[BEGIN]
REFERENCE HAIRPIN
***********************************************************************************************************************
ID : mmu-mir-652
DESCRIPTION : mmu-mir-652 MI0004965 Mus musculus miR-652 stem-loop
CHROMOSOME : X
SPAN : 139173543 - 139173640
LENGTH : 98
SEQUENCE : AGGAACAGCTATGTACTGCACAACCCTAGGAGGGGGTGCCATTCACATAGAGTATAATTGAATGGCGCCACTAGGGTTGTGCAGTGTACAGCCTACAC
OVERHANG THRESHOLD : 75%
***********************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-652
ACCID : MI0004965
PARENT : mmu-mir-652
CHROMOSOME : X
START : 139173543
STOP : 139173640
OFFSET : 61..81
SEQUENCE : AATGGCGCCACTAGGGTTGTG
STRAND : +
******************************
*** MATURE ***
__________________________________________________________________________________________________
AGGAACAGCTATGTACTGCACAACCCTAGGAGGGGGTGCCATTCACATAGAGTATAATTGAATGGCGCCACTAGGGTTGTGCAGTGTACAGCCTACAC REF X 139173543 - 139173640
AATGGCGCCACTAGGGTTGTG MATURE X 139173604 - 139173721 mmu-miR-652 +
__________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.............................................................ATGGCGCCACTAGGGTTGTGt................. read_353225_391_358_227_100_107_112 MATURE 1295 56.60 976 57.92 319 52.90 t 20
.............................................................ATGGCGCCACTAGGGTTGTGa................. read_96977_100_92_45_27_13_34 MATURE 311 13.59 237 14.07 74 12.27 a 20
.............................................................ATGGCGCCACTAGGGTTGTG.................. read_258646_42_37_14_10_9_6 MATURE 118 5.16 93 5.52 25 4.15 20
.............................................................ATGGCGCCACTAGGGTTGTtt................. read_142868_22_27_23_15_15_11 MATURE 113 4.94 72 4.27 41 6.80 tt 19
.............................................................ATGGCGCCACTAGGGTTGT................... read_84446_26_26_10_10_8_12 MATURE 92 4.02 62 3.68 30 4.98 19
.............................................................ATGGCGCCACTAGGGTTGTGtt................ read_233660_17_21_12_10_6_10 MATURE 76 3.32 50 2.97 26 4.31 tt 20
.............................................................ATGGCGCCACTAGGGTTGTGta................ read_373999_5_7_6_1_2_3 MATURE 24 1.05 18 1.07 6 1.00 ta 20
.............................................................ATGGCGCCACTAGGGTTGTta................. read_179550_2_7_6_0_3_5 MATURE 23 1.01 15 0.89 8 1.33 ta 19
.............................................................ATGGCGCCACTAGGGTTGTGaa................ read_262762_6_9_2_0_2_0 MATURE 19 0.83 17 1.01 2 0.33 aa 20
.............................................................ATGGCGCCACTAGGGTTGTGC................. read_240598_5_2_4_1_1_4 MATURE 17 0.74 11 0.65 6 1.00 21
.............................................................ATGGCGCCACTAGGGTTGTGat................ read_75223_5_4_4_0_2_2 MATURE 17 0.74 13 0.77 4 0.66 at 20
.............................................................ATGGCGCCACTAGGGTTG.................... read_58727_5_4_2_0_0_5 MATURE 16 0.70 11 0.65 5 0.83 18
.............................................................ATGGCGCCACTAGGGTTGTGttt............... read_65928_7_2_2_0_2_1 MATURE 14 0.61 11 0.65 3 0.50 ttt 20
.............................................................ATGGCGCCACTAGGGTTGTt.................. read_270047_2_4_0_0_2_2 MATURE 10 0.44 6 0.36 4 0.66 t 19
.............................................................ATGGCGCCACTAGGGTTtTG.................. read_410_2_2_1_0_5_0 MATURE 10 0.44 5 0.30 5 0.83 17T2
.............................................................ATGGCGCCACTAGGGTTGTGg................. read_372632_2_4_0_1_1_0 MATURE 8 0.35 6 0.36 2 0.33 g 20
.............................................................ATGGCGCCACTAGGGTTGTGtaa............... read_186771_3_1_1_1_0_2 MATURE 8 0.35 5 0.30 3 0.50 taa 20
.............................................................ATGGCGCCACTAGGGTTGggt................. read_247488_2_2_0_1_1_0 MATURE 6 0.26 4 0.24 2 0.33 ggt 18
