[BEGIN]
REFERENCE HAIRPIN
***********************************************************************************************************************
ID : mmu-mir-671
DESCRIPTION : mmu-mir-671 MI0004133 Mus musculus mir-671 stem-loop
CHROMOSOME : 5
SPAN : 24097932 - 24098029
LENGTH : 98
SEQUENCE : TGGCAGGCCAGGAAGAGGAGGAAGCCCTGGAGGGGCTGGAGGTGATGGATGTTTTCCTCCGGTTCTCAGGGCTCCACCTCTTTCGAGCCGTAGAGCCA
OVERHANG THRESHOLD : 75%
***********************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE-3P
ID : mmu-miR-671-3p
ACCID : MI0004133
PARENT : mmu-mir-671
CHROMOSOME : 5
START : 24097932
STOP : 24098029
OFFSET : 58..78
SEQUENCE : TCCGGTTCTCAGGGCTCCACC
STRAND : +
******************************
TARGET
******************************
CATEGORY : MATURE-5P
ID : mmu-miR-671-5p
ACCID : MI0004133
PARENT : mmu-mir-671
CHROMOSOME : 5
START : 24097932
STOP : 24098029
OFFSET : 19..41
SEQUENCE : AGGAAGCCCTGGAGGGGCTGGAG
STRAND : +
******************************
*** MATURE-3P ***
__________________________________________________________________________________________________
TGGCAGGCCAGGAAGAGGAGGAAGCCCTGGAGGGGCTGGAGGTGATGGATGTTTTCCTCCGGTTCTCAGGGCTCCACCTCTTTCGAGCCGTAGAGCCA REF 5 24097932 - 24098029
TCCGGTTCTCAGGGCTCCACC MATURE-3P 5 24097990 - 24098107 mmu-miR-671-3p +
AGGAAGCCCTGGAGGGGCTGGAG MATURE-5P 5 24097951 - 24098070 mmu-miR-671-5p +
__________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..........................................................CCGGTTCTCAGGGCTCCACt..................... read_44532_6_1_0_2_1_1 MATURE-3P 11 22.92 7 22.58 4 23.53 t 19
..........................................................CCGGTTCTCAGGGCTCCACa..................... read_375233_0_2_0_1_1_0 MATURE-3P 4 8.33 2 6.45 2 11.76 a 19
..........................................................CCGGTTCTCAGGGCTCCACCT.................... read_62046_0_2_0_0_1_1 MATURE-3P 4 8.33 2 6.45 2 11.76 21
..........................................................CCGGTTCTCAGGGCTCCAC...................... read_278428_0_1_1_0_2_0 MATURE-3P 4 8.33 2 6.45 2 11.76 19
..........................................................CCGGTTCTCAGGGCTCCACttt................... read_273652_0_1_0_1_0_1 MATURE-3P 3 6.25 1 3.23 2 11.76 ttt 19
..........................................................CCGGTTCTCAGGGCTCCACCTtt.................. read_251758_2_0_0_0_0_0 MATURE-3P 2 4.17 2 6.45 0 0.00 tt 21
..........................................................CCGGTTCTCAGGGCTCCACCTaa.................. read_90544_1_1_0_0_0_0 MATURE-3P 2 4.17 2 6.45 0 0.00 aa 21
..........................................................CCGGTTCTCAGGGCTCCAt...................... read_272842_0_1_1_0_0_0 MATURE-3P 2 4.17 2 6.45 0 0.00 t 18
..........................................................CCGGTTCTCAGGGCTCCAttt.................... read_383627_0_2_0_0_0_0 MATURE-3P 2 4.17 2 6.45 0 0.00 ttt 18
..........................................................CCGGTTCTCAGGGCTCCAtt..................... read_23254_1_1_0_0_0_0 MATURE-3P 2 4.17 2 6.45 0 0.00 tt 18
..........................................................CCGGTTCTCAGGGCTCCACCTt................... read_166388_0_0_0_2_0_0 MATURE-3P 2 4.17 0 0.00 2 11.76 t 21
..........................................................CCGGTTCTCAGGGCTCCAaa..................... read_329861_1_0_0_0_0_0 MATURE-3P 1 2.08 1 3.23 0 0.00 aa 18
.........................................................TCCGGTTCTCAGGGCTCCACa..................... read_296606_0_0_1_0_0_0 MATURE-3P 1 2.08 1 3.23 0 0.00 a 20
