[BEGIN]

REFERENCE HAIRPIN
**********************************************************************************************************************
ID                 : mmu-mir-669a-1
DESCRIPTION        : mmu-mir-669a-1 MI0004523 Mus musculus mir-669a-1 stem-loop
CHROMOSOME         : 2
SPAN               : 10433830 - 10433926
LENGTH             : 97
SEQUENCE           : TGTATGTGCATGTGTGTATAGTTGTGTGTGCATGTTCATGTCTATATTTGAATATACATAACATACACACACACGTATAAACGCAAGCACACATACA
OVERHANG THRESHOLD : 75%
**********************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-669a
ACCID      : MI0004523
PARENT     : mmu-mir-669a-1
CHROMOSOME : 2
START      : 10433830
STOP       : 10433926
OFFSET     : 20..41
SEQUENCE   : AGTTGTGTGTGCATGTTCATGT
STRAND     : +
******************************



*** MATURE ***
_________________________________________________________________________________________________
TGTATGTGCATGTGTGTATAGTTGTGTGTGCATGTTCATGTCTATATTTGAATATACATAACATACACACACACGTATAAACGCAAGCACACATACA REF                  2                    10433830 - 10433926  
                   AGTTGTGTGTGCATGTTCATGT                                                         MATURE               2                    10433850 - 10433967  mmu-miR-669a         +                    
_________________________________________________________________________________________________

                                                                                             -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...................AGTTGTGTGTGCATGTTCATGT.........................................................   read_197262_0_1_0_0_0_0       MATURE            1       100.00            1       100.00            0            0                        22   
                                                                                                                                            ----------                ----------                ----------   
                                                                                                                                                     1                         1                         0                                          
                                                                                                                                                                        (100.00)                    (0.00)                                       




*** OTHER ***
_________________________________________________________________________________________________
TGTATGTGCATGTGTGTATAGTTGTGTGTGCATGTTCATGTCTATATTTGAATATACATAACATACACACACACGTATAAACGCAAGCACACATACA REF                  2                    10433830 - 10433926  
                   AGTTGTGTGTGCATGTTCATGT                                                         MATURE               2                    10433850 - 10433967  mmu-miR-669a         +                    
_________________________________________________________________________________________________

                                                                                             -SEQ-                       -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
........................................................CATAACATACACACACACGT......................       read_45746_5_3_8_4_5_3        OTHER           28        41.18           16        35.56           12        52.17                        20   
........................................................CATAACATACACACACACGTA.....................      read_116243_3_6_5_1_2_1        OTHER           18        26.47           14        31.11            4        17.39                        21   
........................................................CATAACATACACACACACGTAT....................        read_5970_4_2_2_2_1_0        OTHER           11        16.18            8        17.78            3        13.04                        22   
.........................................................ATAACATACACACACACGTAT....................      read_323986_1_1_1_0_1_0        OTHER            4         5.88            3         6.67            1         4.35                        21   
........................................................aATAACATACACACACACGTAT....................      read_307918_1_0_0_0_0_0        OTHER            1         1.47            1         2.22            0         0.00                        21   
........................................................CATAACATACACACACACGTt.....................      read_281813_0_1_0_0_0_0        OTHER            1         1.47            1         2.22            0         0.00            t           20   
........................................................CATAACATACACACACACGa......................      read_270550_0_0_0_0_1_0        OTHER            1         1.47            0         0.00            1         4.35            a           19   
.........................................................ATAACATACACACACACGT......................      read_126660_0_0_0_0_0_1        OTHER            1         1.47            0         0.00            1         4.35                        19   
........................................................CATAACATACACACACACGTAc....................      read_410315_0_0_0_0_1_0        OTHER            1         1.47            0         0.00            1         4.35            c           21   
........................................................aATAACATACACACACACGTA.....................      read_176526_0_1_0_0_0_0        OTHER            1         1.47            1         2.22            0         0.00                        20   
.........................................................ATAACATACACACACACGTA.....................      read_214687_0_1_0_0_0_0        OTHER            1         1.47            1         2.22            0         0.00                        20   
                                                                                                                                               ----------                ----------                ----------   
                                                                                                                                                       68                        45                        23                                          
                                                                                                                                                                            (66.18)                   (33.82)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE               1               0               1           1.45%
          OTHER              45              23              68          98.55%
                     ----------      ----------      ----------                
                             46              23              69                



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