.............................................................ATGGCGCCACTAGGGTT..................... read_90314_1_0_0_1_2_2 MATURE 6 0.26 1 0.06 5 0.83 17
.............................................................ATGGCGCCACTAGGGTTGTGtat............... read_300226_3_1_1_0_0_1 MATURE 6 0.26 5 0.30 1 0.17 tat 20
.............................................................ATGGCGCCACTAGGGTTGTat................. read_12543_0_3_1_0_1_1 MATURE 6 0.26 4 0.24 2 0.33 at 19
.............................................................ATGGCGCCACTAGGGTTGTaa................. read_283649_2_0_1_2_0_0 MATURE 5 0.22 3 0.18 2 0.33 aa 19
.............................................................ATGGCGCCACTAGGGTTGTtta................ read_49104_1_2_1_0_1_0 MATURE 5 0.22 4 0.24 1 0.17 tta 19
.............................................................ATGGCGCCACTAGGGTTGTttt................ read_287137_1_2_1_0_0_0 MATURE 4 0.17 4 0.24 0 0.00 ttt 19
...........................................................GAATGGCGCCACTAGGGTTGTGt................. read_362406_0_2_0_1_0_1 MATURE 4 0.17 2 0.12 2 0.33 t 22
.............................................................ATGGCGCCACTAGGGTTGTtg................. read_399686_0_1_1_0_1_0 MATURE 3 0.13 2 0.12 1 0.17 tg 19
.............................................................ATGGCGCCACTAGGGTTGTct................. read_100446_1_0_0_1_0_1 MATURE 3 0.13 1 0.06 2 0.33 ct 19
.............................................................ATGGCGCCACTAGGGTTGa................... read_121641_0_0_0_1_0_2 MATURE 3 0.13 0 0.00 3 0.50 a 18
.............................................................ATGGCGCCACTAGGGTTGTGtAG............... read_296138_1_1_0_0_1_0 MATURE 3 0.13 2 0.12 1 0.17 20T2
.............................................................ATGGCGCCACTAGGGgTGTG.................. read_129821_0_1_2_0_0_0 MATURE 3 0.13 3 0.18 0 0.00 15G4
.............................................................ATGGCGCCACTAGGGTTGgga................. read_218340_2_0_1_0_0_0 MATURE 3 0.13 3 0.18 0 0.00 gga 18
............................................................AATGGCGCCACTAGGGTTGTGt................. read_117023_2_1_0_0_0_0 MATURE 3 0.13 3 0.18 0 0.00 t 21
.............................................................ATGGCGCCACTAGGGTTGTGtgt............... read_15138_0_0_1_0_0_1 MATURE 2 0.09 1 0.06 1 0.17 tgt 20
.............................................................cTGGCGCCACTAGGGTTGTGtt................ read_200020_0_1_0_1_0_0 MATURE 2 0.09 1 0.06 1 0.17 tt 19
.............................................................ATGGCGCCACTAGGGTTGTa.................. read_311643_0_0_1_0_1_0 MATURE 2 0.09 1 0.06 1 0.17 a 19
.............................................................ATGGCGCCACTAGGGTTGgtt................. read_106617_0_2_0_0_0_0 MATURE 2 0.09 2 0.12 0 0.00 gtt 18
.............................................................ATGGCGCCACTAGGGTTGgg.................. read_145179_0_0_0_0_1_1 MATURE 2 0.09 0 0.00 2 0.33 gg 18
................................................................GCGCCACTAGGGTTGTG.................. read_248333_0_0_0_1_0_0 MATURE 1 0.04 0 0.00 1 0.17 17
.............................................................ATGGCGCCACTAGGGTTGTGtc................ read_53938_0_0_1_0_0_0 MATURE 1 0.04 1 0.06 0 0.00 tc 20
.............................................................ATGGCGCCACTAGGGTTGcgt................. read_74496_0_1_0_0_0_0 MATURE 1 0.04 1 0.06 0 0.00 cgt 18
...............................................................GGCGCCACTAGGGTTGTGt................. read_397730_0_0_0_1_0_0 MATURE 1 0.04 0 0.00 1 0.17 t 18
.............................................................ATGGCGCCACTAGGGTTGTGCAt............... read_147843_0_1_0_0_0_0 MATURE 1 0.04 1 0.06 0 0.00 t 22
.............................................................ATGGCGCCACTAGGGTTGTGaat............... read_297276_1_0_0_0_0_0 MATURE 1 0.04 1 0.06 0 0.00 aat 20
