[BEGIN]

REFERENCE HAIRPIN
***********************************************************************************************************************
ID                 : mmu-mir-671
DESCRIPTION        : mmu-mir-671 MI0004133 Mus musculus mir-671 stem-loop
CHROMOSOME         : 5
SPAN               : 24097932 - 24098029
LENGTH             : 98
SEQUENCE           : TGGCAGGCCAGGAAGAGGAGGAAGCCCTGGAGGGGCTGGAGGTGATGGATGTTTTCCTCCGGTTCTCAGGGCTCCACCTCTTTCGAGCCGTAGAGCCA
OVERHANG THRESHOLD : 75%
***********************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE-3P
ID         : mmu-miR-671-3p
ACCID      : MI0004133
PARENT     : mmu-mir-671
CHROMOSOME : 5
START      : 24097932
STOP       : 24098029
OFFSET     : 58..78
SEQUENCE   : TCCGGTTCTCAGGGCTCCACC
STRAND     : +
******************************


TARGET
******************************
CATEGORY   : MATURE-5P
ID         : mmu-miR-671-5p
ACCID      : MI0004133
PARENT     : mmu-mir-671
CHROMOSOME : 5
START      : 24097932
STOP       : 24098029
OFFSET     : 19..41
SEQUENCE   : AGGAAGCCCTGGAGGGGCTGGAG
STRAND     : +
******************************



*** MATURE-3P ***
__________________________________________________________________________________________________
TGGCAGGCCAGGAAGAGGAGGAAGCCCTGGAGGGGCTGGAGGTGATGGATGTTTTCCTCCGGTTCTCAGGGCTCCACCTCTTTCGAGCCGTAGAGCCA REF                  5                    24097932 - 24098029  
                                                         TCCGGTTCTCAGGGCTCCACC                     MATURE-3P            5                    24097990 - 24098107  mmu-miR-671-3p       +                    
                  AGGAAGCCCTGGAGGGGCTGGAG                                                          MATURE-5P            5                    24097951 - 24098070  mmu-miR-671-5p       +                    
__________________________________________________________________________________________________

                                                                                              -SEQ-                       -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
..........................................................CCGGTTCTCAGGGCTCCACt.....................       read_44532_6_1_0_2_1_1    MATURE-3P           11        22.92            7        22.58            4        23.53            t           19   
..........................................................CCGGTTCTCAGGGCTCCACa.....................      read_375233_0_2_0_1_1_0    MATURE-3P            4         8.33            2         6.45            2        11.76            a           19   
..........................................................CCGGTTCTCAGGGCTCCACCT....................       read_62046_0_2_0_0_1_1    MATURE-3P            4         8.33            2         6.45            2        11.76                        21   
..........................................................CCGGTTCTCAGGGCTCCAC......................      read_278428_0_1_1_0_2_0    MATURE-3P            4         8.33            2         6.45            2        11.76                        19   
..........................................................CCGGTTCTCAGGGCTCCACttt...................      read_273652_0_1_0_1_0_1    MATURE-3P            3         6.25            1         3.23            2        11.76          ttt           19   
..........................................................CCGGTTCTCAGGGCTCCACCTtt..................      read_251758_2_0_0_0_0_0    MATURE-3P            2         4.17            2         6.45            0         0.00           tt           21   
..........................................................CCGGTTCTCAGGGCTCCACCTaa..................       read_90544_1_1_0_0_0_0    MATURE-3P            2         4.17            2         6.45            0         0.00           aa           21   
..........................................................CCGGTTCTCAGGGCTCCAt......................      read_272842_0_1_1_0_0_0    MATURE-3P            2         4.17            2         6.45            0         0.00            t           18   
..........................................................CCGGTTCTCAGGGCTCCAttt....................      read_383627_0_2_0_0_0_0    MATURE-3P            2         4.17            2         6.45            0         0.00          ttt           18   
..........................................................CCGGTTCTCAGGGCTCCAtt.....................       read_23254_1_1_0_0_0_0    MATURE-3P            2         4.17            2         6.45            0         0.00           tt           18   
..........................................................CCGGTTCTCAGGGCTCCACCTt...................      read_166388_0_0_0_2_0_0    MATURE-3P            2         4.17            0         0.00            2        11.76            t           21   
..........................................................CCGGTTCTCAGGGCTCCAaa.....................      read_329861_1_0_0_0_0_0    MATURE-3P            1         2.08            1         3.23            0         0.00           aa           18   
.........................................................TCCGGTTCTCAGGGCTCCACa.....................      read_296606_0_0_1_0_0_0    MATURE-3P            1         2.08            1         3.23            0         0.00            a           20   
..........................................................CCGGTTCTCAGGGCTCCACaaa...................      read_123996_0_0_0_0_1_0    MATURE-3P            1         2.08            0         0.00            1         5.88          aaa           19   
..........................................................CCGGTTCTCAGGGCTCCA.......................        read_4394_1_0_0_0_0_0    MATURE-3P            1         2.08            1         3.23            0         0.00                        18   
..........................................................CCGGTTCTCAGGGCTCCACCattt.................      read_250711_1_0_0_0_0_0    MATURE-3P            1         2.08            1         3.23            0         0.00         attt           20   
..........................................................CCGGTTCTCAGGGCTCCACCTtTT.................        read_1907_1_0_0_0_0_0    MATURE-3P            1         2.08            1         3.23            0         0.00                      21T2   
..........................................................CCGGTTCTCAGGGCTCCACC.....................      read_132384_0_0_0_1_0_0    MATURE-3P            1         2.08            0         0.00            1         5.88                        20   
..........................................................CCGGTTCTCAGGGCTCCACCTtgta................       read_47419_1_0_0_0_0_0    MATURE-3P            1         2.08            1         3.23            0         0.00         tgta           21   
..........................................................CCGGTTCTCAGGGCTCCAaga....................      read_301933_1_0_0_0_0_0    MATURE-3P            1         2.08            1         3.23            0         0.00          aga           18   
..........................................................CCGGTTCTCAGGGCTCCACta....................      read_134218_0_0_0_0_1_0    MATURE-3P            1         2.08            0         0.00            1         5.88           ta           19   
                                                                                                                                                ----------                ----------                ----------   
                                                                                                                                                        48                        31                        17                                          
                                                                                                                                                                             (64.58)                   (35.42)                                       