..........................................................CCGGTTCTCAGGGCTCCACaaa................... read_123996_0_0_0_0_1_0 MATURE-3P 1 2.08 0 0.00 1 5.88 aaa 19
..........................................................CCGGTTCTCAGGGCTCCA....................... read_4394_1_0_0_0_0_0 MATURE-3P 1 2.08 1 3.23 0 0.00 18
..........................................................CCGGTTCTCAGGGCTCCACCattt................. read_250711_1_0_0_0_0_0 MATURE-3P 1 2.08 1 3.23 0 0.00 attt 20
..........................................................CCGGTTCTCAGGGCTCCACCTtTT................. read_1907_1_0_0_0_0_0 MATURE-3P 1 2.08 1 3.23 0 0.00 21T2
..........................................................CCGGTTCTCAGGGCTCCACC..................... read_132384_0_0_0_1_0_0 MATURE-3P 1 2.08 0 0.00 1 5.88 20
..........................................................CCGGTTCTCAGGGCTCCACCTtgta................ read_47419_1_0_0_0_0_0 MATURE-3P 1 2.08 1 3.23 0 0.00 tgta 21
..........................................................CCGGTTCTCAGGGCTCCAaga.................... read_301933_1_0_0_0_0_0 MATURE-3P 1 2.08 1 3.23 0 0.00 aga 18
..........................................................CCGGTTCTCAGGGCTCCACta.................... read_134218_0_0_0_0_1_0 MATURE-3P 1 2.08 0 0.00 1 5.88 ta 19
---------- ---------- ----------
48 31 17
(64.58) (35.42)
*** MATURE-5P ***
__________________________________________________________________________________________________
TGGCAGGCCAGGAAGAGGAGGAAGCCCTGGAGGGGCTGGAGGTGATGGATGTTTTCCTCCGGTTCTCAGGGCTCCACCTCTTTCGAGCCGTAGAGCCA REF 5 24097932 - 24098029
TCCGGTTCTCAGGGCTCCACC MATURE-3P 5 24097990 - 24098107 mmu-miR-671-3p +
AGGAAGCCCTGGAGGGGCTGGAG MATURE-5P 5 24097951 - 24098070 mmu-miR-671-5p +
__________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...................GGAAGCCCTGGAGGGGCTGGAG.......................................................... read_271921_7_8_6_4_0_1 MATURE-5P 26 24.53 21 23.86 5 27.78 22
...................GGAAGCCCTGGAGGGGCTGGAGG......................................................... read_386697_6_8_6_0_0_0 MATURE-5P 20 18.87 20 22.73 0 0.00 23
...................GGAAGCCCTGGAGGGGCT.............................................................. read_144602_1_0_1_2_2_3 MATURE-5P 9 8.49 2 2.27 7 38.89 18
...................GGAAGCCCTGGAGGGGCTGGAGt......................................................... read_202895_2_5_1_0_0_0 MATURE-5P 8 7.55 8 9.09 0 0.00 t 22
...................GGAAGCCCTGGAGGGGCTGGAat......................................................... read_251303_3_2_3_0_0_0 MATURE-5P 8 7.55 8 9.09 0 0.00 at 21
...................GGAAGCCCTGGAGGGGCTGGgGG......................................................... read_392265_1_3_0_0_0_0 MATURE-5P 4 3.77 4 4.55 0 0.00 20G2
...................GGAAGCCCTGGAGGGGCTGGAGa......................................................... read_304993_1_2_0_0_0_0 MATURE-5P 3 2.83 3 3.41 0 0.00 a 22
...................GGAAGCCCTGGAGGGGCTGGAt.......................................................... read_369146_1_0_1_0_0_0 MATURE-5P 2 1.89 2 2.27 0 0.00 t 21
...................GGAAGCCCTGGAGGGGCTGGAa.......................................................... read_183300_1_0_1_0_0_0 MATURE-5P 2 1.89 2 2.27 0 0.00 a 21
...................GGAAGCCCTGGAGGGGCTGG............................................................ read_45859_0_0_0_1_1_0 MATURE-5P 2 1.89 0 0.00 2 11.11 20
...................GGAAGCCCTGGAGGGGCTGGcGG......................................................... read_89267_0_1_0_0_0_0 MATURE-5P 1 0.94 1 1.14 0 0.00 20C2
...................GGAAGCCCTGGAGGGGCgGGAG.......................................................... read_7038_0_0_1_0_0_0 MATURE-5P 1 0.94 1 1.14 0 0.00 17G4