.............................................................ATGGCGCCACTAGGaTTGTG.................. read_213904_1_0_0_0_0_0 MATURE 1 0.04 1 0.06 0 0.00 14A5
.............................................................cTGGCGCCACTAGGGTTGT................... read_12208_0_0_0_1_0_0 MATURE 1 0.04 0 0.00 1 0.17 18
.............................................................ATaGCGCCACTAGGGTTGTGC................. read_27484_0_0_1_0_0_0 MATURE 1 0.04 1 0.06 0 0.00 2A18
.............................................................ATGGCGCCACTAGGGTTGTtc................. read_396892_0_0_0_0_0_1 MATURE 1 0.04 0 0.00 1 0.17 tc 19
............................................................AATGGCGCCACTAGGGTTGT................... read_26018_0_0_0_0_1_0 MATURE 1 0.04 0 0.00 1 0.17 20
.............................................................ATGGCGCCACTAGGGTTGTGatt............... read_20072_0_0_0_0_0_1 MATURE 1 0.04 0 0.00 1 0.17 att 20
.............................................................ATGGCGCCACTAGGGTTGgtg................. read_197389_0_0_0_0_1_0 MATURE 1 0.04 0 0.00 1 0.17 gtg 18
.............................................................ATGGCGCCACTAGGGTTGTtttaa.............. read_392006_0_0_0_1_0_0 MATURE 1 0.04 0 0.00 1 0.17 tttaa 19
.............................................................ATGGCGCCACTAGGGTTGTGttc............... read_170643_1_0_0_0_0_0 MATURE 1 0.04 1 0.06 0 0.00 ttc 20
.............................................................ATGGCGCCACTAGGGTTGTGata............... read_52456_0_0_1_0_0_0 MATURE 1 0.04 1 0.06 0 0.00 ata 20
...........................................................GAATGGCGCCACTAGGGTTGT................... read_250512_0_1_0_0_0_0 MATURE 1 0.04 1 0.06 0 0.00 21
.............................................................ATGGCGCCACTAGGGTTGggta................ read_227727_0_1_0_0_0_0 MATURE 1 0.04 1 0.06 0 0.00 ggta 18
.............................................................ATGGCGCCtCTAGGGTTGTG.................. read_236529_1_0_0_0_0_0 MATURE 1 0.04 1 0.06 0 0.00 8T11
...........................................................GAATGGCGCCACTAGGGTTG.................... read_261792_1_0_0_0_0_0 MATURE 1 0.04 1 0.06 0 0.00 20
.............................................................ATGGCGCCACTAGaGTTGTG.................. read_343783_0_0_1_0_0_0 MATURE 1 0.04 1 0.06 0 0.00 13A6
.............................................................ATGGCGCCACTAGGGTTGTGaAG............... read_12269_0_1_0_0_0_0 MATURE 1 0.04 1 0.06 0 0.00 20A2
.............................................................ATGGCGCCACTAGGGTTGaga................. read_250568_0_1_0_0_0_0 MATURE 1 0.04 1 0.06 0 0.00 aga 18
.............................................................ATGGCGCCACTAGGGTTGggg................. read_155068_1_0_0_0_0_0 MATURE 1 0.04 1 0.06 0 0.00 ggg 18
.............................................................ATGGCGCCACTAGGGTTGTctgcatg............ read_357158_0_0_1_0_0_0 MATURE 1 0.04 1 0.06 0 0.00 ctgcatg 19
.............................................................cTGGCGCCACTAGGGTTGTGt................. read_363610_0_0_0_0_0_1 MATURE 1 0.04 0 0.00 1 0.17 t 19
.............................................................ATGGCGCCACTAGGGTTGTtaa................ read_255339_1_0_0_0_0_0 MATURE 1 0.04 1 0.06 0 0.00 taa 19
.............................................................ATGGCGCCACTAGGGTTGgtc................. read_59351_0_0_1_0_0_0 MATURE 1 0.04 1 0.06 0 0.00 gtc 18
............................................................AATGGCGCCACTAGGGTTGTtt................. read_47786_0_1_0_0_0_0 MATURE 1 0.04 1 0.06 0 0.00 tt 20
.............................................................cTGGCGCCACTAGGGTTGTG.................. read_291409_1_0_0_0_0_0 MATURE 1 0.04 1 0.06 0 0.00 19
.............................................................ATGGCGCCACTAGGGTTGTttat............... read_63268_0_0_1_0_0_0 MATURE 1 0.04 1 0.06 0 0.00 ttat 19
