[BEGIN]
REFERENCE HAIRPIN
***************************************************************************************************
ID : mmu-mir-574
DESCRIPTION : mmu-mir-574 MI0005518 Mus musculus miR-574 stem-loop
CHROMOSOME : 5
SPAN : 65361557 - 65361634
LENGTH : 78
SEQUENCE : TGCGGGCGTGTGAGTGTGTGTGTGTGAGTGTGTGTCGCTCCAAGTCCACGCTCATGCACACACCCACACGCCCGCACG
OVERHANG THRESHOLD : 75%
***************************************************************************************************
TARGET
******************************
CATEGORY : MATURE-3P
ID : mmu-miR-574-3p
ACCID : MI0005518
PARENT : mmu-mir-574
CHROMOSOME : 5
START : 65361557
STOP : 65361634
OFFSET : 47..68
SEQUENCE : CACGCTCATGCACACACCCACA
STRAND : +
******************************
TARGET
******************************
CATEGORY : MATURE-5P
ID : mmu-miR-574-5p
ACCID : MI0005518
PARENT : mmu-mir-574
CHROMOSOME : 5
START : 65361557
STOP : 65361634
OFFSET : 11..33
SEQUENCE : TGAGTGTGTGTGTGTGAGTGTGT
STRAND : +
******************************
*** MATURE-3P ***
______________________________________________________________________________
TGCGGGCGTGTGAGTGTGTGTGTGTGAGTGTGTGTCGCTCCAAGTCCACGCTCATGCACACACCCACACGCCCGCACG REF 5 65361557 - 65361634
CACGCTCATGCACACACCCACA MATURE-3P 5 65361604 - 65361702 mmu-miR-574-3p +
TGAGTGTGTGTGTGTGAGTGTGT MATURE-5P 5 65361568 - 65361667 mmu-miR-574-5p +
______________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...............................................ACGCTCATGCACACACCCACA........... read_358472_0_1_0_2_1_2 MATURE-3P 6 40.00 1 14.29 5 62.50 21
...............................................ACGCTCATGCACACACCCACAt.......... read_103265_1_0_0_1_0_0 MATURE-3P 2 13.33 1 14.29 1 12.50 t 21
...............................................ACGCTCATGCACACACCCACAa.......... read_239574_1_0_1_0_0_0 MATURE-3P 2 13.33 2 28.57 0 0.00 a 21
...............................................ACGCTCATGCACACACCCACt........... read_394128_1_0_0_0_0_0 MATURE-3P 1 6.67 1 14.29 0 0.00 t 20
..............................................CACGCTCATGCACACACCCACA........... read_5018_0_0_0_0_0_1 MATURE-3P 1 6.67 0 0.00 1 12.50 22
...............................................ACGCTCATGCACACACCCA............. read_307709_1_0_0_0_0_0 MATURE-3P 1 6.67 1 14.29 0 0.00 19
...............................................ACGCTCATGCACACACCCAC............ read_11002_0_0_0_0_1_0 MATURE-3P 1 6.67 0 0.00 1 12.50 20
...............................................ACGCTCATGCACACACCCAatt.......... read_216576_1_0_0_0_0_0 MATURE-3P 1 6.67 1 14.29 0 0.00 att 19
---------- ---------- ----------
15 7 8
(46.67) (53.33)
*** MATURE-5P ***
______________________________________________________________________________
TGCGGGCGTGTGAGTGTGTGTGTGTGAGTGTGTGTCGCTCCAAGTCCACGCTCATGCACACACCCACACGCCCGCACG REF 5 65361557 - 65361634
CACGCTCATGCACACACCCACA MATURE-3P 5 65361604 - 65361702 mmu-miR-574-3p +
TGAGTGTGTGTGTGTGAGTGTGT MATURE-5P 5 65361568 - 65361667 mmu-miR-574-5p +
______________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...........GAGTGTGTGTGTGTGAGTGT................................................ read_98346_1_2_1_0_0_1 MATURE-5P 5 41.67 4 50.00 1 25.00 20
...........GAGTGTGTGTGTGTGAGTGTGT.............................................. read_220414_2_0_2_0_0_0 MATURE-5P 4 33.33 4 50.00 0 0.00 22
...........GAGTGTGTGTGTGTGAGTGTGTGT............................................ read_248360_0_0_0_1_0_0 MATURE-5P 1 8.33 0 0.00 1 25.00 24
...........GAGTGTGTGTGTGTGAGTGTGTG............................................. read_241355_0_0_0_1_0_0 MATURE-5P 1 8.33 0 0.00 1 25.00 23
...........GAGTGTGTGTGTGTGAGTGTG............................................... read_150001_0_0_0_0_1_0 MATURE-5P 1 8.33 0 0.00 1 25.00 21
---------- ---------- ----------
12 8 4
(66.67) (33.33)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE-3P 7 8 15 55.56%
MATURE-5P 8 4 12 44.44%
---------- ---------- ----------
15 12 27
[END]