*** MATURE-5P ***
__________________________________________________________________________________________________
TGGCAGGCCAGGAAGAGGAGGAAGCCCTGGAGGGGCTGGAGGTGATGGATGTTTTCCTCCGGTTCTCAGGGCTCCACCTCTTTCGAGCCGTAGAGCCA REF                  5                    24097932 - 24098029  
                                                         TCCGGTTCTCAGGGCTCCACC                     MATURE-3P            5                    24097990 - 24098107  mmu-miR-671-3p       +                    
                  AGGAAGCCCTGGAGGGGCTGGAG                                                          MATURE-5P            5                    24097951 - 24098070  mmu-miR-671-5p       +                    
__________________________________________________________________________________________________

                                                                                              -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...................GGAAGCCCTGGAGGGGCTGGAG..........................................................   read_271921_7_8_6_4_0_1    MATURE-5P           26        24.53           21        23.86            5        27.78                        22   
...................GGAAGCCCTGGAGGGGCTGGAGG.........................................................   read_386697_6_8_6_0_0_0    MATURE-5P           20        18.87           20        22.73            0         0.00                        23   
...................GGAAGCCCTGGAGGGGCT..............................................................   read_144602_1_0_1_2_2_3    MATURE-5P            9         8.49            2         2.27            7        38.89                        18   
...................GGAAGCCCTGGAGGGGCTGGAGt.........................................................   read_202895_2_5_1_0_0_0    MATURE-5P            8         7.55            8         9.09            0         0.00            t           22   
...................GGAAGCCCTGGAGGGGCTGGAat.........................................................   read_251303_3_2_3_0_0_0    MATURE-5P            8         7.55            8         9.09            0         0.00           at           21   
...................GGAAGCCCTGGAGGGGCTGGgGG.........................................................   read_392265_1_3_0_0_0_0    MATURE-5P            4         3.77            4         4.55            0         0.00                      20G2   
...................GGAAGCCCTGGAGGGGCTGGAGa.........................................................   read_304993_1_2_0_0_0_0    MATURE-5P            3         2.83            3         3.41            0         0.00            a           22   
...................GGAAGCCCTGGAGGGGCTGGAt..........................................................   read_369146_1_0_1_0_0_0    MATURE-5P            2         1.89            2         2.27            0         0.00            t           21   
...................GGAAGCCCTGGAGGGGCTGGAa..........................................................   read_183300_1_0_1_0_0_0    MATURE-5P            2         1.89            2         2.27            0         0.00            a           21   
...................GGAAGCCCTGGAGGGGCTGG............................................................    read_45859_0_0_0_1_1_0    MATURE-5P            2         1.89            0         0.00            2        11.11                        20   
...................GGAAGCCCTGGAGGGGCTGGcGG.........................................................    read_89267_0_1_0_0_0_0    MATURE-5P            1         0.94            1         1.14            0         0.00                      20C2   
...................GGAAGCCCTGGAGGGGCgGGAG..........................................................     read_7038_0_0_1_0_0_0    MATURE-5P            1         0.94            1         1.14            0         0.00                      17G4   
...................GGAAGCCCTGGAGGGGCTGGc...........................................................     read_6423_0_1_0_0_0_0    MATURE-5P            1         0.94            1         1.14            0         0.00            c           20   
...................GGAAGCCCTGGAGGGGCTtGAG..........................................................   read_292419_0_0_0_1_0_0    MATURE-5P            1         0.94            0         0.00            1         5.56                      18T3   
...................GGAAGCCCTGGAGGGGCTGGt...........................................................   read_189099_0_0_0_0_0_1    MATURE-5P            1         0.94            0         0.00            1         5.56            t           20   
...................GGAAGCCCTGGAGGGGCTG.............................................................   read_367893_0_0_0_0_0_1    MATURE-5P            1         0.94            0         0.00            1         5.56                        19   