.............................................................ATGGCGCCACTAtGGTTGTG.................. read_341039_0_0_1_0_0_0 MATURE 1 0.04 1 0.06 0 0.00 12T7
.............................................................ATGGCGCCACTAGGGTTGcGC................. read_224484_0_1_0_0_0_0 MATURE 1 0.04 1 0.06 0 0.00 18C2
.............................................................ATGGCGCCgCTAGGGTTGTG.................. read_118855_0_0_0_1_0_0 MATURE 1 0.04 0 0.00 1 0.17 8G11
.............................................................ATGGCGCCACTAGGGTTGTtttt............... read_258247_0_0_0_0_0_1 MATURE 1 0.04 0 0.00 1 0.17 tttt 19
.............................................................ATGGCGCCACTAGGGTTGgGC................. read_281590_1_0_0_0_0_0 MATURE 1 0.04 1 0.06 0 0.00 18G2
.............................................................ATGGCGCCcCTAGGGTTGTG.................. read_409185_0_1_0_0_0_0 MATURE 1 0.04 1 0.06 0 0.00 8C11
.............................................................ATGGCGCCACTAGGGTTGTGgt................ read_398309_0_1_0_0_0_0 MATURE 1 0.04 1 0.06 0 0.00 gt 20
.............................................................ATGGCGCCACTAGGGTTGagt................. read_90438_0_0_1_0_0_0 MATURE 1 0.04 1 0.06 0 0.00 agt 18
.............................................................ATGGCGCCACTAGGGTTGTGtta............... read_53930_0_0_1_0_0_0 MATURE 1 0.04 1 0.06 0 0.00 tta 20
.............................................................ATGGCGCCACTAGGtTTGTG.................. read_246115_1_0_0_0_0_0 MATURE 1 0.04 1 0.06 0 0.00 14T5
.............................................................ATGGCGCCACTAGGGTTGTtat................ read_111217_0_0_1_0_0_0 MATURE 1 0.04 1 0.06 0 0.00 tat 19
.............................................................ATGGCGCCACTAGGGTTGTGgga............... read_259490_0_0_0_1_0_0 MATURE 1 0.04 0 0.00 1 0.17 gga 20
............................................................AATGGCGCCACTAGGGTTGTG.................. read_114697_0_0_0_0_1_0 MATURE 1 0.04 0 0.00 1 0.17 21
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2288 1685 603
(73.65) (26.35)
*** OTHER ***
__________________________________________________________________________________________________
AGGAACAGCTATGTACTGCACAACCCTAGGAGGGGGTGCCATTCACATAGAGTATAATTGAATGGCGCCACTAGGGTTGTGCAGTGTACAGCCTACAC REF X 139173543 - 139173640
AATGGCGCCACTAGGGTTGTG MATURE X 139173604 - 139173721 mmu-miR-652 +
__________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.....................AACCCTAGGAGGGGGTGCCATT........................................................ read_395807_1_2_0_0_0_0 OTHER 3 30.00 3 37.50 0 0.00 22
.....................AACCCTAGGAGGGGGTGCCATTC....................................................... read_306962_0_0_0_1_1_0 OTHER 2 20.00 0 0.00 2 100.00 23
.....................AACCCTAGGAGGGGGTGCCA.......................................................... read_120797_0_0_1_0_0_0 OTHER 1 10.00 1 12.50 0 0.00 20
.....................AACCCTAGGAGGGGGTGCCATTCA...................................................... read_86828_1_0_0_0_0_0 OTHER 1 10.00 1 12.50 0 0.00 24
.....................AACCCTAGGAGGGGaTGCCATTCA...................................................... read_76636_1_0_0_0_0_0 OTHER 1 10.00 1 12.50 0 0.00 14A9
...AACAGCTATGTACTGCA............................................................................... read_242266_0_0_1_0_0_0 OTHER 1 10.00 1 12.50 0 0.00 17
.....................AACCCTAGGAGGGGGTGCCATTa....................................................... read_367256_0_1_0_0_0_0 OTHER 1 10.00 1 12.50 0 0.00 a 22
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10 8 2
(80.00) (20.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
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MATURE 1685 603 2288 99.56%
OTHER 8 2 10 0.44%
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1693 605 2298
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