...................GGAAGCCCTGGAGGGGCTGGc........................................................... read_6423_0_1_0_0_0_0 MATURE-5P 1 0.94 1 1.14 0 0.00 c 20
...................GGAAGCCCTGGAGGGGCTtGAG.......................................................... read_292419_0_0_0_1_0_0 MATURE-5P 1 0.94 0 0.00 1 5.56 18T3
...................GGAAGCCCTGGAGGGGCTGGt........................................................... read_189099_0_0_0_0_0_1 MATURE-5P 1 0.94 0 0.00 1 5.56 t 20
...................GGAAGCCCTGGAGGGGCTG............................................................. read_367893_0_0_0_0_0_1 MATURE-5P 1 0.94 0 0.00 1 5.56 19
...................GGAAGCCCTGGAGGGGCTGGgg.......................................................... read_24460_0_0_1_0_0_0 MATURE-5P 1 0.94 1 1.14 0 0.00 gg 20
...................GGAAGCCCTGGAGGGGCTGagt.......................................................... read_105537_1_0_0_0_0_0 MATURE-5P 1 0.94 1 1.14 0 0.00 agt 19
...................GGAAGCCaTGGAGGGGCTGGAa.......................................................... read_52767_1_0_0_0_0_0 MATURE-5P 1 0.94 1 1.14 0 0.00 a 7A13
...................GGAAGCCCTGGAGGGGCTGGtGG......................................................... read_341528_0_0_1_0_0_0 MATURE-5P 1 0.94 1 1.14 0 0.00 20T2
...................GGAAGCCCTGGAGGGGCTGGAag......................................................... read_32247_1_0_0_0_0_0 MATURE-5P 1 0.94 1 1.14 0 0.00 ag 21
...................GGAAGCCCTGGAGGGGCTGGA........................................................... read_94185_1_0_0_0_0_0 MATURE-5P 1 0.94 1 1.14 0 0.00 21
...................GGAAGCCCTGGAcGGGCTGGAt.......................................................... read_60694_0_1_0_0_0_0 MATURE-5P 1 0.94 1 1.14 0 0.00 t 12C8
...................GGAAGCCCTGGAGtGGCTGGAG.......................................................... read_194862_0_1_0_0_0_0 MATURE-5P 1 0.94 1 1.14 0 0.00 13T8
...................GGAAGCCCTGGAGGGGCTGGtgt......................................................... read_222559_1_0_0_0_0_0 MATURE-5P 1 0.94 1 1.14 0 0.00 tgt 20
...................GGAAGCCCTGGAGGGGCTGGggt......................................................... read_152484_0_0_1_0_0_0 MATURE-5P 1 0.94 1 1.14 0 0.00 ggt 20
...................GGAAGCCCTGGAGGaGCTGGAG.......................................................... read_169220_1_0_0_0_0_0 MATURE-5P 1 0.94 1 1.14 0 0.00 14A7
...................GGAAGCCCTGGAGGGGCTGGtg.......................................................... read_33476_0_1_0_0_0_0 MATURE-5P 1 0.94 1 1.14 0 0.00 tg 20
...................GGAAGCCCTGGAGGGGCTGGga.......................................................... read_108556_0_0_1_0_0_0 MATURE-5P 1 0.94 1 1.14 0 0.00 ga 20
...................GGAAGCCCTGGAGGGGC............................................................... read_337517_0_0_0_0_1_0 MATURE-5P 1 0.94 0 0.00 1 5.56 17
...................GGAAGCCCTGGAGGGcCTGGAGt......................................................... read_70006_0_1_0_0_0_0 MATURE-5P 1 0.94 1 1.14 0 0.00 t 15C6
...................GGAAGCCCTGGAGGaGCTGGAGG......................................................... read_122262_1_0_0_0_0_0 MATURE-5P 1 0.94 1 1.14 0 0.00 14A8
---------- ---------- ----------
106 88 18
(83.02) (16.98)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
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MATURE-3P 31 17 48 31.17%
MATURE-5P 88 18 106 68.83%
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119 35 154
[END]