read_47706_0_0_0_1_0_0 MATURE 1 0.13 0 0.00 1 0.37 t 11T9
........................GCACTGAGATGGGAGTGGTGTttt..................................................... read_149066_0_1_0_0_0_0 MATURE 1 0.13 1 0.20 0 0.00 ttt 21
........................GCACTGAGATGGGAGTGGTGTA....................................................... read_388748_0_0_0_0_0_1 MATURE 1 0.13 0 0.00 1 0.37 22
.........................CACTGAGATGGGAGTGGcGTAt...................................................... read_78331_0_0_0_1_0_0 MATURE 1 0.13 0 0.00 1 0.37 t 17C3
.........................CACTGAGATGGGAGTGGTGTct...................................................... read_201446_0_1_0_0_0_0 MATURE 1 0.13 1 0.20 0 0.00 ct 20
.........................CACTGAGATGGGAGTGGTGTAtc..................................................... read_412165_1_0_0_0_0_0 MATURE 1 0.13 1 0.20 0 0.00 tc 21
.........................CACTGAGATGGGAGTGGTGataa..................................................... read_32040_0_0_1_0_0_0 MATURE 1 0.13 1 0.20 0 0.00 ataa 19
.........................CACTGAGATGGGAGTGGTtttt...................................................... read_12937_0_1_0_0_0_0 MATURE 1 0.13 1 0.20 0 0.00 tttt 18
---------- ---------- ----------
765 498 267
(65.10) (34.90)
*** MATURESTAR ***
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GGCCTAGTCATCACCCTGAGCCTTGCACTGAGATGGGAGTGGTGTAAGGCTCAGGTATGCACAGCTCCCATCTCAGAACAAGGCTCGGGTGTGCTCAGCT REF 2 117010863 - 117010962
GCACTGAGATGGGAGTGGTGTA MATURE 2 117010888 - 117011008 mmu-miR-674 +
CACAGCTCCCATCTCAGAACAA MATURESTAR 2 117010923 - 117011043 mmu-miR-674* +
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-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
............................................................ACAGCTCCCATCTCAGAAC...................... read_230563_5_8_6_2_2_4 MATURESTAR 27 29.35 19 31.15 8 25.81 19
............................................................ACAGCTCCCATCTCAGAACAA.................... read_125112_7_3_4_4_1_5 MATURESTAR 24 26.09 14 22.95 10 32.26 21
............................................................ACAGCTCCCATCTCAGAACA..................... read_231095_9_7_0_2_2_2 MATURESTAR 22 23.91 16 26.23 6 19.35 20
............................................................ACAGCTCCCATCTCAGAACAAt................... read_120250_1_3_2_0_2_0 MATURESTAR 8 8.70 6 9.84 2 6.45 t 21
............................................................ACAGCTCCCATCTCAGAAt...................... read_288746_0_1_1_2_0_0 MATURESTAR 4 4.35 2 3.28 2 6.45 t 18
............................................................ACAGCTCCCATCTCAGAACAt.................... read_40317_0_2_1_0_0_0 MATURESTAR 3 3.26 3 4.92 0 0.00 t 20
............................................................ACAGCTCCCATCTCAGAACAAa................... read_256632_0_0_1_0_0_1 MATURESTAR 2 2.17 1 1.64 1 3.23 a 21
............................................................ACAGCTCCCATCTCAGA........................ read_220686_0_0_0_0_1_0 MATURESTAR 1 1.09 0 0.00 1 3.23 17
............................................................ACAGCTtCCATCTCAGAACA..................... read_211129_0_0_0_0_1_0 MATURESTAR 1 1.09 0 0.00 1 3.23 6T13
---------- ---------- ----------
92 61 31
(66.30) (33.70)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
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MATURE 498 267 765 89.26%
MATURESTAR 61 31 92 10.74%
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559 298 857
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