...................GGAAGCCCTGGAGGGGCTGGgg..........................................................    read_24460_0_0_1_0_0_0    MATURE-5P            1         0.94            1         1.14            0         0.00           gg           20   
...................GGAAGCCCTGGAGGGGCTGagt..........................................................   read_105537_1_0_0_0_0_0    MATURE-5P            1         0.94            1         1.14            0         0.00          agt           19   
...................GGAAGCCaTGGAGGGGCTGGAa..........................................................    read_52767_1_0_0_0_0_0    MATURE-5P            1         0.94            1         1.14            0         0.00            a         7A13   
...................GGAAGCCCTGGAGGGGCTGGtGG.........................................................   read_341528_0_0_1_0_0_0    MATURE-5P            1         0.94            1         1.14            0         0.00                      20T2   
...................GGAAGCCCTGGAGGGGCTGGAag.........................................................    read_32247_1_0_0_0_0_0    MATURE-5P            1         0.94            1         1.14            0         0.00           ag           21   
...................GGAAGCCCTGGAGGGGCTGGA...........................................................    read_94185_1_0_0_0_0_0    MATURE-5P            1         0.94            1         1.14            0         0.00                        21   
...................GGAAGCCCTGGAcGGGCTGGAt..........................................................    read_60694_0_1_0_0_0_0    MATURE-5P            1         0.94            1         1.14            0         0.00            t         12C8   
...................GGAAGCCCTGGAGtGGCTGGAG..........................................................   read_194862_0_1_0_0_0_0    MATURE-5P            1         0.94            1         1.14            0         0.00                      13T8   
...................GGAAGCCCTGGAGGGGCTGGtgt.........................................................   read_222559_1_0_0_0_0_0    MATURE-5P            1         0.94            1         1.14            0         0.00          tgt           20   
...................GGAAGCCCTGGAGGGGCTGGggt.........................................................   read_152484_0_0_1_0_0_0    MATURE-5P            1         0.94            1         1.14            0         0.00          ggt           20   
...................GGAAGCCCTGGAGGaGCTGGAG..........................................................   read_169220_1_0_0_0_0_0    MATURE-5P            1         0.94            1         1.14            0         0.00                      14A7   
...................GGAAGCCCTGGAGGGGCTGGtg..........................................................    read_33476_0_1_0_0_0_0    MATURE-5P            1         0.94            1         1.14            0         0.00           tg           20   
...................GGAAGCCCTGGAGGGGCTGGga..........................................................   read_108556_0_0_1_0_0_0    MATURE-5P            1         0.94            1         1.14            0         0.00           ga           20   
...................GGAAGCCCTGGAGGGGC...............................................................   read_337517_0_0_0_0_1_0    MATURE-5P            1         0.94            0         0.00            1         5.56                        17   
...................GGAAGCCCTGGAGGGcCTGGAGt.........................................................    read_70006_0_1_0_0_0_0    MATURE-5P            1         0.94            1         1.14            0         0.00            t         15C6   
...................GGAAGCCCTGGAGGaGCTGGAGG.........................................................   read_122262_1_0_0_0_0_0    MATURE-5P            1         0.94            1         1.14            0         0.00                      14A8   
                                                                                                                                             ----------                ----------                ----------   
                                                                                                                                                    106                        88                        18                                          
                                                                                                                                                                          (83.02)                   (16.98)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
      MATURE-3P              31              17              48          31.17%
      MATURE-5P              88              18             106          68.83%
                     ----------      ----------      ----------                
                            119              35             154                



[END]
